RLG00000031802
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0005527
Physical Location & Seq
Reverse (-)
8348655 .. 8351990
3336 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031802

Sequence Viewer

Length: 1296 bp
ATGGACACAGAAAAGCAGGTGCATGTTGTTATGGGAAAAAGTCCGATTTTAGTCGCATCTGATCTTTTACCCATAAAGACCAAAAATAATAATTGGGTTGGCCAGCAAATTGTTCGATCAACTGCAAGAAGGATTGAGCAGGCACGCAGCAATTGTAACCAGCTGATTAAGAAGAAACAATTCATCCGTACATCTTGGGAATTTGAGGACCACGCAGAAAACATATCGGTGGGTTCTTCCCAGAAATGCTCATGCTTTGATTTAAATGAAGAAGCTAGCGATAACAGCGACAATGATATTAGCAATGCCAACGTTAACCTGGCTGATCATGAACTTGCTACAGTTAGAAATGATGAAAGAAGAGCCCTAGCCCAGGGAAACATTAATAGTAATGCAGCTAATATTAGTAATAGCTCTAGGGTTAAAGTAAGGCCATATGTACGATCCAAACTACCTCGTCTGCGGTGGACACCCCAACTCCATCTTTCATTTTTGCATGCTTTGGAATTACTGGGAGGGCATGAGAGAGCGACTCCCAAGTTGGTTCTTCAGCTAATGAATGTGAGAGGACTAAGCATTTCCCACGTAAAGAGTCACTTGCAGATGTATCGAAGTAAGAAGCTTGATAGGGATGGTCAAGTAGTATCTGATGAGAAAAGTTACGACTACACGGATGGAAGAGAATCAAGGGATCACATACCTAACTTCGTTTCGAGGTCAAGTTCTCTGACAAAGAAAGAAGTCGTACAAGGCAACAATTTGAACAAAGCTTTGCATCATACAAGCACTCCCGTAAACCCTAGCCGATTACATGAGGAAAAGAGGTGGCCTCCATTTCAAAGCATTAGCAAAAGCTGGAGGGCCAGAAGATTTGCTTCCAACAATATCAATTGGTCAAGTAGTCATAATGGCTCATCCCAATCTGATATAATGCATCATATGATTAGCAACAGACCAACAGATCATGATCTACGTTGTTGGAACCTTGAAGGTCATAGCAATTCAAGTAGCTACAAACAAGAATTCGAACCGCCATTTAGGCTTGAGTGGAACAAGGAAAAAATTTTGAAGTACAAGGAATGGATGCCTGATTTGGAGTTGGGTCTGCAGAGCCAAAGAGTTTGGAATGAGATCAATGACGAGACTCAGCATCATCAGACGATTAGTCACGCAGAAGAACATTATGAAACTGGGCAAGGAGTTATAGAGACTTCACAACATTACAAAGATCATCAATTCGAGGACATGAATAGCAATCAAGAAACTATTAGCACCAAGCTTTCCCTTTCTCTTTAA

Protein Analysis

432

Amino Acids

49.74

Weight (kDa)

8.51

Isoelectric Point (pI)

