FvH4_3g07670
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0005527
Physical Location & Seq
Forward (+)
4514373 .. 4518127
3755 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g07670.t3

Sequence Viewer

Length: 1149 bp
ATGAGGAATGAGCTGGAGTTAATTGGTGACCTTGGTGATCAAAAACGAAAGACTGACAAGATTAGTGAGGAACAAGCAGAAAACATATCGGTGGAGTCTTCCCAGAAATGCTCATCCTTTGATCTGAATGAAGATGTTAGCGATAATAGCGACAATGATAATAGCAATTATACCAGCGTTACTAACCTGGCTGATCATGAACCTAGTTCAGTTAGAAATGATGAAAGAAGAGCCCTAGCACAGGAAAACATGAATAATGCAGCTAATATTATTAGTAATAGCTCTAGGGCTAAAGTAAGGCCATATGTACGATCCAAATTACCTCGTCTCCGGTGGACACCCCAACTCCATCTTTCTTTTTTGCATGCTCTGGAATTACTAGGAGGGCAAGAGAGAGCAACTCCCAAGTTGGTTCTTCAGCTAATGAATGTGAGAGGACTGAGCATTTCCCACGTAAAGAGTCACTTGCAGATGTATCGAAGTAAGAAGCTTGATGGGGATGGTCAAGTAGTATCTGTCAAAACTTACGACTACATGGATGGAAGGGAATCAAGGGATCACATACCTAACTTCGTTCCGAGATCAAATTCTCTGACAAAGAAAGAAGTCGTAAGAGGGAACAATTTTAACAAAGCTTTGCATCATACAAGCACTCCCATAAACCCTGGCCGATTACAAAGCATTAGCAAAAGCTGGAGGGGCAGAAGATTTGCTTCCAACATTATCAATTGGTCAAATTTTCATAATGGCTCGTCCCGATCTGATATATTGCATCATATGATAAGCAATACACAAGGTACAAGACCAAAAGATTATGATCTACATTGTTGGAGCCTTGAAGGTCATAGCAATTCCGGTAGCCATAAACAAGAATGCGAACCACCATTTAGGCTTGAGTGGAACAAAGAAAAGATTTCGAAGTACAAGGAATGGATGCCTCATTTGGAGTTGGGTCTACAGAGCCAAAGAGTTGGGAAGGAGATCAGTGACGAGACTCATCAGCATCATCAGACGGTTAGTCATGAAGAAGAACGTTATGAAATTGCGGAAGGAGTTATAGAAACTTCACAACATTGCAAAGATCATCAATTCGAAGACATGAATAGCAAACAAGAAACTATTAGCACCAAGCTTTCCCTTTCTCTTTAA

Protein Analysis

383

Amino Acids

43.88

Weight (kDa)

7.08

Isoelectric Point (pI)

