AT1G29700
ERF Family

Beta-lactamase superfamily domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014201
Physical Location & Seq
Reverse (-)
10384945 .. 10387441
2497 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G29700.2

Sequence Viewer

Length: 1053 bp
ATGGCTCTAGTGGTGTCAGGTGGCAAAGCAGCCATGATGCCGCTTCATGCCAATTCTCTTCCTCTAAGTATCAACACCAAATCAAGAGTACTAAGTGCATCAGCATTTCCACTATTCTCGTCCACTCCTCACCTCCCTTCCAGATCCCTCTCCATCCGCCTCTCGCCGAATGTTTCCCGGTCTCTCACTGTGGTATCTTCTGTTTTGTCAGAGGACAGAGCTACTAACGTTAGTGGCTCTGGGACAGATGCATTCAAGCTGACTTACTTGGAGGGCAATAGCTGGCTATGGGAAACAGCTGGACTGAAAATCCTAGTTGATCCGATTCTTGTGGGTAATTTGGACTTTGGAATCCCATGGCTTTATGATGCTGCCAAGAGATATTTGAAGGCCTTCAAGCTTGATGATCTCCCTGAAGTTGATTGCCTTCTCATAACTCAAAGCCTTGATGATCATTGTCATTTGAATACCCTTAGGCCACTTTCCGAGAAATCTCCAGGCATAAAGGTTATAGCAACCCCAAATGCTAAGCCTTTGCTAGATCCTCTTTTTAGTAACGTCACTTATCTGGAACCTGGAGATAGCTTTGAGCTAAATGCAAGAAACGGTTCTAAGGTTCGAGTTAAAGCCACAGCTGGACCTGTCCTTGGTCCACCGTGGCAACGCCCTGAAAACGGGTATCTCCTTGTATCCCCTGAAGATCAGATATCTCTCTACTATGAACCGCATTGTGTATGCAACATGGAACTTCTGAAGAATGAAAGAGCCGACATTGTAATCACACCGGTCATCAAACAACTTCTCCCACGATTTACTCTTGTTTCTGGTCAAGAAGACGCTGTCCAGCTTGCCAAACTCTTGAAAGCCAAGTTTGTTGTGCCGATGCAAAATGGCGAGCTTGAAGCAAAGGGACTTTTAGCAAGCCTAGTAAAGAAAGAAGGAACTATTGAATCATTTAAGGAATTATTGTTAAAAGAGCTCCCAGAAGCTCAAGTGTTGGAGCCTATAGCAGGTATACCGCTAGAGATCTTGGTTCCATCTTCAGACATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lactamase_B_3

Protein Analysis

350

Amino Acids

38.15

Weight (kDa)

5.83

Isoelectric Point (pI)