59.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 153 - 204 4.3e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 7
Acc36I ACCTGC 1 cut(s) 7
AciI CCGC 2 cut(s) 463, 1031
AclI AACGTT 1 cut(s) 312
AclWI GGATC 2 cut(s) 438, 699
AcoI YGGCCR 1 cut(s) 100
AcsI RAATTY 3 cut(s) 200, 1022, 1062
AcuI CTGAAG 1 cut(s) 533
AfaI GTAC 4 cut(s) 190, 441, 747, 1073
AfiI CCNNNNNNNGG 1 cut(s) 373
AgsI TTSAA 5 cut(s) 763, 839, 989, 1005, 1069
AhdI GACNNNNNGTC 1 cut(s) 1164
AjnI CCWGG 2 cut(s) 318, 372
Alw26I GTCTC 2 cut(s) 1136, 1202
AlwI GGATC 2 cut(s) 438, 699
AoxI GGCC 4 cut(s) 100, 431, 827, 861
ApeKI GCWGC 2 cut(s) 147, 395
ApoI RAATTY 3 cut(s) 200, 1022, 1062
AseI ATTAAT 1 cut(s) 384
Asp700I GAANNNNTTC 1 cut(s) 179
AspS9I GGNCC 2 cut(s) 208, 861
AsuII TTCGAA 1 cut(s) 1026
AsuNHI GCTAGC 1 cut(s) 275
AvaII GGWCC 1 cut(s) 208
BalI TGGCCA 1 cut(s) 102
BanII GRGCYC 1 cut(s) 367
BbvI GCAGC 2 cut(s) 159, 407
BccI CCATC 3 cut(s) 489, 626, 668
BcgI CGANNNNNNTGC 4 cut(s) 95, 129, 590, 624
BciT130I CCWGG 2 cut(s) 320, 374
BclI TGATCA 1 cut(s) 325
BcoDI GTCTC 2 cut(s) 1136, 1202
BfaI CTAG 4 cut(s) 276, 368, 417, 801
BfmI CTRYAG 2 cut(s) 339, 1106
BfuAI ACCTGC 1 cut(s) 7
BglI GCCNNNNNGGC 1 cut(s) 1039
BisI GCNGC 2 cut(s) 148, 396
BlsI GCNGC 2 cut(s) 149, 397
Bme1390I CCNGG 2 cut(s) 320, 374
Bme18I GGWCC 1 cut(s) 208
BmeRI GACNNNNNGTC 1 cut(s) 1164
BmgT120I GGNCC 2 cut(s) 208, 861
BmiI GGNNCC 1 cut(s) 983
BmrFI CCNGG 2 cut(s) 320, 374
BmrI ACTGGG 2 cut(s) 521, 1200
BmsI GCATC 5 cut(s) 65, 784, 943, 1074, 1159
BmtI GCTAGC 1 cut(s) 279
BmuI ACTGGG 2 cut(s) 521, 1200
BplI GAGNNNNNCTC 4 cut(s) 517, 549, 814, 846
BpmI CTGGAG 1 cut(s) 877
Bpu14I TTCGAA 1 cut(s) 1026
BpuEI CTTGAG 1 cut(s) 1064
BsaAI YACGTR 1 cut(s) 586
BsaBI GATNNNNATC 1 cut(s) 966
BsaJI CCNNGG 2 cut(s) 372, 373
BsaXI ACNNNNNCTCC 4 cut(s) 462, 492, 772, 802
Bsc4I CCNNNNNNNGG 1 cut(s) 373
Bse1I ACTGG 2 cut(s) 516, 1195
Bse3DI GCAATG 1 cut(s) 310
Bse8I GATNNNNATC 1 cut(s) 966
BseBI CCWGG 2 cut(s) 320, 374
BseDI CCNNGG 2 cut(s) 372, 373
BseGI GGATG 5 cut(s) 183, 637, 679, 914, 1089
BseJI GATNNNNATC 1 cut(s) 966
BseLI CCNNNNNNNGG 1 cut(s) 373
BseMI GCAATG 1 cut(s) 310
BseMII CTCAG 1 cut(s) 1160
BseNI ACTGG 2 cut(s) 516, 1195
BseXI GCAGC 2 cut(s) 159, 407
BshFI GGCC 4 cut(s) 102, 433, 829, 863
BslI CCNNNNNNNGG 1 cut(s) 373
