Rw0G000110
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00005
OG0005527
Physical Location & Seq
Reverse (-)
9039 .. 13132
4094 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G000110.1

Sequence Viewer

Length: 1155 bp
ATGAATGAGGTGGAGTTAATTGGTGATCAAAAAGAAAAGATTGACAAAAATATCAGTGAGGACCAAGCAGAAAACATATCGGTGGGTTCTTCCCAGAAATGCTCATGCTTTGATTTAAATGAAGAAGCCAGCGATAACAGCGACAATGATAACAGCGATAACAGCAATGCCAACGTTAACCTGCCTGATCATGAACTTAGTACAGTTAGAAATGATGAAAGAAGAGCCCTAGCCCAGGGAAACATTAATAGTAATGCAGCTACTATTAGTAATAGCTCTAGGGTTAAAGTAAGGCCATATGTACGATCCAAACTTCCTCGTCTGCGGTGGACACCCCAACTCCATCTTTCATTTTTGCATGCTTTGGAATTACTGGGAGGGCATGAGAGAGCAACTCCCAAGTTGGTTCTTCAGCTAATGAATGTGAGAGGACTAAGCATTTCCCACGTAAAGAGTCACTTGCAGATGTATCGAAGTAAGAAGCTTGATAGGGATGGTCAAGTATCTGATGAGAAAACTTACGACTACACGGATGGAAGAGAATCAAGGGATCACATACCTAACTTCGATTCGAGGTCAAGTTCTCTGACAAAGAAAGAAGTCGTACAAGGCAACAATTTGAACAAAGCTTTGCATCATACAAGCACTCCCATAAACCCTAGCCGATTACATGAGGAAAAGAGGTGGCCTCCATTTCAAAGCATTAGCAAAAGCTGGAGGGCCAGAAGATTTGCTTCCAACAATATCAATTGGTCAAATAGTCATAACGGCTCATCCCAATCTGATATAATGCATCACATGATTAGCAACAGACCAACAGATCATGATCTACGTTCTTGGAACCTTGAAGGTCATAGCAATTCAAGTAGCTACAAACAAGAATTCGAACCGCCATTTAGGGTTGAGTGGAACAAGGAAAAAATTTTGAAGTACAAGGAATGGATGCTTGATTTGGAGTTGGGTCTGCAAAGCCAAAGAGTTTGGAATGAGATCAATGACGAGACTCAGCATCATCAGACGATTAGTCACGCAGAAGGAAATTTTGAAACTGTGCAAGGAGTTATAGAGACTTCACAATATTACAAAGATCATCAATTCGAGGACATGAATAGCAAACAAGAAACAATTAGCACCAAGCTTTCCCTTTCTCTTTAA

Protein Analysis

384

Amino Acids

44.3

Weight (kDa)

6.35

Isoelectric Point (pI)

