Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005527

Physical Location & Seq

Genomic Coordinates Reverse (-)

7291160 .. 7291862

Gene Structure 703 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29172

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGAATGAGCTGGAGTTAATTGGTGATCAAAAAGAAAAGACTGACAAAAATATCAGTGAGGACCAAGCAGAAAACATATCGGTGGGTTCTTCCCAGAAATGCTCATGCTTTGATTTAAATGAAGAAGCCAGCGATAACAGCGACAATGATATTAGCAATGCCAACGTTAACCTGGCTGATAATGAACTTAGTACAGTTAGAAATGATGAATGTAGAGCCCTAGCCCAGGGAAACATTAATAGTAATGCAGCTACTATTAGTAATAGCTCTAGGGTTAAAGTAAGGCCATATGTACGATCCAAACTACCTCGTCTGCGGTGGACACCCCAACTCCATCTTTCATTTTTGCATGCTTTGGAATTACTGGGAGGGCATGAGAGTAAGTTTGCAGATTTGAAAGATAACGTAACTTCCTTATTGCATGGTTTTTCTGCTCTGACTCTACTTATTGGTGGTTATACATATACAGGAGCAACTCCCAAGTTGGTTCTTCAGCTAATGAATGTGAGAGGACTAAGTATTTCCCACGTAAAGAGTCACTTGCAGATGTATCGAAGTAAGAAGCTTGATAGGGATGGTCAAGGTAAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

197

Amino Acids

21.77

Weight (kDa)

6.59

Isoelectric Point (pI)