BsmAI GTCTC 2 cut(s) 1136, 1202
BsnI GGCC 4 cut(s) 102, 433, 829, 863
Bsp119I TTCGAA 1 cut(s) 1026
Bsp1286I GDGCHC 1 cut(s) 367
Bsp143I GATC 9 cut(s) 61, 116, 325, 443, 691, 961, 967, 1131, 1228
BspACI CCGC 2 cut(s) 463, 1031
BspANI GGCC 4 cut(s) 102, 433, 829, 863
BspCNI CTCAG 1 cut(s) 1159
BspHI TCATGA 2 cut(s) 328, 964
BspLI GGNNCC 1 cut(s) 983
BspMAI CTGCAG 1 cut(s) 1110
BspMI ACCTGC 1 cut(s) 7
BspOI GCTAGC 1 cut(s) 279
BspPI GGATC 2 cut(s) 438, 699
BspQI GCTCTTC 1 cut(s) 355
BspT104I TTCGAA 1 cut(s) 1026
BsrDI GCAATG 1 cut(s) 310
BsrI ACTGG 2 cut(s) 516, 1195
BssECI CCNNGG 2 cut(s) 372, 373
BssMI GATC 9 cut(s) 61, 116, 325, 443, 691, 961, 967, 1131, 1228
Bst2UI CCWGG 2 cut(s) 320, 374
Bst4CI ACNGT 1 cut(s) 343
Bst6I CTCTTC 2 cut(s) 355, 673
BstBAI YACGTR 1 cut(s) 586
BstBI TTCGAA 1 cut(s) 1026
BstC8I GCNNGC 5 cut(s) 104, 141, 145, 277, 498
BstDEI CTNAG 2 cut(s) 572, 1146
BstENI CCTNNNNNAGG 1 cut(s) 371
BstF5I GGATG 5 cut(s) 183, 637, 679, 914, 1089
BstKTI GATC 9 cut(s) 64, 119, 328, 446, 694, 964, 970, 1134, 1231
BstMAI GTCTC 2 cut(s) 1136, 1202
BstMBI GATC 9 cut(s) 61, 116, 325, 443, 691, 961, 967, 1131, 1228
BstMWI GCNNNNNNNGC 2 cut(s) 285, 1039
BstNI CCWGG 2 cut(s) 320, 374
BstNSI RCATGY 2 cut(s) 26, 500
BstSCI CCNGG 2 cut(s) 318, 372
BstSFI CTRYAG 2 cut(s) 339, 1106
BstV1I GCAGC 2 cut(s) 159, 407
BsuRI GGCC 4 cut(s) 102, 433, 829, 863
BtsCI GGATG 5 cut(s) 183, 637, 679, 914, 1089
BveI ACCTGC 1 cut(s) 7
Cac8I GCNNGC 5 cut(s) 104, 141, 145, 277, 498
CciI TCATGA 2 cut(s) 328, 964
Cfr13I GGNCC 2 cut(s) 208, 861
Csp6I GTAC 4 cut(s) 189, 440, 746, 1072
CviAII CATG 8 cut(s) 23, 252, 329, 497, 521, 812, 965, 1246
CviQI GTAC 4 cut(s) 189, 440, 746, 1072
DdeI CTNAG 2 cut(s) 572, 1146
DpnI GATC 9 cut(s) 63, 118, 327, 445, 693, 963, 969, 1133, 1230
DpnII GATC 9 cut(s) 61, 116, 325, 443, 691, 961, 967, 1131, 1228
DraI TTTAAA 1 cut(s) 264
DriI GACNNNNNGTC 1 cut(s) 1164
EaeI YGGCCR 1 cut(s) 100
Eam1104I CTCTTC 2 cut(s) 355, 673
Eam1105I GACNNNNNGTC 1 cut(s) 1164
EarI CTCTTC 2 cut(s) 355, 673
Eco24I GRGCYC 1 cut(s) 367
Eco47I GGWCC 1 cut(s) 208
Eco57I CTGAAG 1 cut(s) 533
EcoNI CCTNNNNNAGG 1 cut(s) 371
EcoRI GAATTC 1 cut(s) 1022
EcoRII CCWGG 2 cut(s) 318, 372
EcoT22I ATGCAT 1 cut(s) 936
EcoT38I GRGCYC 1 cut(s) 367
FaeI CATG 8 cut(s) 26, 255, 332, 500, 524, 815, 968, 1249