53.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 109 - 160 3e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 955
AciI CCGC 1 cut(s) 1046
AclI AACGTT 1 cut(s) 1033
AclWI GGATC 2 cut(s) 306, 564
AcoI YGGCCR 1 cut(s) 667
AcsI RAATTY 2 cut(s) 586, 736
AcuI CTGAAG 1 cut(s) 401
AfaI GTAC 3 cut(s) 309, 799, 923
AfiI CCNNNNNNNGG 1 cut(s) 241
AgsI TTSAA 1 cut(s) 839
AhdI GACNNNNNGTC 1 cut(s) 1017
AjnI CCWGG 2 cut(s) 186, 664
AluBI AGCT 8 cut(s) 13, 263, 282, 421, 490, 635, 693, 1132
AluI AGCT 8 cut(s) 13, 263, 282, 421, 490, 635, 693, 1132
Alw26I GTCTC 2 cut(s) 332, 986
AlwI GGATC 2 cut(s) 306, 564
AoxI GGCC 2 cut(s) 299, 667
ApeKI GCWGC 1 cut(s) 260
ApoI RAATTY 2 cut(s) 586, 736
AsuHPI GGTGA 2 cut(s) 38, 47
AsuII TTCGAA 2 cut(s) 917, 1092
BanII GRGCYC 1 cut(s) 235
BbsI GAAGAC 2 cut(s) 90, 1101
BbvI GCAGC 1 cut(s) 272
BccI CCATC 4 cut(s) 357, 488, 494, 533
BcgI CGANNNNNNTGC 2 cut(s) 458, 492
BciT130I CCWGG 2 cut(s) 188, 666
BclI TGATCA 2 cut(s) 37, 193
BcoDI GTCTC 2 cut(s) 332, 986
BfaI CTAG 4 cut(s) 204, 236, 285, 380
BfmI CTRYAG 1 cut(s) 956
BisI GCNGC 1 cut(s) 261
BlsI GCNGC 1 cut(s) 262
Bme1390I CCNGG 2 cut(s) 188, 666
BmeRI GACNNNNNGTC 1 cut(s) 1017
BmiI GGNNCC 1 cut(s) 833
BmrFI CCNGG 2 cut(s) 188, 666
BmsI GCATC 4 cut(s) 649, 781, 924, 1012
BpiI GAAGAC 2 cut(s) 90, 1101
BplI GAGNNNNNCTC 2 cut(s) 385, 417
BpmI CTGGAG 2 cut(s) 35, 715
Bpu14I TTCGAA 2 cut(s) 917, 1092
BpuEI CTTGAG 1 cut(s) 914
BsaAI YACGTR 1 cut(s) 454
BsaBI GATNNNNATC 1 cut(s) 816
BsaJI CCNNGG 2 cut(s) 31, 664
BsaWI WCCGGW 2 cut(s) 330, 854
BsaXI ACNNNNNCTCC 6 cut(s) 312, 330, 342, 360, 637, 667
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse3DI GCAATG 1 cut(s) 1072
Bse8I GATNNNNATC 1 cut(s) 816
BseBI CCWGG 2 cut(s) 188, 666
BseDI CCNNGG 2 cut(s) 31, 664
BseGI GGATG 4 cut(s) 113, 505, 544, 939
BseJI GATNNNNATC 1 cut(s) 816
BseLI CCNNNNNNNGG 1 cut(s) 241
BseMI GCAATG 1 cut(s) 1072
BseMII CTCAG 1 cut(s) 431
BseXI GCAGC 1 cut(s) 272
BshFI GGCC 2 cut(s) 301, 669
BsiSI CCGG 2 cut(s) 331, 855
BslFI GGGAC 1 cut(s) 739
BslI CCNNNNNNNGG 1 cut(s) 241
BsmAI GTCTC 2 cut(s) 332, 986
BsmBI CGTCTC 1 cut(s) 332
BsmFI GGGAC 1 cut(s) 739
BsmI GAATGC 1 cut(s) 878
BsnI GGCC 2 cut(s) 301, 669
Bsp119I TTCGAA 2 cut(s) 917, 1092
Bsp1286I GDGCHC 1 cut(s) 235
BspACI CCGC 1 cut(s) 1046
BspANI GGCC 2 cut(s) 301, 669
BspCNI CTCAG 1 cut(s) 432
BspHI TCATGA 2 cut(s) 196, 1021
BspLI GGNNCC 1 cut(s) 833
BspPI GGATC 2 cut(s) 306, 564
BspQI GCTCTTC 1 cut(s) 223
BspT104I TTCGAA 2 cut(s) 917, 1092
BsrDI GCAATG 1 cut(s) 1072
BssECI CCNNGG 2 cut(s) 31, 664
