Rh5AG086700
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0005527
Physical Location & Seq
Reverse (-)
7648375 .. 7652404
4030 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG086700.1

Sequence Viewer

Length: 1158 bp
ATGATGAATGAGGTGGAGTTAATTGGTGATCAAAAAGAAAAGACTGACAAAAATATCAGTGAGGACCAAGCAGAAAACATATCGGTGGGTTCTTCCCAGAAATGCTCATGCTTTGATTTAAATGAAGAAGCCAGCGATAACAGCGACAATGATAACAGCGATAACAGCAATGCCAACGTTAACCTGGATGATCATGAACTTAGTACAGTTAGAAATGATGAAAGAAGAGCCCTAGCCCAGGGAAACATTAATAGTAATGCAGCTACTATTAGTAATAGCTCTAGGGTTAAAGTAAGGCCATATGTACGATCCAAACTTCCTCGTCTGCGGTGGACACCCCAACTCCATCTTTCATTTTTGCATGCTTTGGAATTACTGGGAGGGCATGAGAGAGCAACTCCCAAGTTGGTTCTTCAGCTAATGAATGTGAGAGGACTAAGCATTTCCCACGTAAAGAGTCACTTGCAGATGTATCGAAGTAAGAAGCTTGATAGGGATGGTCAAGTATCTGATGAGAAAACTTACGATTACACGGATGGAAGAGAATCAAGGGATCACATACCTAACTTCGATTCGAGGTCAAGTTCTCTGACAAAGAAAGAAGTCGTACAAGGCAACAATTTGAACAAAGCTTTGCATCAAACAAGCACTCCCATAAACCCTAGCCGATTACGTGAGGAAAAGAGGTGGCCTCCATTTCAAAGCATTAGCAAAAGCTGGAGGGCCAGAAGATTTGCTTCCAACAATATCAATTGGTCAAATAGTCATAACGGCTCATCCCAATCTGATATAATGCATCACATGATTAGCAACAGACCAACAGATCATGATCTACGTTCTTGGAACCTTGAAGGTCATAGCAATTCAAGTAGCTACAAACAAGAATTCGAACCGCCATTTAGGCTTGAGTGGAACAAGGAAAAAATTTTGAAGTACAAGGAATGGATGCCTGATTTGGAGTTGGGTCTGCAAAGCCAAAGAGTTTGGAATGAGATCAATGACGAGACTCAGCATCATCAGACGATTAGTCACGCAGAAGGAAATTATGAAACTGTGCAAGGAGTTATAGAGACTTCACAATATTACAAAGATCATCAATTCGAGGACATGAATAGCAAACAAGAAACAATTAGCACCAAGCTTTCCCTTTCTCTTTAA

Protein Analysis

385

Amino Acids

44.46

Weight (kDa)

6.29

Isoelectric Point (pI)

