Protein of unknown function (DUF688)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G29240 AT2G34170 AT2G34170 AT2G34170 AT2G34170 AT2G34170 AT2G34170 |
| fragaria_vesca | FvH4_3g07680 |
| malus_domestica | MD05G1299600.v1.1 MD10G1278900.v1.1 |
| prunus_persica | Prupe.4G062300_v2.0.a1 Prupe.4G062300_v2.0.a1 |
| pyrus_communis | pycom05g27780 pycom10g23290 |
| rosa_chinensis | RchiOBHm_Chr5g0010991 |
| rosa_laevigata | RLG00000031801 |
| rosa_multiflora | Rmu_sc0008268.1_g000004 |
| rosa_roxburghii | Rroxscaffold_1G00065400 |
| rosa_rugosa | Rorug04G0454200 Rorug04G0454300 |
| rosa_samantha | Rh5AG086500 Rh5BG081200 Rh5CG093900 Rh5DG081100 |
| rosa_wichuraiana | Rw0G017410 Rw0G017860 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 953, 1026, 2357 |
| AarI | CACCTGC | 1 cut(s) | 1703 |
| AatII | GACGTC | 1 cut(s) | 257 |
| Acc36I | ACCTGC | 4 cut(s) | 148, 622, 1593, 1703 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1835 |
| AccI | GTMKAC | 3 cut(s) | 1951, 2067, 2450 |
| AccII | CGCG | 1 cut(s) | 2473 |
| AclWI | GGATC | 3 cut(s) | 330, 809, 2360 |
| AcsI | RAATTY | 4 cut(s) | 19, 874, 1919, 2035 |
| AcuI | CTGAAG | 4 cut(s) | 1301, 1444, 1600, 1756 |
| AcyI | GRCGYC | 1 cut(s) | 254 |
| AdeI | CACNNNGTG | 8 cut(s) | 1163, 1319, 1475, 1511, 1631, 1667, 1787, 2538 |
| AfaI | GTAC | 3 cut(s) | 1391, 2128, 2394 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 208, 902, 945, 1835, 1841 |
| AflII | CTTAAG | 2 cut(s) | 868, 889 |
| AflIII | ACRYGT | 2 cut(s) | 1265, 2245 |
| AgsI | TTSAA | 9 cut(s) | 19, 25, 394, 505, 1894, 2034, 2040, 2322, 2463 |
| AjiI | CACGTC | 1 cut(s) | 1412 |
| AjnI | CCWGG | 5 cut(s) | 202, 277, 901, 1834, 2368 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1874, 1906, 2413, 2445 |
| AleI | CACNNNNGTG | 1 cut(s) | 67 |
| AluBI | AGCT | 4 cut(s) | 1370, 1384, 2284, 2316 |
| AluI | AGCT | 4 cut(s) | 1370, 1384, 2284, 2316 |
| Alw21I | GWGCWC | 3 cut(s) | 74, 198, 401 |
| Alw44I | GTGCAC | 1 cut(s) | 70 |
| AlwI | GGATC | 3 cut(s) | 330, 809, 2360 |
| Ama87I | CYCGRG | 3 cut(s) | 243, 585, 921 |
| AoxI | GGCC | 5 cut(s) | 104, 426, 722, 1958, 2254 |
| ApaLI | GTGCAC | 1 cut(s) | 70 |
| ApeKI | GCWGC | 3 cut(s) | 617, 653, 1019 |
| ApoI | RAATTY | 4 cut(s) | 19, 874, 1919, 2035 |
| AspA2I | CCTAGG | 1 cut(s) | 266 |
| AspLEI | GCGC | 1 cut(s) | 2571 |
| AspS9I | GGNCC | 4 cut(s) | 105, 426, 918, 1958 |
| AsuC2I | CCSGG | 2 cut(s) | 922, 923 |
| AsuII | TTCGAA | 1 cut(s) | 371 |