FalI AAGNNNNNCTT 4 cut(s) 581, 613, 859, 891
FatI CATG 8 cut(s) 22, 251, 328, 496, 520, 811, 964, 1245
FauNDI CATATG 2 cut(s) 436, 939
FbaI TGATCA 1 cut(s) 325
Fnu4HI GCNGC 2 cut(s) 148, 396
FokI GGATG 5 cut(s) 170, 644, 686, 901, 1096
FriOI GRGCYC 1 cut(s) 367
Fsp4HI GCNGC 2 cut(s) 148, 396
FspBI CTAG 4 cut(s) 276, 368, 417, 801
GluI GCNGC 2 cut(s) 148, 396
GsuI CTGGAG 1 cut(s) 877
HaeIII GGCC 4 cut(s) 102, 433, 829, 863
Hin1II CATG 8 cut(s) 26, 255, 332, 500, 524, 815, 968, 1249
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HindIII AAGCTT 3 cut(s) 620, 768, 1277
HinfI GANTC 4 cut(s) 532, 592, 683, 1144
HpaI GTTAAC 1 cut(s) 316
Hpy166II GTNNAC 3 cut(s) 316, 468, 796
Hpy188I TCNGA 6 cut(s) 45, 61, 649, 729, 925, 1158
Hpy188III TCNNGA 3 cut(s) 329, 965, 1259
Hpy8I GTNNAC 3 cut(s) 316, 468, 796
HpyAV CCTTC 2 cut(s) 123, 983
HpyCH4III ACNGT 1 cut(s) 343
HpyCH4IV ACGT 3 cut(s) 312, 585, 973
HpyCH4V TGCA 8 cut(s) 22, 125, 395, 496, 601, 775, 934, 1108
HpyF10VI GCNNNNNNNGC 2 cut(s) 285, 1039
HpyF3I CTNAG 2 cut(s) 572, 1146
HpySE526I ACGT 3 cut(s) 312, 585, 973
Hsp92II CATG 8 cut(s) 26, 255, 332, 500, 524, 815, 968, 1249
Ksp22I TGATCA 1 cut(s) 325
KspAI GTTAAC 1 cut(s) 316
Kzo9I GATC 9 cut(s) 61, 116, 325, 443, 691, 961, 967, 1131, 1228
LguI GCTCTTC 1 cut(s) 355
Lsp1109I GCAGC 2 cut(s) 159, 407
LweI GCATC 5 cut(s) 65, 784, 943, 1074, 1159
MaeI CTAG 4 cut(s) 276, 368, 417, 801
MaeII ACGT 3 cut(s) 312, 585, 973
MaeIII GTNAC 4 cut(s) 155, 593, 659, 1166
MalI GATC 9 cut(s) 63, 118, 327, 445, 693, 963, 969, 1133, 1230
MboI GATC 9 cut(s) 61, 116, 325, 443, 691, 961, 967, 1131, 1228
MboII GAAGA 8 cut(s) 184, 228, 281, 372, 539, 690, 879, 1187
MfeI CAATTG 2 cut(s) 151, 889
MhlI GDGCHC 1 cut(s) 367
MlsI TGGCCA 1 cut(s) 102
MluNI TGGCCA 1 cut(s) 102
MlyI GAGTC 3 cut(s) 526, 601, 1138
MmeI TCCRAC 2 cut(s) 903, 959
Mox20I TGGCCA 1 cut(s) 102
Mph1103I ATGCAT 1 cut(s) 936
MroXI GAANNNNTTC 1 cut(s) 179
MscI TGGCCA 1 cut(s) 102
MseI TTAA 6 cut(s) 168, 263, 315, 384, 423, 1294
MslI CAYNNNNRTG 1 cut(s) 227
Msp20I TGGCCA 1 cut(s) 102
MspA1I CMGCKG 1 cut(s) 163
MspR9I CCNGG 2 cut(s) 320, 374
MunI CAATTG 2 cut(s) 151, 889
MvaI CCWGG 2 cut(s) 320, 374
MwoI GCNNNNNNNGC 2 cut(s) 285, 1039
NdeI CATATG 2 cut(s) 436, 939
NdeII GATC 9 cut(s) 61, 116, 325, 443, 691, 961, 967, 1131, 1228
NheI GCTAGC 1 cut(s) 275
