Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0005527

Physical Location & Seq

Genomic Coordinates Reverse (-)

2989763 .. 2993284

Gene Structure 3522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G062400.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGACCAATGAGAAAGATTATGGTGATCAGGAAGAAAACACATCAGAGGGGTCTTCCCAATTGAAATGCTCATCCTTTGATTTGAATGAAGAAGCTGGTAGTGATAATTGTGATGATACCAAGGTTGAAGAATTCGAACTGAGTGTTGACGAAGACGACGAAAAAAGAGGTCAAGGGAATATCAATAGTAGTACTGCATCCAGTGCTGAAGGAAATGAAAGGCGGAGAGGGAAAGTAAGGCAATATGTGAGATCGAAAATGCCTCGTCTCCGGTGGACACCTCAACTCCATCTTTCTTTTGTTCATGCTGTTGAAAGACTCGGTGGCCAAGACAGAGCAACTCCCAAGTTAGTTCTTCAGCTCATGAATGTGAAAGGACTTAGCATTTCGCATGTAAAGAGTCACTTGCAGATGTATCGAAGTAAGAAGCTTGATGGGGATGGTCAAGTGGTATCTGAGAAACAAGAATCCACGCGTGGGAGGGATCACATAGCTTGCATGTTGCACCAAACAATTAAGCAGCCTCGTCAACATGTATACTTTAGAACGGACAACGGTGGCATTGTTGTAGCGACACCTTCACACGACCACAGACAACCACTACACTCAGATTTTAAACCTAACGTTCCAAGGTCATCATGTTCTCTACTAAACGAAGAAGTTGTACAAGGCAACAAATCGATGGACATGACGGTGCGATCGACTACTGTCCCCATAAACCCTAGCCGGTTTCTTGAGGAAAAGAAGTGGCCTCCATTTGGAATGATTAACAAACAACAATGTTGGAGAGCTAAAAGATTTCCTGCCAAAGTCAGTTGGTCACATAATTATAATGGCTCGCAATCTGACCATTTAGTGCGTCATATGCGCACCACACCAAGGTTGAATAATGAGCAGTTTTTCCACAATACAAGATCAACAGAATGGAACCTTGGAGAGAACAAGAACACAAGGCGGTTTCCATCAAATTCATACAATTCTATCAGCAATTCCAGTTGCCACAAAACTGAATTCGAGCCCCCATTTAGGCTTGAGTTGAACGAAGAAAAGATTTTGAAGTACAAGGAGTGGATGCCTGAATTGGAATTGGGTCTGAGCCAAAGAGTTGAGAATCATGAGAAGACGATTTTCCAACATCAGATGGTTAGTGAAGAAGCTTATGAAACTGCCCAAAGAATTAAACAAAACTATTACAAAGAGCTTGAGGACAGGAGCAAGCAGGAAATTAGCACCAAGCTTTCTCTCTCTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

418

Amino Acids

48.4

Weight (kDa)

8.38

Isoelectric Point (pI)

