Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0005527

Physical Location & Seq

Genomic Coordinates Forward (+)

28634737 .. 28636904

Gene Structure 2168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g27750.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGATGAGCTAGAATTTGGTGATCAGGAAGCTGAGAAGAGTAACGAGATCAGCGAGGAACAAGTAGAAAACGGATCAGTGGGATCATCCCAGAAATGCTCATCCTTCGATTTGAATGAAGAAGCAAGTAGTGACAGTGAAGAAAGAGGCAAAGGGAATAATGCTGCATATAATGATAGTGAGGGAAATGAAAGGCGGAGGGTTAAAGTAAGGCAATATGTGAGATCAAAAATGCCTCGTCTACGGTGGACTCCTCAACTCCATCTTTCTTTTGTGCATGCTGTTGAACGACTGGGTGGCCAAGATAGAGCAACTCCCAAGTTAATTCTTCAGCTAATGAATGTGAGAGGACTTAGCATTTCTCATGTAAAGAGTCACTTGCAGATGTATAGAAGTAAGAAGCTTGACGGGAATGGCCAAGTATTATCTGAAAAACACGAATCCAAGCGCGGAAGGGATAACATATCTTGCATGGTGCACCAAACAATCAACCAGCCTTGTCGACATGTATACTTTGGAATGGACAACGGTGGCATTGTTGTAACAACAAATCCACACGACTGTCAGAGCCAACCACAGCCAGATTTTAAAGCTGTCTCAAGGTCAAGTTCTCTACTAAACAAAGAACTTGTACATGGCAACAACTCCAACAATTCTACGGGTAAAATCTTGCAAACTGTACCAATAAACCCTAGCCGGTTTCTGGAGGACAAGAGGTGGCCTCCATCAGAAACGATTAACCAACAACAATGGAGGGCTAAAAGAATACCTGCTGCCAAAATCAGTTGGTCAGATGATTGTAATGGCTCCCAATCTGACCATCTAATGCATCATATGCACACCACACCGAGGTTGATAAGGGAATCCCACAATATAAGGCCACCAAACTGGAACCTTGGAGAGAGCAGAAACACAAGGCAGTTTCCATCAAACTCACACAATTCTATCACCAATTCCAGTTGCTACAAAACTGAATTCGAGCCGCCATTTGGGTTTGAGTTAAATGAAGAAAAAATATCGAAGTACAAAGAGTGGATGCCACAACTGGAGTTGGGTCTGAGTCAAAGTGTTGAGAATTATGAGGAAAAGAAGATTATTTCCAGACATCGTATGGTTGGTGAAGAACTTTATGGAACTGGGCAAAGAGTTAAACAGGAAATTAGCACTAAACTTTCTCTTTCTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

396

Amino Acids

45.19

Weight (kDa)

8.42

Isoelectric Point (pI)