56.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 107 - 158 3.7e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 189
AciI CCGC 2 cut(s) 325, 890
AclI AACGTT 1 cut(s) 174
AclWI GGATC 2 cut(s) 300, 558
AcsI RAATTY 3 cut(s) 881, 921, 1039
AcuI CTGAAG 1 cut(s) 395
AfaI GTAC 4 cut(s) 202, 303, 606, 932
AfiI CCNNNNNNNGG 1 cut(s) 235
AgsI TTSAA 6 cut(s) 622, 698, 848, 864, 928, 1046
AhdI GACNNNNNGTC 1 cut(s) 1023
AjnI CCWGG 1 cut(s) 234
AluBI AGCT 8 cut(s) 260, 276, 415, 484, 629, 714, 870, 1138
AluI AGCT 8 cut(s) 260, 276, 415, 484, 629, 714, 870, 1138
Alw26I GTCTC 2 cut(s) 995, 1061
AlwI GGATC 2 cut(s) 300, 558
AoxI GGCC 3 cut(s) 293, 686, 720
ApeKI GCWGC 1 cut(s) 257
ApoI RAATTY 3 cut(s) 881, 921, 1039
AseI ATTAAT 1 cut(s) 246
AspS9I GGNCC 2 cut(s) 61, 720
AsuHPI GGTGA 1 cut(s) 35
AsuII TTCGAA 1 cut(s) 885
AvaII GGWCC 1 cut(s) 61
BanII GRGCYC 1 cut(s) 229
BbvI GCAGC 1 cut(s) 269
BccI CCATC 3 cut(s) 351, 488, 527
BceAI ACGGC 1 cut(s) 784
BcgI CGANNNNNNTGC 2 cut(s) 452, 486
BciT130I CCWGG 1 cut(s) 236
BclI TGATCA 2 cut(s) 25, 187
BcoDI GTCTC 2 cut(s) 995, 1061
BfaI CTAG 3 cut(s) 230, 279, 660
BfuAI ACCTGC 1 cut(s) 189
BisI GCNGC 1 cut(s) 258
BlsI GCNGC 1 cut(s) 259
Bme1390I CCNGG 1 cut(s) 236
Bme18I GGWCC 1 cut(s) 61
BmeRI GACNNNNNGTC 1 cut(s) 1023
BmgT120I GGNCC 2 cut(s) 61, 720
BmiI GGNNCC 1 cut(s) 842
BmrFI CCNGG 1 cut(s) 236
BmrI ACTGGG 1 cut(s) 383
BmsI GCATC 4 cut(s) 643, 802, 933, 1018
BmuI ACTGGG 1 cut(s) 383
BplI GAGNNNNNCTC 4 cut(s) 379, 411, 673, 705
BpmI CTGGAG 1 cut(s) 736
Bpu14I TTCGAA 1 cut(s) 885
BsaAI YACGTR 1 cut(s) 448
BsaBI GATNNNNATC 1 cut(s) 825
BsaJI CCNNGG 2 cut(s) 234, 235
BsaXI ACNNNNNCTCC 4 cut(s) 324, 354, 631, 661
Bsc4I CCNNNNNNNGG 1 cut(s) 235
Bse1I ACTGG 1 cut(s) 378
Bse3DI GCAATG 1 cut(s) 172
Bse8I GATNNNNATC 1 cut(s) 825
BseBI CCWGG 1 cut(s) 236
BseDI CCNNGG 2 cut(s) 234, 235
BseGI GGATG 4 cut(s) 499, 538, 773, 948
BseJI GATNNNNATC 1 cut(s) 825
BseLI CCNNNNNNNGG 1 cut(s) 235
BseMI GCAATG 1 cut(s) 172
BseMII CTCAG 1 cut(s) 1019
BseNI ACTGG 1 cut(s) 378
BseXI GCAGC 1 cut(s) 269
BshFI GGCC 3 cut(s) 295, 688, 722
BslI CCNNNNNNNGG 1 cut(s) 235
BsmAI GTCTC 2 cut(s) 995, 1061
BsnI GGCC 3 cut(s) 295, 688, 722
Bsp119I TTCGAA 1 cut(s) 885
Bsp1286I GDGCHC 1 cut(s) 229
Bsp143I GATC 8 cut(s) 25, 187, 305, 550, 820, 826, 990, 1087
BspACI CCGC 2 cut(s) 325, 890
BspANI GGCC 3 cut(s) 295, 688, 722
BspCNI CTCAG 1 cut(s) 1018
BspHI TCATGA 2 cut(s) 190, 823
BspLI GGNNCC 1 cut(s) 842
BspMI ACCTGC 1 cut(s) 189
BspPI GGATC 2 cut(s) 300, 558
BspQI GCTCTTC 1 cut(s) 217
BspT104I TTCGAA 1 cut(s) 885
BsrDI GCAATG 1 cut(s) 172
BsrI ACTGG 1 cut(s) 378
BssECI CCNNGG 2 cut(s) 234, 235
BssMI GATC 8 cut(s) 25, 187, 305, 550, 820, 826, 990, 1087
Bst2UI CCWGG 1 cut(s) 236
Bst4CI ACNGT 2 cut(s) 205, 1051