34.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lactamase_B_3 PF13483 86 - 296 8.5e-36 Beta-lactamase superfamily domain
Lactamase_B_2 PF12706 104 - 295 1.7e-06 Beta-lactamase superfamily domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29700 AT1G29700
fragaria_vesca FvH4_4g27971
malus_domestica MD13G1045600.v1.1 MD16G1046900.v1.1
prunus_persica Prupe.1G306400_v2.0.a1
pyrus_communis pycom16g04120
rosa_chinensis RchiOBHm_Chr4g0435691
rosa_laevigata RLG00000006566
rosa_multiflora Rmu_sc0000051.1_g000014
rosa_roxburghii Rroxscaffold_5G00376900
rosa_rugosa Rorug04G0288600
rosa_samantha Rh4AG343200 Rh4BG351600 Rh4CG366200 Rh4DG345800
rosa_wichuraiana Rw4G029960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1001
AccI GTMKAC 1 cut(s) 1015
AciI CCGC 4 cut(s) 41, 157, 725, 1019
AclI AACGTT 1 cut(s) 228
AclWI GGATC 3 cut(s) 138, 314, 536
AcuI CTGAAG 4 cut(s) 435, 717, 773, 1026
AfaI GTAC 1 cut(s) 90
AfiI CCNNNNNNNGG 3 cut(s) 647, 674, 1010
AgeI ACCGGT 1 cut(s) 784
AgsI TTSAA 7 cut(s) 256, 388, 397, 466, 862, 902, 950
AjnI CCWGG 2 cut(s) 496, 574
Alw21I GWGCWC 1 cut(s) 981
Alw26I GTCTC 1 cut(s) 186
AlwI GGATC 3 cut(s) 138, 314, 536
AoxI GGCC 2 cut(s) 390, 476
ApeKI GCWGC 2 cut(s) 29, 371
AsiGI ACCGGT 1 cut(s) 784
Asp700I GAANNNNTTC 2 cut(s) 392, 607
AspS9I GGNCC 2 cut(s) 638, 650
AsuC2I CCSGG 1 cut(s) 178
AsuHPI GGTGA 1 cut(s) 122
AvaII GGWCC 2 cut(s) 638, 650
AxyI CCTNAGG 1 cut(s) 473
BaeI ACNNNNGTAYC 2 cut(s) 177, 210
BanII GRGCYC 1 cut(s) 981
BbsI GAAGAC 1 cut(s) 840
Bbv12I GWGCWC 1 cut(s) 981
BbvI GCAGC 2 cut(s) 41, 358
BccI CCATC 2 cut(s) 161, 1045
BciT130I CCWGG 2 cut(s) 498, 576
BciVI GTATCC 1 cut(s) 700
BclI TGATCA 1 cut(s) 451
BcnI CCSGG 1 cut(s) 178
BcoDI GTCTC 1 cut(s) 186
BfaI CTAG 5 cut(s) 8, 314, 539, 926, 1022
BfmI CTRYAG 1 cut(s) 1005
BfuAI ACCTGC 1 cut(s) 1001
BfuI GTATCC 1 cut(s) 700
BglII AGATCT 1 cut(s) 1026
BisI GCNGC 3 cut(s) 30, 41, 372
BlpI GCTNAGC 1 cut(s) 528
BlsI GCNGC 3 cut(s) 31, 42, 373
BmcAI AGTACT 1 cut(s) 90
Bme1390I CCNGG 3 cut(s) 178, 498, 576
Bme18I GGWCC 2 cut(s) 638, 650
BmgT120I GGNCC 2 cut(s) 638, 650
BmiI GGNNCC 3 cut(s) 573, 1002, 1035
BmrFI CCNGG 3 cut(s) 178, 498, 576
BmsI GCATC 5 cut(s) 27, 107, 238, 358, 873
BpiI GAAGAC 1 cut(s) 840
BpmI CTGGAG 2 cut(s) 480, 597
Bpu1102I GCTNAGC 1 cut(s) 528
BpuEI CTTGAG 1 cut(s) 975
BpuMI CCSGG 1 cut(s) 178
BsaI GGTCTC 1 cut(s) 186