60.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005527)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g07670 FvH4_3g07670 FvH4_3g07670
malus_domestica	MD05G1299300.v1.1 MD10G1278800.v1.1
prunus_persica	Prupe.4G062400_v2.0.a1 Prupe.4G062400_v2.0.a1 Prupe.4G062400_v2.0.a1 Prupe.4G062400_v2.0.a1 Prupe.4G062400_v2.0.a1 Prupe.4G062400_v2.0.a1 Prupe.4G062400_v2.0.a1
pyrus_communis	pycom05g27750 pycom10g23280
rosa_chinensis	RchiOBHm_Chr5g0011011
rosa_laevigata	RLG00000031802
rosa_multiflora	Rmu_sc0003242.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065390
rosa_rugosa	Rorug04G0454300 Rorug04G0454400 Rorug04G0454500 Rorug04G0454500 Rorug04G0454500
rosa_samantha	Rh5AG086700 Rh5BG081300 Rh5CG094100 Rh5DG081200
rosa_wichuraiana	Rw0G000110 Rw0G017840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	831
Acc16I	TGCGCA	1 cut(s)	869
AccI	GTMKAC	1 cut(s)	537
AccII	CGCG	1 cut(s)	475
AciI	CCGC	2 cut(s)	223, 955
AclI	AACGTT	1 cut(s)	624
AclWI	GGATC	1 cut(s)	492
AcoI	YGGCCR	1 cut(s)	325
AcsI	RAATTY	3 cut(s)	131, 967, 1010
AcuI	CTGAAG	2 cut(s)	228, 341
AfaI	GTAC	3 cut(s)	193, 666, 1061
AfiI	CCNNNNNNNGG	4 cut(s)	477, 758, 879, 1026
AflIII	ACRYGT	2 cut(s)	473, 532
AgsI	TTSAA	7 cut(s)	64, 85, 128, 314, 886, 1039, 1057
AjuI	GAANNNNNNNTTGG	2 cut(s)	915, 947
AluBI	AGCT	8 cut(s)	95, 361, 430, 494, 791, 1157, 1201, 1237
AluI	AGCT	8 cut(s)	95, 361, 430, 494, 791, 1157, 1201, 1237
Alw26I	GTCTC	1 cut(s)	272
AlwI	GGATC	1 cut(s)	492
AoxI	GGCC	2 cut(s)	325, 749
ApeKI	GCWGC	1 cut(s)	520
ApoI	RAATTY	3 cut(s)	131, 967, 1010
AspLEI	GCGC	1 cut(s)	870
AsuHPI	GGTGA	1 cut(s)	35
AsuII	TTCGAA	1 cut(s)	135
BaeI	ACNNNNGTAYC	2 cut(s)	108, 141
BalI	TGGCCA	1 cut(s)	327
BanII	GRGCYC	1 cut(s)	1020
BarI	GAAGNNNNNNTAC	2 cut(s)	648, 680
BbsI	GAAGAC	3 cut(s)	45, 159, 1127
BbvI	GCAGC	1 cut(s)	532
BccI	CCATC	6 cut(s)	297, 428, 434, 676, 970, 1135
BcgI	CGANNNNNNTGC	2 cut(s)	398, 432
BclI	TGATCA	1 cut(s)	25
BcoDI	GTCTC	1 cut(s)	272
BfaI	CTAG	1 cut(s)	723
BisI	GCNGC	1 cut(s)	521
BlsI	GCNGC	1 cut(s)	522
BmcAI	AGTACT	1 cut(s)	193
BmiI	GGNNCC	1 cut(s)	929
BmsI	GCATC	2 cut(s)	206, 1062
BoxI	GACNNNNGTC	1 cut(s)	707
BpiI	GAAGAC	3 cut(s)	45, 159, 1127
Bpu14I	TTCGAA	1 cut(s)	135
BpuEI	CTTGAG	3 cut(s)	755, 1052, 1223
Bsa29I	ATCGAT	1 cut(s)	680
BsaJI	CCNNGG	4 cut(s)	120, 629, 878, 931
BsaWI	WCCGGW	1 cut(s)	270
BsaXI	ACNNNNNCTCC	2 cut(s)	270, 300