35.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005527)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g07670 FvH4_3g07670 FvH4_3g07670
malus_domestica	MD05G1299300.v1.1 MD10G1278800.v1.1
prunus_persica	Prupe.4G062400_v2.0.a1 Prupe.4G062400_v2.0.a1 Prupe.4G062400_v2.0.a1 Prupe.4G062400_v2.0.a1 Prupe.4G062400_v2.0.a1 Prupe.4G062400_v2.0.a1 Prupe.4G062400_v2.0.a1
pyrus_communis	pycom05g27750 pycom10g23280
rosa_chinensis	RchiOBHm_Chr5g0011011
rosa_laevigata	RLG00000031802
rosa_multiflora	Rmu_sc0003242.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065390
rosa_rugosa	Rorug04G0454300 Rorug04G0454400 Rorug04G0454500 Rorug04G0454500 Rorug04G0454500
rosa_samantha	Rh5AG086700 Rh5BG081300 Rh5CG094100 Rh5DG081200
rosa_wichuraiana	Rw0G000110 Rw0G017840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	316
AclI	AACGTT	1 cut(s)	165
AclWI	GGATC	1 cut(s)	291
AcuI	CTGAAG	1 cut(s)	476
AfaI	GTAC	2 cut(s)	193, 294
AfiI	CCNNNNNNNGG	1 cut(s)	226
AgsI	TTSAA	1 cut(s)	397
AjnI	CCWGG	2 cut(s)	171, 225
AluBI	AGCT	5 cut(s)	10, 251, 267, 496, 565
AluI	AGCT	5 cut(s)	10, 251, 267, 496, 565
AlwI	GGATC	1 cut(s)	291
AoxI	GGCC	1 cut(s)	284
ApeKI	GCWGC	1 cut(s)	248
AseI	ATTAAT	1 cut(s)	237
AspS9I	GGNCC	1 cut(s)	61
AsuHPI	GGTGA	1 cut(s)	35
AvaII	GGWCC	1 cut(s)	61
BanII	GRGCYC	1 cut(s)	220
BbvI	GCAGC	1 cut(s)	260
BccI	CCATC	2 cut(s)	342, 569
BcgI	CGANNNNNNTGC	2 cut(s)	533, 567
BciT130I	CCWGG	2 cut(s)	173, 227
BclI	TGATCA	1 cut(s)	25
BfaI	CTAG	2 cut(s)	221, 270
BisI	GCNGC	1 cut(s)	249
BlsI	GCNGC	1 cut(s)	250
Bme1390I	CCNGG	2 cut(s)	173, 227
Bme18I	GGWCC	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	61
BmrFI	CCNGG	2 cut(s)	173, 227
BmrI	ACTGGG	1 cut(s)	374
BmuI	ACTGGG	1 cut(s)	374
BpmI	CTGGAG	1 cut(s)	32
BsaAI	YACGTR	1 cut(s)	529
BsaJI	CCNNGG	2 cut(s)	225, 226
BsaXI	ACNNNNNCTCC	2 cut(s)	315, 345
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
Bse1I	ACTGG	1 cut(s)	369
Bse3DI	GCAATG	1 cut(s)	163
BseBI	CCWGG	2 cut(s)	173, 227
BseDI	CCNNGG	2 cut(s)	225, 226
BseGI	GGATG	1 cut(s)	580
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseMI	GCAATG	1 cut(s)	163
BseNI	ACTGG	1 cut(s)	369
BseXI	GCAGC	1 cut(s)	260
BshFI	GGCC	1 cut(s)	286
BslI	CCNNNNNNNGG	1 cut(s)	226
BsnI	GGCC	1 cut(s)	286
Bsp1286I	GDGCHC	1 cut(s)	220
Bsp143I	GATC	2 cut(s)	25, 296
BspACI	CCGC	1 cut(s)	316
BspANI	GGCC	1 cut(s)	286
BspPI	GGATC	1 cut(s)	291
BsrDI	GCAATG	1 cut(s)	163
BsrI	ACTGG	1 cut(s)	369
BssECI	CCNNGG	2 cut(s)	225, 226
BssMI	GATC	2 cut(s)	25, 296
Bst2UI	CCWGG	2 cut(s)	173, 227
Bst4CI	ACNGT	1 cut(s)	196
BstBAI	YACGTR	1 cut(s)	529
BstC8I	GCNNGC	2 cut(s)	130, 351
BstDEI	CTNAG	2 cut(s)	188, 515
BstENI	CCTNNNNNAGG	1 cut(s)	224
BstF5I	GGATG	1 cut(s)	580
BstKTI	GATC	2 cut(s)	28, 299
BstMBI	GATC	2 cut(s)	25, 296
BstMWI	GCNNNNNNNGC	1 cut(s)	138
BstNI	CCWGG	2 cut(s)	173, 227
BstNSI	RCATGY	1 cut(s)	353
BstSCI	CCNGG	2 cut(s)	171, 225
BstV1I	GCAGC	1 cut(s)	260
BsuRI	GGCC	1 cut(s)	286
BtsCI	GGATG	1 cut(s)	580
BtsIMutI	CAGTG	1 cut(s)	61
Cac8I	GCNNGC	2 cut(s)	130, 351
Cfr13I	GGNCC	1 cut(s)	61
Csp6I	GTAC	2 cut(s)	192, 293
CviAII	CATG	4 cut(s)	105, 350, 374, 422
CviQI	GTAC	2 cut(s)	192, 293
DdeI	CTNAG	2 cut(s)	188, 515
DpnI	GATC	2 cut(s)	27, 298
DpnII	GATC	2 cut(s)	25, 296
DraI	TTTAAA	1 cut(s)	117
Eco24I	GRGCYC	1 cut(s)	220
Eco47I	GGWCC	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	476