| AvaI | CYCGRG | 3 cut(s) | 243, 585, 921 |
| AvaII | GGWCC | 1 cut(s) | 918 |
| AvrII | CCTAGG | 1 cut(s) | 266 |
| AxyI | CCTNAGG | 2 cut(s) | 1148, 1304 |
| BaeGI | GKGCMC | 1 cut(s) | 74 |
| BanII | GRGCYC | 2 cut(s) | 928, 1976 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1373, 1405 |
| BbsI | GAAGAC | 2 cut(s) | 927, 1994 |
| Bbv12I | GWGCWC | 3 cut(s) | 74, 198, 401 |
| BbvI | GCAGC | 3 cut(s) | 629, 640, 1006 |
| BccI | CCATC | 4 cut(s) | 71, 104, 379, 530 |
| BciT130I | CCWGG | 5 cut(s) | 204, 279, 903, 1836, 2370 |
| BciVI | GTATCC | 1 cut(s) | 1495 |
| BclI | TGATCA | 1 cut(s) | 2575 |
| BcnI | CCSGG | 2 cut(s) | 922, 923 |
| BfaI | CTAG | 4 cut(s) | 267, 558, 2144, 2285 |
| BfmI | CTRYAG | 6 cut(s) | 288, 486, 508, 615, 1376, 1648 |
| BfrI | CTTAAG | 2 cut(s) | 868, 889 |
| BfuAI | ACCTGC | 4 cut(s) | 148, 622, 1593, 1703 |
| BfuI | GTATCC | 1 cut(s) | 1495 |
| BisI | GCNGC | 3 cut(s) | 618, 654, 1020 |
| BlnI | CCTAGG | 1 cut(s) | 266 |
| BlsI | GCNGC | 3 cut(s) | 619, 655, 1021 |
| Bme1390I | CCNGG | 7 cut(s) | 204, 279, 903, 922, 923, 1836, 2370 |
| Bme18I | GGWCC | 1 cut(s) | 918 |
| BmeT110I | CYCGRG | 3 cut(s) | 243, 585, 921 |
| BmgBI | CACGTC | 1 cut(s) | 1412 |
| BmgT120I | GGNCC | 4 cut(s) | 105, 426, 918, 1958 |
| BmiI | GGNNCC | 2 cut(s) | 826, 920 |
| BmrFI | CCNGG | 7 cut(s) | 204, 279, 903, 922, 923, 1836, 2370 |
| BmrI | ACTGGG | 1 cut(s) | 199 |
| BmsI | GCATC | 4 cut(s) | 454, 1006, 1727, 2371 |
| BmuI | ACTGGG | 1 cut(s) | 199 |
| BoxI | GACNNNNGTC | 1 cut(s) | 257 |
| BpiI | GAAGAC | 2 cut(s) | 927, 1994 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 482, 514, 1126, 1158, 1282, 1314 |
| BpmI | CTGGAG | 4 cut(s) | 1221, 1377, 1605, 2311 |
| Bpu10I | CCTNAGC | 1 cut(s) | 213 |
| Bpu14I | TTCGAA | 1 cut(s) | 371 |
| BpuEI | CTTGAG | 2 cut(s) | 491, 1406 |
| BpuMI | CCSGG | 2 cut(s) | 922, 923 |
| BsaAI | YACGTR | 1 cut(s) | 2495 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2217 |
| BsaHI | GRCGYC | 1 cut(s) | 254 |
| BsaI | GGTCTC | 2 cut(s) | 750, 987 |
| BsaWI | WCCGGW | 1 cut(s) | 229 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 239, 269 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 208, 902, 945, 1835, 1841 |
| Bse21I | CCTNAGG | 2 cut(s) | 1148, 1304 |
| Bse3DI | GCAATG | 1 cut(s) | 633 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2217 |
| BseBI | CCWGG | 5 cut(s) | 204, 279, 903, 1836, 2370 |
| BseGI | GGATG | 8 cut(s) | 198, 448, 454, 469, 912, 1021, 1718, 2519 |