Bst6I CTCTTC 2 cut(s) 217, 532
BstBAI YACGTR 1 cut(s) 448
BstBI TTCGAA 1 cut(s) 885
BstC8I GCNNGC 2 cut(s) 130, 360
BstDEI CTNAG 3 cut(s) 197, 434, 1005
BstENI CCTNNNNNAGG 1 cut(s) 233
BstF5I GGATG 4 cut(s) 499, 538, 773, 948
BstKTI GATC 8 cut(s) 28, 190, 308, 553, 823, 829, 993, 1090
BstMAI GTCTC 2 cut(s) 995, 1061
BstMBI GATC 8 cut(s) 25, 187, 305, 550, 820, 826, 990, 1087
BstMWI GCNNNNNNNGC 2 cut(s) 138, 162
BstNI CCWGG 1 cut(s) 236
BstNSI RCATGY 1 cut(s) 362
BstSCI CCNGG 1 cut(s) 234
BstV1I GCAGC 1 cut(s) 269
BsuRI GGCC 3 cut(s) 295, 688, 722
BtsCI GGATG 4 cut(s) 499, 538, 773, 948
BtsIMutI CAGTG 1 cut(s) 61
BveI ACCTGC 1 cut(s) 189
Cac8I GCNNGC 2 cut(s) 130, 360
CciI TCATGA 2 cut(s) 190, 823
Cfr13I GGNCC 2 cut(s) 61, 720
Csp6I GTAC 4 cut(s) 201, 302, 605, 931
CviAII CATG 8 cut(s) 105, 191, 359, 383, 671, 799, 824, 1105
CviQI GTAC 4 cut(s) 201, 302, 605, 931
DdeI CTNAG 3 cut(s) 197, 434, 1005
DpnI GATC 8 cut(s) 27, 189, 307, 552, 822, 828, 992, 1089
DpnII GATC 8 cut(s) 25, 187, 305, 550, 820, 826, 990, 1087
DraI TTTAAA 1 cut(s) 117
DriI GACNNNNNGTC 1 cut(s) 1023
Eam1104I CTCTTC 2 cut(s) 217, 532
Eam1105I GACNNNNNGTC 1 cut(s) 1023
EarI CTCTTC 2 cut(s) 217, 532
Eco24I GRGCYC 1 cut(s) 229
Eco47I GGWCC 1 cut(s) 61
Eco57I CTGAAG 1 cut(s) 395
EcoNI CCTNNNNNAGG 1 cut(s) 233
EcoRI GAATTC 1 cut(s) 881
EcoRII CCWGG 1 cut(s) 234
EcoT22I ATGCAT 1 cut(s) 795
EcoT38I GRGCYC 1 cut(s) 229
FaeI CATG 8 cut(s) 108, 194, 362, 386, 674, 802, 827, 1108
FalI AAGNNNNNCTT 4 cut(s) 443, 475, 718, 750
FatI CATG 8 cut(s) 104, 190, 358, 382, 670, 798, 823, 1104
FauNDI CATATG 1 cut(s) 298
FbaI TGATCA 2 cut(s) 25, 187
Fnu4HI GCNGC 1 cut(s) 258
FokI GGATG 4 cut(s) 506, 545, 760, 955
FriOI GRGCYC 1 cut(s) 229
Fsp4HI GCNGC 1 cut(s) 258
FspBI CTAG 3 cut(s) 230, 279, 660
GluI GCNGC 1 cut(s) 258
GsuI CTGGAG 1 cut(s) 736
HaeIII GGCC 3 cut(s) 295, 688, 722
Hin1II CATG 8 cut(s) 108, 194, 362, 386, 674, 802, 827, 1108
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HindIII AAGCTT 3 cut(s) 482, 627, 1136
HinfI GANTC 4 cut(s) 454, 542, 569, 1003
HpaI GTTAAC 1 cut(s) 178
HphI GGTGA 1 cut(s) 35
Hpy166II GTNNAC 2 cut(s) 178, 330
Hpy188I TCNGA 4 cut(s) 508, 588, 784, 1017
Hpy188III TCNNGA 2 cut(s) 191, 824
Hpy8I GTNNAC 2 cut(s) 178, 330
HpyAV CCTTC 2 cut(s) 842, 1028
HpyCH4III ACNGT 2 cut(s) 205, 1051
HpyCH4IV ACGT 3 cut(s) 174, 447, 832
HpyCH4V TGCA 7 cut(s) 257, 358, 463, 634, 793, 967, 1054
HpyF10VI GCNNNNNNNGC 2 cut(s) 138, 162
HpyF3I CTNAG 3 cut(s) 197, 434, 1005
HpySE526I ACGT 3 cut(s) 174, 447, 832
Hsp92II CATG 8 cut(s) 108, 194, 362, 386, 674, 802, 827, 1108
Ksp22I TGATCA 2 cut(s) 25, 187
KspAI GTTAAC 1 cut(s) 178
Kzo9I GATC 8 cut(s) 25, 187, 305, 550, 820, 826, 990, 1087
LguI GCTCTTC 1 cut(s) 217
LpnPI CCDG 9 cut(s) 107, 142, 194, 198, 221, 248, 359, 700, 736