BssT1I CCWWGG 1 cut(s) 31
Bst2UI CCWGG 2 cut(s) 188, 666
Bst4CI ACNGT 1 cut(s) 1015
Bst6I CTCTTC 1 cut(s) 223
BstBAI YACGTR 1 cut(s) 454
BstBI TTCGAA 2 cut(s) 917, 1092
BstC8I GCNNGC 1 cut(s) 366
BstDEI CTNAG 1 cut(s) 440
BstEII GGTNACC 1 cut(s) 26
BstENI CCTNNNNNAGG 1 cut(s) 239
BstF5I GGATG 4 cut(s) 113, 505, 544, 939
BstMAI GTCTC 2 cut(s) 332, 986
BstMWI GCNNNNNNNGC 2 cut(s) 147, 699
BstNI CCWGG 2 cut(s) 188, 666
BstNSI RCATGY 1 cut(s) 368
BstPI GGTNACC 1 cut(s) 26
BstSCI CCNGG 2 cut(s) 186, 664
BstSFI CTRYAG 1 cut(s) 956
BstV1I GCAGC 1 cut(s) 272
BstV2I GAAGAC 2 cut(s) 90, 1101
BstXI CCANNNNNNTGG 1 cut(s) 971
BsuRI GGCC 2 cut(s) 301, 669
BtsCI GGATG 4 cut(s) 113, 505, 544, 939
BtsIMutI CAGTG 1 cut(s) 991
Cac8I GCNNGC 1 cut(s) 366
CciI TCATGA 2 cut(s) 196, 1021
Csp6I GTAC 3 cut(s) 308, 798, 922
CviAII CATG 6 cut(s) 197, 250, 365, 535, 1022, 1099
CviQI GTAC 3 cut(s) 308, 798, 922
DdeI CTNAG 1 cut(s) 440
DriI GACNNNNNGTC 1 cut(s) 1017
EaeI YGGCCR 1 cut(s) 667
Eam1104I CTCTTC 1 cut(s) 223
Eam1105I GACNNNNNGTC 1 cut(s) 1017
EarI CTCTTC 1 cut(s) 223
Eco130I CCWWGG 1 cut(s) 31
Eco24I GRGCYC 1 cut(s) 235
Eco57I CTGAAG 1 cut(s) 401
Eco91I GGTNACC 1 cut(s) 26
EcoNI CCTNNNNNAGG 1 cut(s) 239
EcoO65I GGTNACC 1 cut(s) 26
EcoRII CCWGG 2 cut(s) 186, 664
EcoT14I CCWWGG 1 cut(s) 31
EcoT38I GRGCYC 1 cut(s) 235
ErhI CCWWGG 1 cut(s) 31
Esp3I CGTCTC 1 cut(s) 332
FaeI CATG 6 cut(s) 200, 253, 368, 538, 1025, 1102
FalI AAGNNNNNCTT 4 cut(s) 449, 481, 697, 729
FaqI GGGAC 1 cut(s) 739
FatI CATG 6 cut(s) 196, 249, 364, 534, 1021, 1098
FauNDI CATATG 2 cut(s) 304, 777
FbaI TGATCA 2 cut(s) 37, 193
FblI GTMKAC 1 cut(s) 955
Fnu4HI GCNGC 1 cut(s) 261
FokI GGATG 4 cut(s) 100, 512, 551, 946
FriOI GRGCYC 1 cut(s) 235
Fsp4HI GCNGC 1 cut(s) 261
FspBI CTAG 4 cut(s) 204, 236, 285, 380
GluI GCNGC 1 cut(s) 261
GsuI CTGGAG 2 cut(s) 35, 715
HaeIII GGCC 2 cut(s) 301, 669
HapII CCGG 2 cut(s) 331, 855
Hin1II CATG 6 cut(s) 200, 253, 368, 538, 1025, 1102
HindIII AAGCTT 3 cut(s) 488, 633, 1130
HinfI GANTC 4 cut(s) 95, 460, 548, 994
HpaII CCGG 2 cut(s) 331, 855
HphI GGTGA 2 cut(s) 38, 47
Hpy166II GTNNAC 2 cut(s) 336, 956
Hpy188I TCNGA 5 cut(s) 126, 579, 594, 763, 1011
Hpy188III TCNNGA 4 cut(s) 197, 371, 756, 1022
Hpy8I GTNNAC 2 cut(s) 336, 956
HpyAV CCTTC 4 cut(s) 537, 833, 970, 1043
HpyCH4III ACNGT 1 cut(s) 1015
HpyCH4IV ACGT 2 cut(s) 453, 1033
HpyCH4V TGCA 6 cut(s) 260, 364, 469, 640, 772, 1077
HpyF10VI GCNNNNNNNGC 2 cut(s) 147, 699
HpyF3I CTNAG 1 cut(s) 440
HpySE526I ACGT 2 cut(s) 453, 1033
Hsp92II CATG 6 cut(s) 200, 253, 368, 538, 1025, 1102