| BseJI | GATNNNNATC | 1 cut(s) | 2217 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 208, 902, 945, 1835, 1841 |
| BseMI | GCAATG | 1 cut(s) | 633 |
| BseRI | GAGGAG | 4 cut(s) | 263, 794, 931, 2391 |
| BseSI | GKGCMC | 1 cut(s) | 74 |
| BseXI | GCAGC | 3 cut(s) | 629, 640, 1006 |
| BsgI | GTGCAG | 1 cut(s) | 561 |
| Bsh1236I | CGCG | 1 cut(s) | 2473 |
| BshFI | GGCC | 5 cut(s) | 106, 428, 724, 1960, 2256 |
| BsiHKAI | GWGCWC | 3 cut(s) | 74, 198, 401 |
| BsiHKCI | CYCGRG | 3 cut(s) | 243, 585, 921 |
| BsiSI | CCGG | 2 cut(s) | 230, 922 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 208, 902, 945, 1835, 1841 |
| BsmBI | CGTCTC | 3 cut(s) | 40, 245, 467 |
| BsmI | GAATGC | 6 cut(s) | 31, 1153, 1309, 1735, 1777, 1854 |
| BsnI | GGCC | 5 cut(s) | 106, 428, 724, 1960, 2256 |
| Bso31I | GGTCTC | 2 cut(s) | 750, 987 |
| BsoBI | CYCGRG | 3 cut(s) | 243, 585, 921 |
| Bsp119I | TTCGAA | 1 cut(s) | 371 |
| Bsp1286I | GDGCHC | 5 cut(s) | 74, 198, 401, 928, 1976 |
| Bsp1407I | TGTACA | 1 cut(s) | 2392 |
| Bsp143I | GATC | 8 cut(s) | 322, 331, 814, 1120, 1276, 2365, 2423, 2575 |
| Bsp68I | TCGCGA | 1 cut(s) | 2473 |
| BspANI | GGCC | 5 cut(s) | 106, 428, 724, 1960, 2256 |
| BspFNI | CGCG | 1 cut(s) | 2473 |
| BspLI | GGNNCC | 2 cut(s) | 826, 920 |
| BspMAI | CTGCAG | 2 cut(s) | 619, 1380 |
| BspMI | ACCTGC | 4 cut(s) | 148, 622, 1593, 1703 |
| BspPI | GGATC | 3 cut(s) | 330, 809, 2360 |
| BspT104I | TTCGAA | 1 cut(s) | 371 |
| BspTI | CTTAAG | 2 cut(s) | 868, 889 |
| BspTNI | GGTCTC | 2 cut(s) | 750, 987 |
| BsrDI | GCAATG | 1 cut(s) | 633 |
| BsrGI | TGTACA | 1 cut(s) | 2392 |
| BssMI | GATC | 8 cut(s) | 322, 331, 814, 1120, 1276, 2365, 2423, 2575 |
| BssNAI | GTATAC | 1 cut(s) | 1952 |
| BssNI | GRCGYC | 1 cut(s) | 254 |
| BssT1I | CCWWGG | 4 cut(s) | 266, 429, 621, 2055 |
| Bst1107I | GTATAC | 1 cut(s) | 1952 |
| Bst2UI | CCWGG | 5 cut(s) | 204, 279, 903, 1836, 2370 |
| Bst4CI | ACNGT | 4 cut(s) | 509, 1995, 2008, 2397 |
| Bst6I | CTCTTC | 3 cut(s) | 129, 1860, 2409 |
| BstACI | GRCGYC | 1 cut(s) | 254 |
| BstAFI | CTTAAG | 2 cut(s) | 868, 889 |
| BstAUI | TGTACA | 1 cut(s) | 2392 |
| BstBAI | YACGTR | 1 cut(s) | 2495 |
| BstBI | TTCGAA | 1 cut(s) | 371 |
| BstF5I | GGATG | 8 cut(s) | 198, 448, 454, 469, 912, 1021, 1718, 2519 |
| BstFNI | CGCG | 1 cut(s) | 2473 |
| BstHHI | GCGC | 1 cut(s) | 2571 |
| BstKTI | GATC | 8 cut(s) | 325, 334, 817, 1123, 1279, 2368, 2426, 2578 |