EcoNI	CCTNNNNNAGG	1 cut(s)	224
EcoRII	CCWGG	2 cut(s)	171, 225
EcoT38I	GRGCYC	1 cut(s)	220
FaeI	CATG	4 cut(s)	108, 353, 377, 425
FalI	AAGNNNNNCTT	2 cut(s)	524, 556
FatI	CATG	4 cut(s)	104, 349, 373, 421
FauNDI	CATATG	1 cut(s)	289
FbaI	TGATCA	1 cut(s)	25
Fnu4HI	GCNGC	1 cut(s)	249
FokI	GGATG	1 cut(s)	587
FriOI	GRGCYC	1 cut(s)	220
Fsp4HI	GCNGC	1 cut(s)	249
FspBI	CTAG	2 cut(s)	221, 270
GluI	GCNGC	1 cut(s)	249
GsuI	CTGGAG	1 cut(s)	32
HaeIII	GGCC	1 cut(s)	286
Hin1II	CATG	4 cut(s)	108, 353, 377, 425
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HindIII	AAGCTT	1 cut(s)	563
HinfI	GANTC	2 cut(s)	439, 535
HpaI	GTTAAC	1 cut(s)	169
HphI	GGTGA	1 cut(s)	35
Hpy166II	GTNNAC	2 cut(s)	169, 321
Hpy188I	TCNGA	1 cut(s)	438
Hpy8I	GTNNAC	2 cut(s)	169, 321
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4IV	ACGT	3 cut(s)	165, 405, 528
HpyCH4V	TGCA	5 cut(s)	248, 349, 389, 421, 544
HpyF10VI	GCNNNNNNNGC	1 cut(s)	138
HpyF3I	CTNAG	2 cut(s)	188, 515
HpySE526I	ACGT	3 cut(s)	165, 405, 528
Hsp92II	CATG	4 cut(s)	108, 353, 377, 425
Ksp22I	TGATCA	1 cut(s)	25
KspAI	GTTAAC	1 cut(s)	169
Kzo9I	GATC	2 cut(s)	25, 296
LmnI	GCTCC	1 cut(s)	470
LpnPI	CCDG	8 cut(s)	107, 142, 158, 185, 212, 239, 350, 453
Lsp1109I	GCAGC	1 cut(s)	260
MaeI	CTAG	2 cut(s)	221, 270
MaeII	ACGT	3 cut(s)	165, 405, 528
MaeIII	GTNAC	2 cut(s)	406, 536
MalI	GATC	2 cut(s)	27, 298
MboI	GATC	2 cut(s)	25, 296
MboII	GAAGA	3 cut(s)	81, 134, 482
MhlI	GDGCHC	1 cut(s)	220
MluCI	AATT	2 cut(s)	18, 359
MlyI	GAGTC	2 cut(s)	433, 544
MnlI	CCTC	4 cut(s)	52, 318, 362, 503
MseI	TTAA	5 cut(s)	17, 116, 168, 237, 276
MslI	CAYNNNNRTG	1 cut(s)	80
MspR9I	CCNGG	2 cut(s)	173, 227
MvaI	CCWGG	2 cut(s)	173, 227
MwoI	GCNNNNNNNGC	1 cut(s)	138
NdeI	CATATG	1 cut(s)	289
NdeII	GATC	2 cut(s)	25, 296
NlaIII	CATG	4 cut(s)	108, 353, 377, 425
NmuCI	GTSAC	1 cut(s)	536
NspI	RCATGY	1 cut(s)	353
PaeI	GCATGC	1 cut(s)	353
PasI	CCCWGGG	1 cut(s)	226
PkrI	GCNGC	1 cut(s)	250
PleI	GAGTC	2 cut(s)	433, 543
PpsI	GAGTC	2 cut(s)	433, 543
Ppu21I	YACGTR	1 cut(s)	529
PshBI	ATTAAT	1 cut(s)	237
Psp1406I	AACGTT	1 cut(s)	165
Psp6I	CCWGG	2 cut(s)	171, 225
PspGI	CCWGG	2 cut(s)	171, 225
PspPI	GGNCC	1 cut(s)	61
RsaI	GTAC	2 cut(s)	193, 294
RsaNI	GTAC	2 cut(s)	192, 293
RseI	CAYNNNNRTG	1 cut(s)	80
SaqAI	TTAA	5 cut(s)	17, 116, 168, 237, 276
SatI	GCNGC	1 cut(s)	249
Sau3AI	GATC	2 cut(s)	25, 296
Sau96I	GGNCC	1 cut(s)	61
SchI	GAGTC	2 cut(s)	433, 544
ScrFI	CCNGG	2 cut(s)	173, 227
SduI	GDGCHC	1 cut(s)	220
SinI	GGWCC	1 cut(s)	61
SmiI	ATTTAAAT	1 cut(s)	117
SmiMI	CAYNNNNRTG	1 cut(s)	80
SphI	GCATGC	1 cut(s)	353
Sse9I	AATT	2 cut(s)	18, 359
SsiI	CCGC	1 cut(s)	316
SspMI	CTAG	2 cut(s)	221, 270
StyD4I	CCNGG	2 cut(s)	171, 225
SwaI	ATTTAAAT	1 cut(s)	117
TaaI	ACNGT	1 cut(s)	196
TaiI	ACGT	3 cut(s)	168, 408, 531
TaqI	TCGA	1 cut(s)	553
TasI	AATT	2 cut(s)	18, 359
TatI	WGTACW	1 cut(s)	191
Tru1I	TTAA	5 cut(s)	17, 116, 168, 237, 276
Tru9I	TTAA	5 cut(s)	17, 116, 168, 237, 276
TscAI	CASTG	1 cut(s)	61
TseFI	GTSAC	1 cut(s)	536
TseI	GCWGC	1 cut(s)	248
Tsp45I	GTSAC	1 cut(s)	536
TspDTI	ATGAA	6 cut(s)	17, 135, 198, 222, 330, 515
TspRI	CASTG	1 cut(s)	61
VpaK11BI	GGWCC	1 cut(s)	61
VspI	ATTAAT	1 cut(s)	237
XagI	CCTNNNNNAGG	1 cut(s)	224
XceI	RCATGY	1 cut(s)	353
XcmI	CCANNNNNNNNNTGG	1 cut(s)	169
XspI	CTAG	2 cut(s)	221, 270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.