57.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 108 - 159 3.7e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 328, 893
AclI AACGTT 1 cut(s) 177
AclWI GGATC 2 cut(s) 303, 561
AcsI RAATTY 2 cut(s) 884, 924
AcuI CTGAAG 1 cut(s) 398
AfaI GTAC 4 cut(s) 205, 306, 609, 935
AfiI CCNNNNNNNGG 1 cut(s) 238
AgsI TTSAA 5 cut(s) 625, 701, 851, 867, 931
AhdI GACNNNNNGTC 1 cut(s) 1026
AjnI CCWGG 2 cut(s) 183, 237
AluBI AGCT 8 cut(s) 263, 279, 418, 487, 632, 717, 873, 1141
AluI AGCT 8 cut(s) 263, 279, 418, 487, 632, 717, 873, 1141
Alw26I GTCTC 2 cut(s) 998, 1064
AlwI GGATC 2 cut(s) 303, 561
AoxI GGCC 3 cut(s) 296, 689, 723
ApeKI GCWGC 1 cut(s) 260
ApoI RAATTY 2 cut(s) 884, 924
AseI ATTAAT 1 cut(s) 249
AspS9I GGNCC 2 cut(s) 64, 723
AsuHPI GGTGA 1 cut(s) 38
AsuII TTCGAA 1 cut(s) 888
AvaII GGWCC 1 cut(s) 64
BanII GRGCYC 1 cut(s) 232
BbvI GCAGC 1 cut(s) 272
BccI CCATC 3 cut(s) 354, 491, 530
BceAI ACGGC 1 cut(s) 787
BcgI CGANNNNNNTGC 2 cut(s) 455, 489
BciT130I CCWGG 2 cut(s) 185, 239
BclI TGATCA 2 cut(s) 28, 190
BcoDI GTCTC 2 cut(s) 998, 1064
BfaI CTAG 3 cut(s) 233, 282, 663
BglI GCCNNNNNGGC 1 cut(s) 901
BisI GCNGC 1 cut(s) 261
BlsI GCNGC 1 cut(s) 262
Bme1390I CCNGG 2 cut(s) 185, 239
Bme18I GGWCC 1 cut(s) 64
BmeRI GACNNNNNGTC 1 cut(s) 1026
BmgT120I GGNCC 2 cut(s) 64, 723
BmiI GGNNCC 1 cut(s) 845
BmrFI CCNGG 2 cut(s) 185, 239
BmrI ACTGGG 1 cut(s) 386
BmsI GCATC 4 cut(s) 646, 805, 936, 1021
BmuI ACTGGG 1 cut(s) 386
BplI GAGNNNNNCTC 4 cut(s) 382, 414, 676, 708
BpmI CTGGAG 1 cut(s) 739
Bpu14I TTCGAA 1 cut(s) 888
BpuEI CTTGAG 1 cut(s) 926
BsaAI YACGTR 2 cut(s) 451, 674
BsaBI GATNNNNATC 1 cut(s) 828
BsaJI CCNNGG 2 cut(s) 237, 238
BsaXI ACNNNNNCTCC 4 cut(s) 327, 357, 634, 664
Bsc4I CCNNNNNNNGG 1 cut(s) 238
Bse1I ACTGG 1 cut(s) 381
Bse3DI GCAATG 1 cut(s) 175
Bse8I GATNNNNATC 1 cut(s) 828
BseBI CCWGG 2 cut(s) 185, 239
BseDI CCNNGG 2 cut(s) 237, 238
BseGI GGATG 5 cut(s) 193, 502, 541, 776, 951
BseJI GATNNNNATC 1 cut(s) 828
BseLI CCNNNNNNNGG 1 cut(s) 238
BseMI GCAATG 1 cut(s) 175
BseMII CTCAG 1 cut(s) 1022
BseNI ACTGG 1 cut(s) 381
BseXI GCAGC 1 cut(s) 272
BshFI GGCC 3 cut(s) 298, 691, 725
BslI CCNNNNNNNGG 1 cut(s) 238
BsmAI GTCTC 2 cut(s) 998, 1064
BsnI GGCC 3 cut(s) 298, 691, 725
Bsp119I TTCGAA 1 cut(s) 888
Bsp1286I GDGCHC 1 cut(s) 232
Bsp143I GATC 8 cut(s) 28, 190, 308, 553, 823, 829, 993, 1090
BspACI CCGC 2 cut(s) 328, 893
BspANI GGCC 3 cut(s) 298, 691, 725
BspCNI CTCAG 1 cut(s) 1021
BspHI TCATGA 2 cut(s) 193, 826
BspLI GGNNCC 1 cut(s) 845
BspPI GGATC 2 cut(s) 303, 561
BspQI GCTCTTC 1 cut(s) 220
BspT104I TTCGAA 1 cut(s) 888
BsrDI GCAATG 1 cut(s) 175
BsrI ACTGG 1 cut(s) 381
BssECI CCNNGG 2 cut(s) 237, 238
BssMI GATC 8 cut(s) 28, 190, 308, 553, 823, 829, 993, 1090
Bst2UI CCWGG 2 cut(s) 185, 239
Bst4CI ACNGT 2 cut(s) 208, 1054
Bst6I CTCTTC 2 cut(s) 220, 535