BsaJI CCNNGG 3 cut(s) 356, 646, 656
BsaWI WCCGGW 1 cut(s) 784
BsaXI ACNNNNNCTCC 2 cut(s) 786, 816
Bsc4I CCNNNNNNNGG 3 cut(s) 647, 674, 1010
Bse118I RCCGGY 1 cut(s) 784
Bse21I CCTNAGG 1 cut(s) 473
BseBI CCWGG 2 cut(s) 498, 576
BseDI CCNNGG 3 cut(s) 356, 646, 656
BseGI GGATG 1 cut(s) 153
BseLI CCNNNNNNNGG 3 cut(s) 647, 674, 1010
BseRI GAGGAG 1 cut(s) 117
BseXI GCAGC 2 cut(s) 41, 358
BshFI GGCC 2 cut(s) 392, 478
BshTI ACCGGT 1 cut(s) 784
BsiHKAI GWGCWC 1 cut(s) 981
BsiSI CCGG 2 cut(s) 178, 785
BslFI GGGAC 2 cut(s) 256, 924
BslI CCNNNNNNNGG 3 cut(s) 647, 674, 1010
BsmAI GTCTC 1 cut(s) 186
BsmFI GGGAC 2 cut(s) 256, 924
BsmI GAATGC 1 cut(s) 251
BsnI GGCC 2 cut(s) 392, 478
Bso31I GGTCTC 1 cut(s) 186
Bsp1286I GDGCHC 1 cut(s) 981
Bsp143I GATC 7 cut(s) 143, 319, 406, 451, 541, 700, 1026
Bsp1720I GCTNAGC 1 cut(s) 528
Bsp19I CCATGG 1 cut(s) 356
BspACI CCGC 4 cut(s) 41, 157, 725, 1019
BspANI GGCC 2 cut(s) 392, 478
BspLI GGNNCC 3 cut(s) 573, 1002, 1035
BspMI ACCTGC 1 cut(s) 1001
BspPI GGATC 3 cut(s) 138, 314, 536
BspTNI GGTCTC 1 cut(s) 186
BsrFI RCCGGY 1 cut(s) 784
BssAI RCCGGY 1 cut(s) 784
BssECI CCNNGG 3 cut(s) 356, 646, 656
BssMI GATC 7 cut(s) 143, 319, 406, 451, 541, 700, 1026
BssNAI GTATAC 1 cut(s) 1016
BssT1I CCWWGG 2 cut(s) 356, 646
Bst1107I GTATAC 1 cut(s) 1016
Bst2UI CCWGG 2 cut(s) 498, 576
Bst4CI ACNGT 3 cut(s) 190, 608, 657
Bst6I CTCTTC 1 cut(s) 63
BstC8I GCNNGC 4 cut(s) 284, 849, 896, 922
BstDEI CTNAG 5 cut(s) 65, 92, 473, 528, 612
BstDSI CCRYGG 2 cut(s) 356, 656
BstENI CCTNNNNNAGG 1 cut(s) 1008
BstF5I GGATG 1 cut(s) 153
BstKTI GATC 7 cut(s) 146, 322, 409, 454, 544, 703, 1029
BstMAI GTCTC 1 cut(s) 186
BstMBI GATC 7 cut(s) 143, 319, 406, 451, 541, 700, 1026
BstNI CCWGG 2 cut(s) 498, 576
BstSCI CCNGG 3 cut(s) 176, 496, 574
BstSFI CTRYAG 1 cut(s) 1005
BstV1I GCAGC 2 cut(s) 41, 358
BstV2I GAAGAC 1 cut(s) 840
BstX2I RGATCY 3 cut(s) 143, 541, 1026
BstYI RGATCY 3 cut(s) 143, 541, 1026
BstZ17I GTATAC 1 cut(s) 1016
Bsu36I CCTNAGG 1 cut(s) 473
BsuI GTATCC 1 cut(s) 700
BsuRI GGCC 2 cut(s) 392, 478
BtgI CCRYGG 2 cut(s) 356, 656
BtsCI GGATG 1 cut(s) 153
BtsIMutI CAGTG 1 cut(s) 186
BveI ACCTGC 1 cut(s) 1001
Cac8I GCNNGC 4 cut(s) 284, 849, 896, 922
Cfr10I RCCGGY 1 cut(s) 784
Cfr13I GGNCC 2 cut(s) 638, 650
CseI GACGC 1 cut(s) 845
Csp6I GTAC 1 cut(s) 89
CspAI ACCGGT 1 cut(s) 784
CviAII CATG 4 cut(s) 34, 47, 357, 742