62.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005527)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g07670 FvH4_3g07670 FvH4_3g07670
malus_domestica	MD05G1299300.v1.1 MD10G1278800.v1.1
prunus_persica	Prupe.4G062400_v2.0.a1 Prupe.4G062400_v2.0.a1 Prupe.4G062400_v2.0.a1 Prupe.4G062400_v2.0.a1 Prupe.4G062400_v2.0.a1 Prupe.4G062400_v2.0.a1 Prupe.4G062400_v2.0.a1
pyrus_communis	pycom05g27750 pycom10g23280
rosa_chinensis	RchiOBHm_Chr5g0011011
rosa_laevigata	RLG00000031802
rosa_multiflora	Rmu_sc0003242.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065390
rosa_rugosa	Rorug04G0454300 Rorug04G0454400 Rorug04G0454500 Rorug04G0454500 Rorug04G0454500
rosa_samantha	Rh5AG086700 Rh5BG081300 Rh5CG094100 Rh5DG081200
rosa_wichuraiana	Rw0G000110 Rw0G017840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	778
AccI	GTMKAC	3 cut(s)	241, 502, 510
AccII	CGCG	1 cut(s)	450
AciI	CCGC	3 cut(s)	196, 450, 983
AclWI	GGATC	2 cut(s)	82, 91
AcoI	YGGCCR	2 cut(s)	298, 415
AcsI	RAATTY	2 cut(s)	14, 974
AcuI	CTGAAG	1 cut(s)	314
AfaI	GTAC	3 cut(s)	633, 681, 1025
AfiI	CCNNNNNNNGG	3 cut(s)	703, 849, 989
AflIII	ACRYGT	1 cut(s)	505
AgsI	TTSAA	2 cut(s)	115, 287
AluBI	AGCT	5 cut(s)	10, 32, 334, 403, 593
AluI	AGCT	5 cut(s)	10, 32, 334, 403, 593
Alw21I	GWGCWC	1 cut(s)	480
Alw26I	GTCTC	1 cut(s)	601
Alw44I	GTGCAC	1 cut(s)	476
AlwI	GGATC	2 cut(s)	82, 91
AoxI	GGCC	4 cut(s)	298, 415, 719, 878
ApaLI	GTGCAC	1 cut(s)	476
ApeKI	GCWGC	2 cut(s)	164, 773
ApoI	RAATTY	2 cut(s)	14, 974
AspLEI	GCGC	1 cut(s)	450
AsuHPI	GGTGA	3 cut(s)	32, 940, 1130
BaeGI	GKGCMC	1 cut(s)	480
BalI	TGGCCA	2 cut(s)	300, 417
Bbv12I	GWGCWC	1 cut(s)	480
BbvI	GCAGC	2 cut(s)	151, 760
BccI	CCATC	4 cut(s)	270, 733, 828, 934
BclI	TGATCA	1 cut(s)	22
BcoDI	GTCTC	1 cut(s)	601
BfaI	CTAG	2 cut(s)	11, 693
BfuAI	ACCTGC	1 cut(s)	778
BisI	GCNGC	3 cut(s)	165, 774, 983
BlsI	GCNGC	3 cut(s)	166, 775, 984
BmiI	GGNNCC	2 cut(s)	808, 893
BmrI	ACTGGG	2 cut(s)	302, 1146
BmsI	GCATC	2 cut(s)	838, 1026
BmuI	ACTGGG	2 cut(s)	302, 1146
BplI	GAGNNNNNCTC	2 cut(s)	706, 738
BpmI	CTGGAG	2 cut(s)	725, 1067
BpuEI	CTTGAG	1 cut(s)	583
BsaJI	CCNNGG	2 cut(s)	848, 895
Bsc4I	CCNNNNNNNGG	3 cut(s)	703, 849, 989
Bse118I	RCCGGY	1 cut(s)	696
Bse1I	ACTGG	5 cut(s)	297, 893, 957, 1050, 1141
BseDI	CCNNGG	2 cut(s)	848, 895
BseGI	GGATG	4 cut(s)	10, 86, 101, 1041
BseLI	CCNNNNNNNGG	3 cut(s)	703, 849, 989
BseMII	CTCAG	2 cut(s)	24, 1049
BseNI	ACTGG	5 cut(s)	297, 893, 957, 1050, 1141
BseRI	GAGGAG	1 cut(s)	243
BseSI	GKGCMC	1 cut(s)	480
BseXI	GCAGC	2 cut(s)	151, 760
Bsh1236I	CGCG	1 cut(s)	450
BshFI	GGCC	4 cut(s)	300, 417, 721, 880
BsiHKAI	GWGCWC	1 cut(s)	480
BsiSI	CCGG	1 cut(s)	697
BslI	CCNNNNNNNGG	3 cut(s)	703, 849, 989
BsmAI	GTCTC	1 cut(s)	601
BsnI	GGCC	4 cut(s)	300, 417, 721, 880
Bsp1286I	GDGCHC	1 cut(s)	480
Bsp1407I	TGTACA	1 cut(s)	631
Bsp143I	GATC	5 cut(s)	22, 48, 74, 83, 224
BspACI	CCGC	3 cut(s)	196, 450, 983
BspANI	GGCC	4 cut(s)	300, 417, 721, 880