BstBAI YACGTR 2 cut(s) 451, 674
BstBI TTCGAA 1 cut(s) 888
BstC8I GCNNGC 2 cut(s) 133, 363
BstDEI CTNAG 3 cut(s) 200, 437, 1008
BstENI CCTNNNNNAGG 1 cut(s) 236
BstF5I GGATG 5 cut(s) 193, 502, 541, 776, 951
BstKTI GATC 8 cut(s) 31, 193, 311, 556, 826, 832, 996, 1093
BstMAI GTCTC 2 cut(s) 998, 1064
BstMBI GATC 8 cut(s) 28, 190, 308, 553, 823, 829, 993, 1090
BstMWI GCNNNNNNNGC 3 cut(s) 141, 165, 901
BstNI CCWGG 2 cut(s) 185, 239
BstNSI RCATGY 1 cut(s) 365
BstSCI CCNGG 2 cut(s) 183, 237
BstV1I GCAGC 1 cut(s) 272
BsuRI GGCC 3 cut(s) 298, 691, 725
BtsCI GGATG 5 cut(s) 193, 502, 541, 776, 951
BtsIMutI CAGTG 1 cut(s) 64
Cac8I GCNNGC 2 cut(s) 133, 363
CciI TCATGA 2 cut(s) 193, 826
Cfr13I GGNCC 2 cut(s) 64, 723
Csp6I GTAC 4 cut(s) 204, 305, 608, 934
CviAII CATG 7 cut(s) 108, 194, 362, 386, 802, 827, 1108
CviQI GTAC 4 cut(s) 204, 305, 608, 934
DdeI CTNAG 3 cut(s) 200, 437, 1008
DpnI GATC 8 cut(s) 30, 192, 310, 555, 825, 831, 995, 1092
DpnII GATC 8 cut(s) 28, 190, 308, 553, 823, 829, 993, 1090
DraI TTTAAA 1 cut(s) 120
DriI GACNNNNNGTC 1 cut(s) 1026
Eam1104I CTCTTC 2 cut(s) 220, 535
Eam1105I GACNNNNNGTC 1 cut(s) 1026
EarI CTCTTC 2 cut(s) 220, 535
Eco24I GRGCYC 1 cut(s) 232
Eco47I GGWCC 1 cut(s) 64
Eco57I CTGAAG 1 cut(s) 398
EcoNI CCTNNNNNAGG 1 cut(s) 236
EcoRI GAATTC 1 cut(s) 884
EcoRII CCWGG 2 cut(s) 183, 237
EcoT22I ATGCAT 1 cut(s) 798
EcoT38I GRGCYC 1 cut(s) 232
FaeI CATG 7 cut(s) 111, 197, 365, 389, 805, 830, 1111
FalI AAGNNNNNCTT 4 cut(s) 446, 478, 721, 753
FatI CATG 7 cut(s) 107, 193, 361, 385, 801, 826, 1107
FauNDI CATATG 1 cut(s) 301
FbaI TGATCA 2 cut(s) 28, 190
Fnu4HI GCNGC 1 cut(s) 261
FokI GGATG 5 cut(s) 200, 509, 548, 763, 958
FriOI GRGCYC 1 cut(s) 232
Fsp4HI GCNGC 1 cut(s) 261
FspBI CTAG 3 cut(s) 233, 282, 663
GluI GCNGC 1 cut(s) 261
GsuI CTGGAG 1 cut(s) 739
HaeIII GGCC 3 cut(s) 298, 691, 725
Hin1II CATG 7 cut(s) 111, 197, 365, 389, 805, 830, 1111
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HindIII AAGCTT 3 cut(s) 485, 630, 1139
HinfI GANTC 4 cut(s) 457, 545, 572, 1006
HpaI GTTAAC 1 cut(s) 181
HphI GGTGA 1 cut(s) 38
Hpy166II GTNNAC 2 cut(s) 181, 333
Hpy188I TCNGA 4 cut(s) 511, 591, 787, 1020
Hpy188III TCNNGA 2 cut(s) 194, 827
Hpy8I GTNNAC 2 cut(s) 181, 333
HpyAV CCTTC 2 cut(s) 845, 1031
HpyCH4III ACNGT 2 cut(s) 208, 1054
HpyCH4IV ACGT 4 cut(s) 177, 450, 673, 835
HpyCH4V TGCA 7 cut(s) 260, 361, 466, 637, 796, 970, 1057
HpyF10VI GCNNNNNNNGC 3 cut(s) 141, 165, 901
HpyF3I CTNAG 3 cut(s) 200, 437, 1008
HpySE526I ACGT 4 cut(s) 177, 450, 673, 835
Hsp92II CATG 7 cut(s) 111, 197, 365, 389, 805, 830, 1111
Ksp22I TGATCA 2 cut(s) 28, 190
KspAI GTTAAC 1 cut(s) 181
Kzo9I GATC 8 cut(s) 28, 190, 308, 553, 823, 829, 993, 1090
LguI GCTCTTC 1 cut(s) 220
Lsp1109I GCAGC 1 cut(s) 272
LweI GCATC 4 cut(s) 646, 805, 936, 1021
MaeI CTAG 3 cut(s) 233, 282, 663