| BstMBI | GATC | 8 cut(s) | 322, 331, 814, 1120, 1276, 2365, 2423, 2575 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 623, 1016, 1971, 2305 |
| BstNI | CCWGG | 5 cut(s) | 204, 279, 903, 1836, 2370 |
| BstNSI | RCATGY | 2 cut(s) | 1010, 2249 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 257 |
| BstSCI | CCNGG | 7 cut(s) | 202, 277, 901, 920, 921, 1834, 2368 |
| BstSFI | CTRYAG | 6 cut(s) | 288, 486, 508, 615, 1376, 1648 |
| BstSLI | GKGCMC | 1 cut(s) | 74 |
| BstUI | CGCG | 1 cut(s) | 2473 |
| BstV1I | GCAGC | 3 cut(s) | 629, 640, 1006 |
| BstV2I | GAAGAC | 2 cut(s) | 927, 1994 |
| BstX2I | RGATCY | 1 cut(s) | 2365 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 628 |
| BstYI | RGATCY | 1 cut(s) | 2365 |
| BstZ17I | GTATAC | 1 cut(s) | 1952 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1148, 1304 |
| BsuI | GTATCC | 1 cut(s) | 1495 |
| BsuRI | GGCC | 5 cut(s) | 106, 428, 724, 1960, 2256 |
| BtrI | CACGTC | 1 cut(s) | 1412 |
| BtsCI | GGATG | 8 cut(s) | 198, 448, 454, 469, 912, 1021, 1718, 2519 |
| BtsI | GCAGTG | 1 cut(s) | 2274 |
| BtsIMutI | CAGTG | 5 cut(s) | 72, 187, 1991, 2274, 2335 |
| BtuMI | TCGCGA | 1 cut(s) | 2473 |
| BveI | ACCTGC | 4 cut(s) | 148, 622, 1593, 1703 |
| CfoI | GCGC | 1 cut(s) | 2571 |
| Cfr13I | GGNCC | 4 cut(s) | 105, 426, 918, 1958 |
| Cfr9I | CCCGGG | 1 cut(s) | 921 |
| Csp6I | GTAC | 3 cut(s) | 1390, 2127, 2393 |
| CviAII | CATG | 9 cut(s) | 326, 751, 931, 1007, 2028, 2192, 2246, 2573, 2579 |
| CviQI | GTAC | 3 cut(s) | 1390, 2127, 2393 |
| DpnI | GATC | 8 cut(s) | 324, 333, 816, 1122, 1278, 2367, 2425, 2577 |
| DpnII | GATC | 8 cut(s) | 322, 331, 814, 1120, 1276, 2365, 2423, 2575 |
| DraI | TTTAAA | 3 cut(s) | 358, 1437, 1593 |
| DraIII | CACNNNGTG | 8 cut(s) | 1163, 1319, 1475, 1511, 1631, 1667, 1787, 2538 |
| Eam1104I | CTCTTC | 3 cut(s) | 129, 1860, 2409 |
| EarI | CTCTTC | 3 cut(s) | 129, 1860, 2409 |
| Eco130I | CCWWGG | 4 cut(s) | 266, 429, 621, 2055 |
| Eco147I | AGGCCT | 1 cut(s) | 724 |
| Eco24I | GRGCYC | 2 cut(s) | 928, 1976 |
| Eco31I | GGTCTC | 2 cut(s) | 750, 987 |
| Eco32I | GATATC | 3 cut(s) | 718, 2149, 2477 |
| Eco47I | GGWCC | 1 cut(s) | 918 |
| Eco57I | CTGAAG | 4 cut(s) | 1301, 1444, 1600, 1756 |
| Eco81I | CCTNAGG | 2 cut(s) | 1148, 1304 |
| Eco88I | CYCGRG | 3 cut(s) | 243, 585, 921 |
| EcoO109I | RGGNCCY | 2 cut(s) | 426, 918 |
| EcoRII | CCWGG | 5 cut(s) | 202, 277, 901, 1834, 2368 |
| EcoRV | GATATC | 3 cut(s) | 718, 2149, 2477 |
| EcoT14I | CCWWGG | 4 cut(s) | 266, 429, 621, 2055 |