NlaIII CATG 8 cut(s) 26, 255, 332, 500, 524, 815, 968, 1249
NlaIV GGNNCC 1 cut(s) 983
NmuCI GTSAC 2 cut(s) 593, 1166
NsiI ATGCAT 1 cut(s) 936
NspI RCATGY 2 cut(s) 26, 500
NspV TTCGAA 1 cut(s) 1026
PaeI GCATGC 1 cut(s) 500
PagI TCATGA 2 cut(s) 328, 964
PaqCI CACCTGC 1 cut(s) 7
PasI CCCWGGG 1 cut(s) 373
PciSI GCTCTTC 1 cut(s) 355
PdmI GAANNNNTTC 1 cut(s) 179
PfeI GAWTC 1 cut(s) 683
PkrI GCNGC 2 cut(s) 149, 397
PleI GAGTC 3 cut(s) 526, 600, 1138
PpsI GAGTC 3 cut(s) 526, 600, 1138
Ppu21I YACGTR 1 cut(s) 586
PshBI ATTAAT 1 cut(s) 384
Psp1406I AACGTT 1 cut(s) 312
Psp6I CCWGG 2 cut(s) 318, 372
PspGI CCWGG 2 cut(s) 318, 372
PspN4I GGNNCC 1 cut(s) 983
PspPI GGNCC 2 cut(s) 208, 861
PstI CTGCAG 1 cut(s) 1110
PvuII CAGCTG 1 cut(s) 163
RsaI GTAC 4 cut(s) 190, 441, 747, 1073
RsaNI GTAC 4 cut(s) 189, 440, 746, 1072
RseI CAYNNNNRTG 1 cut(s) 227
SapI GCTCTTC 1 cut(s) 355
SaqAI TTAA 6 cut(s) 168, 263, 315, 384, 423, 1294
SatI GCNGC 2 cut(s) 148, 396
Sau3AI GATC 9 cut(s) 61, 116, 325, 443, 691, 961, 967, 1131, 1228
Sau96I GGNCC 2 cut(s) 208, 861
SchI GAGTC 3 cut(s) 526, 601, 1138
ScrFI CCNGG 2 cut(s) 320, 374
SduI GDGCHC 1 cut(s) 367
SfaNI GCATC 5 cut(s) 65, 784, 943, 1074, 1159
SfcI CTRYAG 2 cut(s) 339, 1106
SfuI TTCGAA 1 cut(s) 1026
SinI GGWCC 1 cut(s) 208
SmiI ATTTAAAT 1 cut(s) 264
SmiMI CAYNNNNRTG 1 cut(s) 227
SmlI CTYRAG 1 cut(s) 1043
SmoI CTYRAG 1 cut(s) 1043
SphI GCATGC 1 cut(s) 500
SsiI CCGC 2 cut(s) 463, 1031
SspI AATATT 1 cut(s) 403
SspMI CTAG 4 cut(s) 276, 368, 417, 801
StyD4I CCNGG 2 cut(s) 318, 372
SwaI ATTTAAAT 1 cut(s) 264
TaaI ACNGT 1 cut(s) 343
TaiI ACGT 3 cut(s) 315, 588, 976
TaqI TCGA 5 cut(s) 115, 610, 713, 1026, 1239
TatI WGTACW 1 cut(s) 1071
TfiI GAWTC 1 cut(s) 683
Tru1I TTAA 6 cut(s) 168, 263, 315, 384, 423, 1294
Tru9I TTAA 6 cut(s) 168, 263, 315, 384, 423, 1294
TseFI GTSAC 2 cut(s) 593, 1166
TseI GCWGC 2 cut(s) 147, 395
Tsp45I GTSAC 2 cut(s) 593, 1166
TspDTI ATGAA 8 cut(s) 172, 282, 345, 369, 477, 572, 1200, 1262
TspGWI ACGGA 2 cut(s) 176, 686
VpaK11BI GGWCC 1 cut(s) 208
VspI ATTAAT 1 cut(s) 384
XagI CCTNNNNNAGG 1 cut(s) 371
XapI RAATTY 3 cut(s) 200, 1022, 1062
XceI RCATGY 2 cut(s) 26, 500
XcmI CCANNNNNNNNNTGG 1 cut(s) 316
XmnI GAANNNNTTC 1 cut(s) 179
XspI CTAG 4 cut(s) 276, 368, 417, 801
Zsp2I ATGCAT 1 cut(s) 936
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.