Bsc4I	CCNNNNNNNGG	4 cut(s)	477, 758, 879, 1026
Bse118I	RCCGGY	1 cut(s)	726
Bse1I	ACTGG	2 cut(s)	201, 993
BseCI	ATCGAT	1 cut(s)	680
BseDI	CCNNGG	4 cut(s)	120, 629, 878, 931
BseGI	GGATG	4 cut(s)	71, 197, 445, 1077
BseLI	CCNNNNNNNGG	4 cut(s)	477, 758, 879, 1026
BseMII	CTCAG	4 cut(s)	131, 447, 621, 1085
BseNI	ACTGG	2 cut(s)	201, 993
BseXI	GCAGC	1 cut(s)	532
Bsh1236I	CGCG	1 cut(s)	475
Bsh1285I	CGRYCG	1 cut(s)	701
BshFI	GGCC	2 cut(s)	327, 751
BshVI	ATCGAT	1 cut(s)	680
BsiEI	CGRYCG	1 cut(s)	701
BsiSI	CCGG	2 cut(s)	271, 727
BslFI	GGGAC	1 cut(s)	695
BslI	CCNNNNNNNGG	4 cut(s)	477, 758, 879, 1026
BsmAI	GTCTC	1 cut(s)	272
BsmBI	CGTCTC	1 cut(s)	272
BsmFI	GGGAC	1 cut(s)	695
BsnI	GGCC	2 cut(s)	327, 751
Bsp119I	TTCGAA	1 cut(s)	135
Bsp1286I	GDGCHC	1 cut(s)	1020
Bsp1407I	TGTACA	1 cut(s)	664
Bsp143I	GATC	5 cut(s)	25, 251, 484, 698, 914
BspACI	CCGC	2 cut(s)	223, 955
BspANI	GGCC	2 cut(s)	327, 751
BspCNI	CTCAG	4 cut(s)	132, 448, 620, 1086
BspDI	ATCGAT	1 cut(s)	680
BspFNI	CGCG	1 cut(s)	475
BspHI	TCATGA	2 cut(s)	363, 1114
BspLI	GGNNCC	1 cut(s)	929
BspPI	GGATC	1 cut(s)	492
BspT104I	TTCGAA	1 cut(s)	135
BsrFI	RCCGGY	1 cut(s)	726
BsrGI	TGTACA	1 cut(s)	664
BsrI	ACTGG	2 cut(s)	201, 993
BssAI	RCCGGY	1 cut(s)	726
BssECI	CCNNGG	4 cut(s)	120, 629, 878, 931
BssMI	GATC	5 cut(s)	25, 251, 484, 698, 914
BssNAI	GTATAC	1 cut(s)	538
BssT1I	CCWWGG	4 cut(s)	120, 629, 878, 931
Bst1107I	GTATAC	1 cut(s)	538
Bst4CI	ACNGT	3 cut(s)	557, 694, 709
BstAPI	GCANNNNNTGC	1 cut(s)	203
BstAUI	TGTACA	1 cut(s)	664
BstBI	TTCGAA	1 cut(s)	135
BstC8I	GCNNGC	3 cut(s)	496, 839, 1217
BstDEI	CTNAG	5 cut(s)	140, 380, 456, 607, 1094
BstF5I	GGATG	4 cut(s)	71, 197, 445, 1077
BstFNI	CGCG	1 cut(s)	475
BstHHI	GCGC	1 cut(s)	870
BstKTI	GATC	5 cut(s)	28, 254, 487, 701, 917
BstMAI	GTCTC	1 cut(s)	272
BstMBI	GATC	5 cut(s)	25, 251, 484, 698, 914
BstMCI	CGRYCG	1 cut(s)	701
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 865
BstNSI	RCATGY	3 cut(s)	395, 502, 536
BstPAI	GACNNNNGTC	1 cut(s)	707
BstUI	CGCG	1 cut(s)	475
BstV1I	GCAGC	1 cut(s)	532
BstV2I	GAAGAC	3 cut(s)	45, 159, 1127
BstZ17I	GTATAC	1 cut(s)	538
Bsu15I	ATCGAT	1 cut(s)	680
BsuRI	GGCC	2 cut(s)	327, 751
BsuTUI	ATCGAT	1 cut(s)	680
BtsCI	GGATG	4 cut(s)	71, 197, 445, 1077
BtsIMutI	CAGTG	1 cut(s)	208
Cac8I	GCNNGC	3 cut(s)	496, 839, 1217
CciI	TCATGA	2 cut(s)	363, 1114
CfoI	GCGC	1 cut(s)	870
Cfr10I	RCCGGY	1 cut(s)	726
ClaI	ATCGAT	1 cut(s)	680
CseI	GACGC	1 cut(s)	848