Ksp22I TGATCA 2 cut(s) 37, 193
LguI GCTCTTC 1 cut(s) 223
LmnI GCTCC 1 cut(s) 831
Lsp1109I GCAGC 1 cut(s) 272
LweI GCATC 4 cut(s) 649, 781, 924, 1012
MaeI CTAG 4 cut(s) 204, 236, 285, 380
MaeII ACGT 2 cut(s) 453, 1033
MaeIII GTNAC 4 cut(s) 26, 178, 461, 986
MboII GAAGA 8 cut(s) 90, 143, 240, 407, 717, 1037, 1040, 1106
MfeI CAATTG 1 cut(s) 727
MhlI GDGCHC 1 cut(s) 235
MlyI GAGTC 3 cut(s) 104, 469, 988
MmeI TCCRAC 2 cut(s) 741, 809
MnlI CCTC 7 cut(s) 61, 333, 377, 428, 608, 690, 948
MseI TTAA 3 cut(s) 20, 627, 1147
MslI CAYNNNNRTG 1 cut(s) 89
MspI CCGG 2 cut(s) 331, 855
MspR9I CCNGG 2 cut(s) 188, 666
MunI CAATTG 1 cut(s) 727
Mva1269I GAATGC 1 cut(s) 878
MvaI CCWGG 2 cut(s) 188, 666
MwoI GCNNNNNNNGC 2 cut(s) 147, 699
NdeI CATATG 2 cut(s) 304, 777
NlaIII CATG 6 cut(s) 200, 253, 368, 538, 1025, 1102
NlaIV GGNNCC 1 cut(s) 833
NmuCI GTSAC 3 cut(s) 26, 461, 986
NspI RCATGY 1 cut(s) 368
NspV TTCGAA 2 cut(s) 917, 1092
PaeI GCATGC 1 cut(s) 368
PagI TCATGA 2 cut(s) 196, 1021
PciSI GCTCTTC 1 cut(s) 223
PctI GAATGC 1 cut(s) 878
PfeI GAWTC 1 cut(s) 548
PkrI GCNGC 1 cut(s) 262
PleI GAGTC 3 cut(s) 103, 468, 988
PpsI GAGTC 3 cut(s) 103, 468, 988
Ppu21I YACGTR 1 cut(s) 454
Psp1406I AACGTT 1 cut(s) 1033
Psp6I CCWGG 2 cut(s) 186, 664
PspEI GGTNACC 1 cut(s) 26
PspGI CCWGG 2 cut(s) 186, 664
PspN4I GGNNCC 1 cut(s) 833
RsaI GTAC 3 cut(s) 309, 799, 923
RsaNI GTAC 3 cut(s) 308, 798, 922
RseI CAYNNNNRTG 1 cut(s) 89
SapI GCTCTTC 1 cut(s) 223
SaqAI TTAA 3 cut(s) 20, 627, 1147
SatI GCNGC 1 cut(s) 261
SchI GAGTC 3 cut(s) 104, 469, 988
ScrFI CCNGG 2 cut(s) 188, 666
SduI GDGCHC 1 cut(s) 235
SfaNI GCATC 4 cut(s) 649, 781, 924, 1012
SfcI CTRYAG 1 cut(s) 956
SfuI TTCGAA 2 cut(s) 917, 1092
SmiMI CAYNNNNRTG 1 cut(s) 89
SmlI CTYRAG 1 cut(s) 893
SmoI CTYRAG 1 cut(s) 893
SphI GCATGC 1 cut(s) 368
SsiI CCGC 1 cut(s) 1046
SspI AATATT 1 cut(s) 268
SspMI CTAG 4 cut(s) 204, 236, 285, 380
StyD4I CCNGG 2 cut(s) 186, 664
StyI CCWWGG 1 cut(s) 31
TaaI ACNGT 1 cut(s) 1015
TaiI ACGT 2 cut(s) 456, 1036
TaqI TCGA 3 cut(s) 478, 917, 1092
TatI WGTACW 1 cut(s) 921
TfiI GAWTC 1 cut(s) 548
Tru1I TTAA 3 cut(s) 20, 627, 1147
Tru9I TTAA 3 cut(s) 20, 627, 1147
TscAI CASTG 1 cut(s) 991
TseFI GTSAC 3 cut(s) 26, 461, 986
TseI GCWGC 1 cut(s) 260
Tsp45I GTSAC 3 cut(s) 26, 461, 986
TspDTI ATGAA 9 cut(s) 144, 213, 237, 266, 440, 731, 1038, 1053, 1115
TspRI CASTG 1 cut(s) 991
XagI CCTNNNNNAGG 1 cut(s) 239
XapI RAATTY 2 cut(s) 586, 736
XceI RCATGY 1 cut(s) 368
XmiI GTMKAC 1 cut(s) 955
XspI CTAG 4 cut(s) 204, 236, 285, 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.