Lsp1109I GCAGC 1 cut(s) 269
LweI GCATC 4 cut(s) 643, 802, 933, 1018
MaeI CTAG 3 cut(s) 230, 279, 660
MaeII ACGT 3 cut(s) 174, 447, 832
MaeIII GTNAC 2 cut(s) 455, 1025
MalI GATC 8 cut(s) 27, 189, 307, 552, 822, 828, 992, 1089
MboI GATC 8 cut(s) 25, 187, 305, 550, 820, 826, 990, 1087
MboII GAAGA 6 cut(s) 81, 134, 234, 401, 549, 738
MfeI CAATTG 1 cut(s) 748
MhlI GDGCHC 1 cut(s) 229
MlyI GAGTC 2 cut(s) 463, 997
MmeI TCCRAC 1 cut(s) 762
Mph1103I ATGCAT 1 cut(s) 795
MseI TTAA 6 cut(s) 17, 116, 177, 246, 285, 1153
MslI CAYNNNNRTG 1 cut(s) 80
MspR9I CCNGG 1 cut(s) 236
MunI CAATTG 1 cut(s) 748
MvaI CCWGG 1 cut(s) 236
MwoI GCNNNNNNNGC 2 cut(s) 138, 162
NdeI CATATG 1 cut(s) 298
NdeII GATC 8 cut(s) 25, 187, 305, 550, 820, 826, 990, 1087
NlaIII CATG 8 cut(s) 108, 194, 362, 386, 674, 802, 827, 1108
NlaIV GGNNCC 1 cut(s) 842
NmuCI GTSAC 2 cut(s) 455, 1025
NsiI ATGCAT 1 cut(s) 795
NspI RCATGY 1 cut(s) 362
NspV TTCGAA 1 cut(s) 885
PaeI GCATGC 1 cut(s) 362
PagI TCATGA 2 cut(s) 190, 823
PasI CCCWGGG 1 cut(s) 235
PciSI GCTCTTC 1 cut(s) 217
PfeI GAWTC 2 cut(s) 542, 569
PkrI GCNGC 1 cut(s) 259
PleI GAGTC 2 cut(s) 462, 997
PpsI GAGTC 2 cut(s) 462, 997
Ppu21I YACGTR 1 cut(s) 448
PshBI ATTAAT 1 cut(s) 246
Psp1406I AACGTT 1 cut(s) 174
Psp6I CCWGG 1 cut(s) 234
PspGI CCWGG 1 cut(s) 234
PspN4I GGNNCC 1 cut(s) 842
PspPI GGNCC 2 cut(s) 61, 720
RsaI GTAC 4 cut(s) 202, 303, 606, 932
RsaNI GTAC 4 cut(s) 201, 302, 605, 931
RseI CAYNNNNRTG 1 cut(s) 80
SapI GCTCTTC 1 cut(s) 217
SaqAI TTAA 6 cut(s) 17, 116, 177, 246, 285, 1153
SatI GCNGC 1 cut(s) 258
Sau3AI GATC 8 cut(s) 25, 187, 305, 550, 820, 826, 990, 1087
Sau96I GGNCC 2 cut(s) 61, 720
SchI GAGTC 2 cut(s) 463, 997
ScrFI CCNGG 1 cut(s) 236
SduI GDGCHC 1 cut(s) 229
SfaNI GCATC 4 cut(s) 643, 802, 933, 1018
SfuI TTCGAA 1 cut(s) 885
SinI GGWCC 1 cut(s) 61
SmiI ATTTAAAT 1 cut(s) 117
SmiMI CAYNNNNRTG 1 cut(s) 80
SphI GCATGC 1 cut(s) 362
SsiI CCGC 2 cut(s) 325, 890
SspI AATATT 1 cut(s) 1079
SspMI CTAG 3 cut(s) 230, 279, 660
StyD4I CCNGG 1 cut(s) 234
SwaI ATTTAAAT 1 cut(s) 117
TaaI ACNGT 2 cut(s) 205, 1051
TaiI ACGT 3 cut(s) 177, 450, 835
TaqI TCGA 5 cut(s) 472, 567, 572, 885, 1098
TatI WGTACW 2 cut(s) 200, 930
TfiI GAWTC 2 cut(s) 542, 569
Tru1I TTAA 6 cut(s) 17, 116, 177, 246, 285, 1153
Tru9I TTAA 6 cut(s) 17, 116, 177, 246, 285, 1153
TscAI CASTG 1 cut(s) 61
TseFI GTSAC 2 cut(s) 455, 1025
TseI GCWGC 1 cut(s) 257
Tsp45I GTSAC 2 cut(s) 455, 1025
TspDTI ATGAA 7 cut(s) 17, 135, 207, 231, 339, 434, 1121
TspGWI ACGGA 1 cut(s) 545
TspRI CASTG 1 cut(s) 61
VpaK11BI GGWCC 1 cut(s) 61
VspI ATTAAT 1 cut(s) 246
XagI CCTNNNNNAGG 1 cut(s) 233
XapI RAATTY 3 cut(s) 881, 921, 1039
XceI RCATGY 1 cut(s) 362
XspI CTAG 3 cut(s) 230, 279, 660
Zsp2I ATGCAT 1 cut(s) 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.