| EcoT38I | GRGCYC | 2 cut(s) | 928, 1976 |
| ErhI | CCWWGG | 4 cut(s) | 266, 429, 621, 2055 |
| Esp3I | CGTCTC | 3 cut(s) | 40, 245, 467 |
| FaeI | CATG | 9 cut(s) | 329, 754, 934, 1010, 2031, 2195, 2249, 2576, 2582 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 862, 894, 2413, 2445 |
| FatI | CATG | 9 cut(s) | 325, 750, 930, 1006, 2027, 2191, 2245, 2572, 2578 |
| FbaI | TGATCA | 1 cut(s) | 2575 |
| FblI | GTMKAC | 3 cut(s) | 1951, 2067, 2450 |
| Fnu4HI | GCNGC | 3 cut(s) | 618, 654, 1020 |
| FokI | GGATG | 8 cut(s) | 185, 455, 461, 476, 919, 1028, 1705, 2506 |
| FriOI | GRGCYC | 2 cut(s) | 928, 1976 |
| Fsp4HI | GCNGC | 3 cut(s) | 618, 654, 1020 |
| FspBI | CTAG | 4 cut(s) | 267, 558, 2144, 2285 |
| GlaI | GCGC | 1 cut(s) | 2570 |
| GluI | GCNGC | 3 cut(s) | 618, 654, 1020 |
| GsuI | CTGGAG | 4 cut(s) | 1221, 1377, 1605, 2311 |
| HaeIII | GGCC | 5 cut(s) | 106, 428, 724, 1960, 2256 |
| HapII | CCGG | 2 cut(s) | 230, 922 |
| HhaI | GCGC | 1 cut(s) | 2571 |
| Hin1I | GRCGYC | 1 cut(s) | 254 |
| Hin1II | CATG | 9 cut(s) | 329, 754, 934, 1010, 2031, 2195, 2249, 2576, 2582 |
| Hin6I | GCGC | 1 cut(s) | 2569 |
| HinP1I | GCGC | 1 cut(s) | 2569 |
| HindIII | AAGCTT | 1 cut(s) | 1382 |
| HpaII | CCGG | 2 cut(s) | 230, 922 |
| Hpy166II | GTNNAC | 4 cut(s) | 72, 1952, 2068, 2451 |
| Hpy8I | GTNNAC | 4 cut(s) | 72, 1952, 2068, 2451 |
| Hpy99I | CGWCG | 2 cut(s) | 1416, 2140 |
| HpyCH4III | ACNGT | 4 cut(s) | 509, 1995, 2008, 2397 |
| HpyCH4IV | ACGT | 4 cut(s) | 254, 1267, 1411, 2494 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 623, 1016, 1971, 2305 |
| HpySE526I | ACGT | 4 cut(s) | 254, 1267, 1411, 2494 |
| Hsp92I | GRCGYC | 1 cut(s) | 254 |
| Hsp92II | CATG | 9 cut(s) | 329, 754, 934, 1010, 2031, 2195, 2249, 2576, 2582 |
| HspAI | GCGC | 1 cut(s) | 2569 |
| Ksp22I | TGATCA | 1 cut(s) | 2575 |
| Kzo9I | GATC | 8 cut(s) | 322, 331, 814, 1120, 1276, 2365, 2423, 2575 |
| LmnI | GCTCC | 3 cut(s) | 154, 193, 830 |
| Lsp1109I | GCAGC | 3 cut(s) | 629, 640, 1006 |
| LweI | GCATC | 4 cut(s) | 454, 1006, 1727, 2371 |
| MaeI | CTAG | 4 cut(s) | 267, 558, 2144, 2285 |
| MaeII | ACGT | 4 cut(s) | 254, 1267, 1411, 2494 |
| MaeIII | GTNAC | 8 cut(s) | 160, 259, 298, 694, 1407, 1901, 1913, 2050 |
| MalI | GATC | 8 cut(s) | 324, 333, 816, 1122, 1278, 2367, 2425, 2577 |
| MboI | GATC | 8 cut(s) | 322, 331, 814, 1120, 1276, 2365, 2423, 2575 |
| MflI | RGATCY | 1 cut(s) | 2365 |
| MhlI | GDGCHC | 5 cut(s) | 74, 198, 401, 928, 1976 |