Csp6I	GTAC	3 cut(s)	192, 665, 1060
CviAII	CATG	8 cut(s)	305, 364, 392, 499, 533, 639, 688, 1115
CviQI	GTAC	3 cut(s)	192, 665, 1060
DdeI	CTNAG	5 cut(s)	140, 380, 456, 607, 1094
DpnI	GATC	5 cut(s)	27, 253, 486, 700, 916
DpnII	GATC	5 cut(s)	25, 251, 484, 698, 914
DraI	TTTAAA	1 cut(s)	616
EaeI	YGGCCR	1 cut(s)	325
EciI	GGCGGA	1 cut(s)	238
Eco130I	CCWWGG	4 cut(s)	120, 629, 878, 931
Eco24I	GRGCYC	1 cut(s)	1020
Eco57I	CTGAAG	2 cut(s)	228, 341
EcoRI	GAATTC	2 cut(s)	131, 1010
EcoT14I	CCWWGG	4 cut(s)	120, 629, 878, 931
EcoT38I	GRGCYC	1 cut(s)	1020
ErhI	CCWWGG	4 cut(s)	120, 629, 878, 931
Esp3I	CGTCTC	1 cut(s)	272
FaeI	CATG	8 cut(s)	308, 367, 395, 502, 536, 642, 691, 1118
FalI	AAGNNNNNCTT	2 cut(s)	389, 421
FaqI	GGGAC	1 cut(s)	695
FatI	CATG	8 cut(s)	304, 363, 391, 498, 532, 638, 687, 1114
FauNDI	CATATG	1 cut(s)	864
FbaI	TGATCA	1 cut(s)	25
FblI	GTMKAC	1 cut(s)	537
Fnu4HI	GCNGC	1 cut(s)	521
FokI	GGATG	4 cut(s)	58, 184, 452, 1084
FriOI	GRGCYC	1 cut(s)	1020
Fsp4HI	GCNGC	1 cut(s)	521
FspAI	RTGCGCAY	1 cut(s)	869
FspBI	CTAG	1 cut(s)	723
FspI	TGCGCA	1 cut(s)	869
GlaI	GCGC	1 cut(s)	869
GluI	GCNGC	1 cut(s)	521
HaeIII	GGCC	2 cut(s)	327, 751
HapII	CCGG	2 cut(s)	271, 727
HgaI	GACGC	1 cut(s)	848
HhaI	GCGC	1 cut(s)	870
Hin1II	CATG	8 cut(s)	308, 367, 395, 502, 536, 642, 691, 1118
Hin6I	GCGC	1 cut(s)	868
HinP1I	GCGC	1 cut(s)	868
HincII	GTYRAC	2 cut(s)	148, 530
HindII	GTYRAC	2 cut(s)	148, 530
HindIII	AAGCTT	3 cut(s)	428, 1155, 1235
HinfI	GANTC	4 cut(s)	318, 400, 467, 1111
HpaII	CCGG	2 cut(s)	271, 727
HphI	GGTGA	1 cut(s)	35
Hpy166II	GTNNAC	4 cut(s)	148, 276, 530, 538
Hpy188I	TCNGA	6 cut(s)	46, 457, 610, 847, 1095, 1140
Hpy188III	TCNNGA	4 cut(s)	29, 364, 734, 1115
Hpy8I	GTNNAC	4 cut(s)	148, 276, 530, 538
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	2 cut(s)	203, 588
HpyCH4III	ACNGT	3 cut(s)	557, 694, 709
HpyCH4IV	ACGT	1 cut(s)	624
HpyCH4V	TGCA	4 cut(s)	197, 409, 498, 505
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 865
HpyF3I	CTNAG	5 cut(s)	140, 380, 456, 607, 1094
HpySE526I	ACGT	1 cut(s)	624
Hsp92II	CATG	8 cut(s)	308, 367, 395, 502, 536, 642, 691, 1118
HspAI	GCGC	1 cut(s)	868
Ksp22I	TGATCA	1 cut(s)	25
Kzo9I	GATC	5 cut(s)	25, 251, 484, 698, 914
LmnI	GCTCC	1 cut(s)	1212
Lsp1109I	GCAGC	1 cut(s)	532
LweI	GCATC	2 cut(s)	206, 1062
MaeI	CTAG	1 cut(s)	723
MaeII	ACGT	1 cut(s)	624
MaeIII	GTNAC	2 cut(s)	401, 819
MalI	GATC	5 cut(s)	27, 253, 486, 700, 916