BspCNI	CTCAG	2 cut(s)	25, 1050
BspFNI	CGCG	1 cut(s)	450
BspLI	GGNNCC	2 cut(s)	808, 893
BspMI	ACCTGC	1 cut(s)	778
BspPI	GGATC	2 cut(s)	82, 91
BsrFI	RCCGGY	1 cut(s)	696
BsrGI	TGTACA	1 cut(s)	631
BsrI	ACTGG	5 cut(s)	297, 893, 957, 1050, 1141
BssAI	RCCGGY	1 cut(s)	696
BssECI	CCNNGG	2 cut(s)	848, 895
BssMI	GATC	5 cut(s)	22, 48, 74, 83, 224
BssNAI	GTATAC	1 cut(s)	511
BssT1I	CCWWGG	1 cut(s)	895
Bst1107I	GTATAC	1 cut(s)	511
Bst4CI	ACNGT	5 cut(s)	137, 246, 530, 563, 679
Bst6I	CTCTTC	1 cut(s)	32
BstAPI	GCANNNNNTGC	1 cut(s)	835
BstAUI	TGTACA	1 cut(s)	631
BstC8I	GCNNGC	1 cut(s)	279
BstDEI	CTNAG	3 cut(s)	33, 353, 1058
BstF5I	GGATG	4 cut(s)	10, 86, 101, 1041
BstFNI	CGCG	1 cut(s)	450
BstHHI	GCGC	1 cut(s)	450
BstKTI	GATC	5 cut(s)	25, 51, 77, 86, 227
BstMAI	GTCTC	1 cut(s)	601
BstMBI	GATC	5 cut(s)	22, 48, 74, 83, 224
BstMWI	GCNNNNNNNGC	1 cut(s)	835
BstNSI	RCATGY	2 cut(s)	281, 509
BstSLI	GKGCMC	1 cut(s)	480
BstUI	CGCG	1 cut(s)	450
BstV1I	GCAGC	2 cut(s)	151, 760
BstXI	CCANNNNNNTGG	1 cut(s)	888
BstZ17I	GTATAC	1 cut(s)	511
BsuRI	GGCC	4 cut(s)	300, 417, 721, 880
BtsCI	GGATG	4 cut(s)	10, 86, 101, 1041
BtsIMutI	CAGTG	2 cut(s)	84, 142
BveI	ACCTGC	1 cut(s)	778
Cac8I	GCNNGC	1 cut(s)	279
CfoI	GCGC	1 cut(s)	450
Cfr10I	RCCGGY	1 cut(s)	696
Csp6I	GTAC	3 cut(s)	632, 680, 1024
CviAII	CATG	5 cut(s)	278, 365, 472, 506, 635
CviQI	GTAC	3 cut(s)	632, 680, 1024
DdeI	CTNAG	3 cut(s)	33, 353, 1058
DpnI	GATC	5 cut(s)	24, 50, 76, 85, 226
DpnII	GATC	5 cut(s)	22, 48, 74, 83, 224
DraI	TTTAAA	1 cut(s)	589
EaeI	YGGCCR	2 cut(s)	298, 415
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
EciI	GGCGGA	1 cut(s)	211
Eco130I	CCWWGG	1 cut(s)	895
Eco57I	CTGAAG	1 cut(s)	314
EcoRI	GAATTC	1 cut(s)	974
EcoT14I	CCWWGG	1 cut(s)	895
EcoT22I	ATGCAT	1 cut(s)	831
ErhI	CCWWGG	1 cut(s)	895
FaeI	CATG	5 cut(s)	281, 368, 475, 509, 638
FalI	AAGNNNNNCTT	2 cut(s)	362, 394
FatI	CATG	5 cut(s)	277, 364, 471, 505, 634
FauNDI	CATATG	1 cut(s)	834
FbaI	TGATCA	1 cut(s)	22
FblI	GTMKAC	3 cut(s)	241, 502, 510
Fnu4HI	GCNGC	3 cut(s)	165, 774, 983
FokI	GGATG	4 cut(s)	17, 73, 88, 1048
Fsp4HI	GCNGC	3 cut(s)	165, 774, 983
FspBI	CTAG	2 cut(s)	11, 693
GlaI	GCGC	1 cut(s)	449
GluI	GCNGC	3 cut(s)	165, 774, 983
GsuI	CTGGAG	2 cut(s)	725, 1067
HaeIII	GGCC	4 cut(s)	300, 417, 721, 880
HapII	CCGG	1 cut(s)	697
HhaI	GCGC	1 cut(s)	450
Hin1II	CATG	5 cut(s)	281, 368, 475, 509, 638
Hin6I	GCGC	1 cut(s)	448
HinP1I	GCGC	1 cut(s)	448
HincII	GTYRAC	1 cut(s)	503
HindII	GTYRAC	1 cut(s)	503
HindIII	AAGCTT	1 cut(s)	401
HinfI	GANTC	5 cut(s)	250, 373, 440, 863, 1060
HpaII	CCGG	1 cut(s)	697
HphI	GGTGA	3 cut(s)	32, 940, 1130
Hpy166II	GTNNAC	5 cut(s)	242, 249, 478, 503, 511
Hpy188I	TCNGA	6 cut(s)	430, 567, 730, 793, 817, 1059
Hpy188III	TCNNGA	3 cut(s)	26, 704, 1101
Hpy8I	GTNNAC	5 cut(s)	242, 249, 478, 503, 511
HpyAV	CCTTC	2 cut(s)	115, 447
HpyCH4III	ACNGT	5 cut(s)	137, 246, 530, 563, 679
HpyCH4V	TGCA	8 cut(s)	167, 277, 382, 471, 478, 673, 829, 838