MaeII ACGT 4 cut(s) 177, 450, 673, 835
MaeIII GTNAC 2 cut(s) 458, 1028
MalI GATC 8 cut(s) 30, 192, 310, 555, 825, 831, 995, 1092
MboI GATC 8 cut(s) 28, 190, 308, 553, 823, 829, 993, 1090
MboII GAAGA 6 cut(s) 84, 137, 237, 404, 552, 741
MfeI CAATTG 1 cut(s) 751
MhlI GDGCHC 1 cut(s) 232
MlyI GAGTC 2 cut(s) 466, 1000
MmeI TCCRAC 1 cut(s) 765
Mph1103I ATGCAT 1 cut(s) 798
MseI TTAA 6 cut(s) 20, 119, 180, 249, 288, 1156
MslI CAYNNNNRTG 1 cut(s) 83
MspR9I CCNGG 2 cut(s) 185, 239
MunI CAATTG 1 cut(s) 751
MvaI CCWGG 2 cut(s) 185, 239
MwoI GCNNNNNNNGC 3 cut(s) 141, 165, 901
NdeI CATATG 1 cut(s) 301
NdeII GATC 8 cut(s) 28, 190, 308, 553, 823, 829, 993, 1090
NlaIII CATG 7 cut(s) 111, 197, 365, 389, 805, 830, 1111
NlaIV GGNNCC 1 cut(s) 845
NmuCI GTSAC 2 cut(s) 458, 1028
NsiI ATGCAT 1 cut(s) 798
NspI RCATGY 1 cut(s) 365
NspV TTCGAA 1 cut(s) 888
PaeI GCATGC 1 cut(s) 365
PagI TCATGA 2 cut(s) 193, 826
PasI CCCWGGG 1 cut(s) 238
PciSI GCTCTTC 1 cut(s) 220
PfeI GAWTC 2 cut(s) 545, 572
PkrI GCNGC 1 cut(s) 262
PleI GAGTC 2 cut(s) 465, 1000
PpsI GAGTC 2 cut(s) 465, 1000
Ppu21I YACGTR 2 cut(s) 451, 674
PshBI ATTAAT 1 cut(s) 249
Psp1406I AACGTT 1 cut(s) 177
Psp6I CCWGG 2 cut(s) 183, 237
PspGI CCWGG 2 cut(s) 183, 237
PspN4I GGNNCC 1 cut(s) 845
PspPI GGNCC 2 cut(s) 64, 723
RsaI GTAC 4 cut(s) 205, 306, 609, 935
RsaNI GTAC 4 cut(s) 204, 305, 608, 934
RseI CAYNNNNRTG 1 cut(s) 83
SapI GCTCTTC 1 cut(s) 220
SaqAI TTAA 6 cut(s) 20, 119, 180, 249, 288, 1156
SatI GCNGC 1 cut(s) 261
Sau3AI GATC 8 cut(s) 28, 190, 308, 553, 823, 829, 993, 1090
Sau96I GGNCC 2 cut(s) 64, 723
SchI GAGTC 2 cut(s) 466, 1000
ScrFI CCNGG 2 cut(s) 185, 239
SduI GDGCHC 1 cut(s) 232
SfaNI GCATC 4 cut(s) 646, 805, 936, 1021
SfuI TTCGAA 1 cut(s) 888
SinI GGWCC 1 cut(s) 64
SmiI ATTTAAAT 1 cut(s) 120
SmiMI CAYNNNNRTG 1 cut(s) 83
SmlI CTYRAG 1 cut(s) 905
SmoI CTYRAG 1 cut(s) 905
SphI GCATGC 1 cut(s) 365
SsiI CCGC 2 cut(s) 328, 893
SspI AATATT 1 cut(s) 1082
SspMI CTAG 3 cut(s) 233, 282, 663
StyD4I CCNGG 2 cut(s) 183, 237
SwaI ATTTAAAT 1 cut(s) 120
TaaI ACNGT 2 cut(s) 208, 1054
TaiI ACGT 4 cut(s) 180, 453, 676, 838
TaqI TCGA 5 cut(s) 475, 570, 575, 888, 1101
TatI WGTACW 2 cut(s) 203, 933
TfiI GAWTC 2 cut(s) 545, 572
Tru1I TTAA 6 cut(s) 20, 119, 180, 249, 288, 1156
Tru9I TTAA 6 cut(s) 20, 119, 180, 249, 288, 1156
TscAI CASTG 1 cut(s) 64
TseFI GTSAC 2 cut(s) 458, 1028
TseI GCWGC 1 cut(s) 260
Tsp45I GTSAC 2 cut(s) 458, 1028
TspDTI ATGAA 8 cut(s) 20, 138, 210, 234, 342, 437, 1062, 1124
TspGWI ACGGA 1 cut(s) 548
TspRI CASTG 1 cut(s) 64
VpaK11BI GGWCC 1 cut(s) 64
VspI ATTAAT 1 cut(s) 249
XagI CCTNNNNNAGG 1 cut(s) 236
XapI RAATTY 2 cut(s) 884, 924
XceI RCATGY 1 cut(s) 365
XcmI CCANNNNNNNNNTGG 1 cut(s) 181
XspI CTAG 3 cut(s) 233, 282, 663
Zsp2I ATGCAT 1 cut(s) 798
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.