MboI	GATC	5 cut(s)	25, 251, 484, 698, 914
MfeI	CAATTG	1 cut(s)	59
MhlI	GDGCHC	1 cut(s)	1020
MlsI	TGGCCA	1 cut(s)	327
MluI	ACGCGT	1 cut(s)	473
MluNI	TGGCCA	1 cut(s)	327
MlyI	GAGTC	2 cut(s)	312, 409
MmeI	TCCRAC	2 cut(s)	764, 1156
Mox20I	TGGCCA	1 cut(s)	327
MscI	TGGCCA	1 cut(s)	327
MseI	TTAA	4 cut(s)	516, 615, 768, 1179
MslI	CAYNNNNRTG	2 cut(s)	368, 692
Msp20I	TGGCCA	1 cut(s)	327
MspI	CCGG	2 cut(s)	271, 727
MunI	CAATTG	1 cut(s)	59
MvnI	CGCG	1 cut(s)	475
MwoI	GCNNNNNNNGC	2 cut(s)	203, 865
NdeI	CATATG	1 cut(s)	864
NdeII	GATC	5 cut(s)	25, 251, 484, 698, 914
NlaIII	CATG	8 cut(s)	308, 367, 395, 502, 536, 642, 691, 1118
NlaIV	GGNNCC	1 cut(s)	929
NmuCI	GTSAC	2 cut(s)	401, 819
NsbI	TGCGCA	1 cut(s)	869
NspI	RCATGY	3 cut(s)	395, 502, 536
NspV	TTCGAA	1 cut(s)	135
PagI	TCATGA	2 cut(s)	363, 1114
PciI	ACATGT	1 cut(s)	532
PcsI	WCGNNNNNNNCGW	2 cut(s)	156, 698
PfeI	GAWTC	2 cut(s)	467, 1111
PkrI	GCNGC	1 cut(s)	522
Ple19I	CGATCG	1 cut(s)	701
PleI	GAGTC	2 cut(s)	312, 408
PpsI	GAGTC	2 cut(s)	312, 408
PscI	ACATGT	1 cut(s)	532
PshAI	GACNNNNGTC	1 cut(s)	707
PsiI	TTATAA	1 cut(s)	831
Psp1406I	AACGTT	1 cut(s)	624
PspN4I	GGNNCC	1 cut(s)	929
PvuI	CGATCG	1 cut(s)	701
RsaI	GTAC	3 cut(s)	193, 666, 1061
RsaNI	GTAC	3 cut(s)	192, 665, 1060
RseI	CAYNNNNRTG	2 cut(s)	368, 692
SaqAI	TTAA	4 cut(s)	516, 615, 768, 1179
SatI	GCNGC	1 cut(s)	521
Sau3AI	GATC	5 cut(s)	25, 251, 484, 698, 914
ScaI	AGTACT	1 cut(s)	193
SchI	GAGTC	2 cut(s)	312, 409
SduI	GDGCHC	1 cut(s)	1020
SfaNI	GCATC	2 cut(s)	206, 1062
SfuI	TTCGAA	1 cut(s)	135
SmiMI	CAYNNNNRTG	2 cut(s)	368, 692
SmlI	CTYRAG	3 cut(s)	734, 1031, 1202
SmoI	CTYRAG	3 cut(s)	734, 1031, 1202
SsiI	CCGC	2 cut(s)	223, 955
SspMI	CTAG	1 cut(s)	723
StyI	CCWWGG	4 cut(s)	120, 629, 878, 931
TaaI	ACNGT	3 cut(s)	557, 694, 709
TaiI	ACGT	1 cut(s)	627
TaqI	TCGA	6 cut(s)	135, 254, 418, 680, 701, 1014
TatI	WGTACW	3 cut(s)	191, 664, 1059
TfiI	GAWTC	2 cut(s)	467, 1111
Tru1I	TTAA	4 cut(s)	516, 615, 768, 1179
Tru9I	TTAA	4 cut(s)	516, 615, 768, 1179
TscAI	CASTG	1 cut(s)	208
TseFI	GTSAC	2 cut(s)	401, 819
TseI	GCWGC	1 cut(s)	520
Tsp45I	GTSAC	2 cut(s)	401, 819
TspDTI	ATGAA	6 cut(s)	102, 231, 293, 380, 960, 1176
TspGWI	ACGGA	1 cut(s)	563
TspRI	CASTG	1 cut(s)	208
XapI	RAATTY	3 cut(s)	131, 967, 1010
XceI	RCATGY	3 cut(s)	395, 502, 536
XmiI	GTMKAC	1 cut(s)	537
XspI	CTAG	1 cut(s)	723
ZrmI	AGTACT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.