| MmeI | TCCRAC | 1 cut(s) | 2487 |
| MseI | TTAA | 8 cut(s) | 357, 869, 890, 1436, 1592, 1749, 1934, 2099 |
| MslI | CAYNNNNRTG | 5 cut(s) | 67, 1116, 1428, 1740, 2577 |
| MspA1I | CMGCKG | 2 cut(s) | 1370, 2316 |
| MspCI | CTTAAG | 2 cut(s) | 868, 889 |
| MspI | CCGG | 2 cut(s) | 230, 922 |
| MspR9I | CCNGG | 7 cut(s) | 204, 279, 903, 922, 923, 1836, 2370 |
| Mva1269I | GAATGC | 6 cut(s) | 31, 1153, 1309, 1735, 1777, 1854 |
| MvaI | CCWGG | 5 cut(s) | 204, 279, 903, 1836, 2370 |
| MvnI | CGCG | 1 cut(s) | 2473 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 623, 1016, 1971, 2305 |
| NciI | CCSGG | 2 cut(s) | 922, 923 |
| NdeII | GATC | 8 cut(s) | 322, 331, 814, 1120, 1276, 2365, 2423, 2575 |
| NlaIII | CATG | 9 cut(s) | 329, 754, 934, 1010, 2031, 2195, 2249, 2576, 2582 |
| NlaIV | GGNNCC | 2 cut(s) | 826, 920 |
| NmuCI | GTSAC | 4 cut(s) | 259, 694, 1407, 1913 |
| NruI | TCGCGA | 1 cut(s) | 2473 |
| NspI | RCATGY | 2 cut(s) | 1010, 2249 |
| NspV | TTCGAA | 1 cut(s) | 371 |
| OliI | CACNNNNGTG | 1 cut(s) | 67 |
| PaeI | GCATGC | 1 cut(s) | 1010 |
| PaeR7I | CTCGAG | 1 cut(s) | 585 |
| PaqCI | CACCTGC | 1 cut(s) | 1703 |
| PasI | CCCWGGG | 1 cut(s) | 278 |
| PceI | AGGCCT | 1 cut(s) | 724 |
| PciI | ACATGT | 1 cut(s) | 2245 |
| PctI | GAATGC | 6 cut(s) | 31, 1153, 1309, 1735, 1777, 1854 |
| PfeI | GAWTC | 6 cut(s) | 1047, 1094, 1250, 2132, 2204, 2510 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1835 |
| PfoI | TCCNGGA | 1 cut(s) | 2368 |
| PkrI | GCNGC | 3 cut(s) | 619, 655, 1021 |
| Ppu21I | YACGTR | 1 cut(s) | 2495 |
| PpuMI | RGGWCCY | 1 cut(s) | 918 |
| PscI | ACATGT | 1 cut(s) | 2245 |
| PshAI | GACNNNNGTC | 1 cut(s) | 257 |
| PsiI | TTATAA | 3 cut(s) | 953, 1026, 2357 |
| Psp5II | RGGWCCY | 1 cut(s) | 918 |
| Psp6I | CCWGG | 5 cut(s) | 202, 277, 901, 1834, 2368 |
| PspGI | CCWGG | 5 cut(s) | 202, 277, 901, 1834, 2368 |
| PspN4I | GGNNCC | 2 cut(s) | 826, 920 |
| PspPI | GGNCC | 4 cut(s) | 105, 426, 918, 1958 |
| PspPPI | RGGWCCY | 1 cut(s) | 918 |
| PstI | CTGCAG | 2 cut(s) | 619, 1380 |
| PsuI | RGATCY | 1 cut(s) | 2365 |
| PvuII | CAGCTG | 2 cut(s) | 1370, 2316 |
| RruI | TCGCGA | 1 cut(s) | 2473 |
| RsaI | GTAC | 3 cut(s) | 1391, 2128, 2394 |
| RsaNI | GTAC | 3 cut(s) | 1390, 2127, 2393 |
| RseI | CAYNNNNRTG | 5 cut(s) | 67, 1116, 1428, 1740, 2577 |
| SaqAI | TTAA | 8 cut(s) | 357, 869, 890, 1436, 1592, 1749, 1934, 2099 |
| SatI | GCNGC | 3 cut(s) | 618, 654, 1020 |
| Sau3AI | GATC | 8 cut(s) | 322, 331, 814, 1120, 1276, 2365, 2423, 2575 |