HpyF10VI	GCNNNNNNNGC	1 cut(s)	835
HpyF3I	CTNAG	3 cut(s)	33, 353, 1058
Hsp92II	CATG	5 cut(s)	281, 368, 475, 509, 638
HspAI	GCGC	1 cut(s)	448
Ksp22I	TGATCA	1 cut(s)	22
Kzo9I	GATC	5 cut(s)	22, 48, 74, 83, 224
LmnI	GCTCC	1 cut(s)	812
Lsp1109I	GCAGC	2 cut(s)	151, 760
LweI	GCATC	2 cut(s)	838, 1026
MaeI	CTAG	2 cut(s)	11, 693
MaeIII	GTNAC	4 cut(s)	41, 131, 374, 541
MalI	GATC	5 cut(s)	24, 50, 76, 85, 226
MboI	GATC	5 cut(s)	22, 48, 74, 83, 224
MboII	GAAGA	7 cut(s)	49, 131, 152, 320, 1019, 1102, 1133
MhlI	GDGCHC	1 cut(s)	480
MlsI	TGGCCA	2 cut(s)	300, 417
MluCI	AATT	8 cut(s)	14, 324, 652, 940, 952, 974, 1075, 1158
MluNI	TGGCCA	2 cut(s)	300, 417
MlyI	GAGTC	3 cut(s)	244, 382, 1069
MmeI	TCCRAC	1 cut(s)	672
Mox20I	TGGCCA	2 cut(s)	300, 417
Mph1103I	ATGCAT	1 cut(s)	831
MscI	TGGCCA	2 cut(s)	300, 417
MseI	TTAA	7 cut(s)	204, 323, 588, 738, 1001, 1149, 1186
Msp20I	TGGCCA	2 cut(s)	300, 417
MspI	CCGG	1 cut(s)	697
MvnI	CGCG	1 cut(s)	450
MwoI	GCNNNNNNNGC	1 cut(s)	835
NdeI	CATATG	1 cut(s)	834
NdeII	GATC	5 cut(s)	22, 48, 74, 83, 224
NlaIII	CATG	5 cut(s)	281, 368, 475, 509, 638
NlaIV	GGNNCC	2 cut(s)	808, 893
NmuCI	GTSAC	2 cut(s)	131, 374
NsiI	ATGCAT	1 cut(s)	831
NspI	RCATGY	2 cut(s)	281, 509
PaeI	GCATGC	1 cut(s)	281
PciI	ACATGT	1 cut(s)	505
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PfeI	GAWTC	2 cut(s)	440, 863
PkrI	GCNGC	3 cut(s)	166, 775, 984
PleI	GAGTC	3 cut(s)	244, 381, 1068
PpsI	GAGTC	3 cut(s)	244, 381, 1068
PscI	ACATGT	1 cut(s)	505
PspN4I	GGNNCC	2 cut(s)	808, 893
RsaI	GTAC	3 cut(s)	633, 681, 1025
RsaNI	GTAC	3 cut(s)	632, 680, 1024
SalI	GTCGAC	1 cut(s)	501
SaqAI	TTAA	7 cut(s)	204, 323, 588, 738, 1001, 1149, 1186
SatI	GCNGC	3 cut(s)	165, 774, 983
Sau3AI	GATC	5 cut(s)	22, 48, 74, 83, 224
SchI	GAGTC	3 cut(s)	244, 382, 1069
SduI	GDGCHC	1 cut(s)	480
SfaNI	GCATC	2 cut(s)	838, 1026
SmlI	CTYRAG	1 cut(s)	598
SmoI	CTYRAG	1 cut(s)	598
SphI	GCATGC	1 cut(s)	281
Sse9I	AATT	8 cut(s)	14, 324, 652, 940, 952, 974, 1075, 1158
SsiI	CCGC	3 cut(s)	196, 450, 983
SspMI	CTAG	2 cut(s)	11, 693
StyI	CCWWGG	1 cut(s)	895
TaaI	ACNGT	5 cut(s)	137, 246, 530, 563, 679
TaqI	TCGA	4 cut(s)	108, 502, 978, 1019
TasI	AATT	8 cut(s)	14, 324, 652, 940, 952, 974, 1075, 1158
TatI	WGTACW	2 cut(s)	631, 1023
TauI	GCSGC	1 cut(s)	985
TfiI	GAWTC	2 cut(s)	440, 863
Tru1I	TTAA	7 cut(s)	204, 323, 588, 738, 1001, 1149, 1186
Tru9I	TTAA	7 cut(s)	204, 323, 588, 738, 1001, 1149, 1186
TscAI	CASTG	2 cut(s)	84, 142
TseFI	GTSAC	2 cut(s)	131, 374
TseI	GCWGC	2 cut(s)	164, 773
Tsp45I	GTSAC	2 cut(s)	131, 374
TspDTI	ATGAA	4 cut(s)	132, 204, 353, 1020
TspGWI	ACGGA	1 cut(s)	87
TspRI	CASTG	2 cut(s)	84, 142
VneI	GTGCAC	1 cut(s)	476
XapI	RAATTY	2 cut(s)	14, 974
XceI	RCATGY	2 cut(s)	281, 509
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1108
XmiI	GTMKAC	3 cut(s)	241, 502, 510
XspI	CTAG	2 cut(s)	11, 693
Zsp2I	ATGCAT	1 cut(s)	831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.