| Sau96I | GGNCC | 4 cut(s) | 105, 426, 918, 1958 |
| ScrFI | CCNGG | 7 cut(s) | 204, 279, 903, 922, 923, 1836, 2370 |
| SduI | GDGCHC | 5 cut(s) | 74, 198, 401, 928, 1976 |
| SfaNI | GCATC | 4 cut(s) | 454, 1006, 1727, 2371 |
| SfcI | CTRYAG | 6 cut(s) | 288, 486, 508, 615, 1376, 1648 |
| Sfr274I | CTCGAG | 1 cut(s) | 585 |
| SfuI | TTCGAA | 1 cut(s) | 371 |
| SinI | GGWCC | 1 cut(s) | 918 |
| SlaI | CTCGAG | 1 cut(s) | 585 |
| SmaI | CCCGGG | 1 cut(s) | 923 |
| SmiI | ATTTAAAT | 1 cut(s) | 358 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 67, 1116, 1428, 1740, 2577 |
| SmlI | CTYRAG | 5 cut(s) | 470, 585, 868, 889, 1385 |
| SmoI | CTYRAG | 5 cut(s) | 470, 585, 868, 889, 1385 |
| SphI | GCATGC | 1 cut(s) | 1010 |
| SseBI | AGGCCT | 1 cut(s) | 724 |
| SspMI | CTAG | 4 cut(s) | 267, 558, 2144, 2285 |
| StuI | AGGCCT | 1 cut(s) | 724 |
| StyD4I | CCNGG | 7 cut(s) | 202, 277, 901, 920, 921, 1834, 2368 |
| StyI | CCWWGG | 4 cut(s) | 266, 429, 621, 2055 |
| SwaI | ATTTAAAT | 1 cut(s) | 358 |
| TaaI | ACNGT | 4 cut(s) | 509, 1995, 2008, 2397 |
| TaiI | ACGT | 4 cut(s) | 257, 1270, 1414, 2497 |
| TaqI | TCGA | 7 cut(s) | 334, 371, 586, 1183, 1339, 1495, 1807 |
| TaqII | GACCGA | 1 cut(s) | 969 |
| TatI | WGTACW | 3 cut(s) | 1389, 2126, 2392 |
| TfiI | GAWTC | 6 cut(s) | 1047, 1094, 1250, 2132, 2204, 2510 |
| Tru1I | TTAA | 8 cut(s) | 357, 869, 890, 1436, 1592, 1749, 1934, 2099 |
| Tru9I | TTAA | 8 cut(s) | 357, 869, 890, 1436, 1592, 1749, 1934, 2099 |
| TscAI | CASTG | 5 cut(s) | 72, 194, 1998, 2274, 2335 |
| TseFI | GTSAC | 4 cut(s) | 259, 694, 1407, 1913 |
| TseI | GCWGC | 3 cut(s) | 617, 653, 1019 |
| Tsp45I | GTSAC | 4 cut(s) | 259, 694, 1407, 1913 |
| TspDTI | ATGAA | 9 cut(s) | 750, 923, 1203, 1359, 1515, 1566, 1671, 1827, 2208 |
| TspGWI | ACGGA | 1 cut(s) | 2129 |
| TspMI | CCCGGG | 1 cut(s) | 921 |
| TspRI | CASTG | 5 cut(s) | 72, 194, 1998, 2274, 2335 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1835 |
| Vha464I | CTTAAG | 2 cut(s) | 868, 889 |
| VneI | GTGCAC | 1 cut(s) | 70 |
| VpaK11BI | GGWCC | 1 cut(s) | 918 |
| XapI | RAATTY | 4 cut(s) | 19, 874, 1919, 2035 |
| XbaI | TCTAGA | 2 cut(s) | 557, 2143 |
| XceI | RCATGY | 2 cut(s) | 1010, 2249 |
| XhoI | CTCGAG | 1 cut(s) | 585 |
| XmaI | CCCGGG | 1 cut(s) | 921 |
| XmaJI | CCTAGG | 1 cut(s) | 266 |
| XmiI | GTMKAC | 3 cut(s) | 1951, 2067, 2450 |
| XspI | CTAG | 4 cut(s) | 267, 558, 2144, 2285 |
| ZraI | GACGTC | 1 cut(s) | 255 |