CviQI GTAC 1 cut(s) 89
DdeI CTNAG 5 cut(s) 65, 92, 473, 528, 612
DpnI GATC 7 cut(s) 145, 321, 408, 453, 543, 702, 1028
DpnII GATC 7 cut(s) 143, 319, 406, 451, 541, 700, 1026
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
EciI GGCGGA 1 cut(s) 146
Ecl136II GAGCTC 1 cut(s) 979
Eco130I CCWWGG 2 cut(s) 356, 646
Eco147I AGGCCT 1 cut(s) 392
Eco24I GRGCYC 1 cut(s) 981
Eco31I GGTCTC 1 cut(s) 186
Eco32I GATATC 1 cut(s) 708
Eco47I GGWCC 2 cut(s) 638, 650
Eco53kI GAGCTC 1 cut(s) 979
Eco57I CTGAAG 4 cut(s) 435, 717, 773, 1026
Eco81I CCTNAGG 1 cut(s) 473
EcoICRI GAGCTC 1 cut(s) 979
EcoNI CCTNNNNNAGG 1 cut(s) 1008
EcoRII CCWGG 2 cut(s) 496, 574
EcoRV GATATC 1 cut(s) 708
EcoT14I CCWWGG 2 cut(s) 356, 646
EcoT22I ATGCAT 1 cut(s) 253
EcoT38I GRGCYC 1 cut(s) 981
ErhI CCWWGG 2 cut(s) 356, 646
FaeI CATG 4 cut(s) 37, 50, 360, 745
FaqI GGGAC 2 cut(s) 256, 924
FatI CATG 4 cut(s) 33, 46, 356, 741
FbaI TGATCA 1 cut(s) 451
FblI GTMKAC 1 cut(s) 1015
Fnu4HI GCNGC 3 cut(s) 30, 41, 372
FokI GGATG 1 cut(s) 140
FriOI GRGCYC 1 cut(s) 981
Fsp4HI GCNGC 3 cut(s) 30, 41, 372
FspBI CTAG 5 cut(s) 8, 314, 539, 926, 1022
GluI GCNGC 3 cut(s) 30, 41, 372
GsuI CTGGAG 2 cut(s) 480, 597
HaeIII GGCC 2 cut(s) 392, 478
HapII CCGG 2 cut(s) 178, 785
HgaI GACGC 1 cut(s) 845
Hin1II CATG 4 cut(s) 37, 50, 360, 745
HindIII AAGCTT 1 cut(s) 398
HinfI GANTC 3 cut(s) 325, 351, 950
HpaII CCGG 2 cut(s) 178, 785
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 3 cut(s) 123, 653, 1016
Hpy188I TCNGA 6 cut(s) 211, 324, 487, 705, 753, 1045
Hpy188III TCNNGA 5 cut(s) 84, 141, 569, 830, 859
Hpy8I GTNNAC 3 cut(s) 123, 653, 1016
HpyAV CCTTC 5 cut(s) 147, 382, 403, 437, 932
HpyCH4III ACNGT 3 cut(s) 190, 608, 657
HpyCH4IV ACGT 2 cut(s) 228, 558
HpyCH4V TGCA 5 cut(s) 98, 251, 599, 738, 886
HpyF3I CTNAG 5 cut(s) 65, 92, 473, 528, 612
HpySE526I ACGT 2 cut(s) 228, 558
Hsp92II CATG 4 cut(s) 37, 50, 360, 745
Ksp22I TGATCA 1 cut(s) 451
Kzo9I GATC 7 cut(s) 143, 319, 406, 451, 541, 700, 1026
LmnI GCTCC 2 cut(s) 984, 1000
Lsp1109I GCAGC 2 cut(s) 41, 358
LweI GCATC 5 cut(s) 27, 107, 238, 358, 873
MaeI CTAG 5 cut(s) 8, 314, 539, 926, 1022
MaeII ACGT 2 cut(s) 228, 558
MaeIII GTNAC 2 cut(s) 554, 559
MalI GATC 7 cut(s) 145, 321, 408, 453, 543, 702, 1028
MboI GATC 7 cut(s) 143, 319, 406, 451, 541, 700, 1026
MboII GAAGA 6 cut(s) 50, 189, 710, 766, 845, 1032
MflI RGATCY 3 cut(s) 143, 541, 1026
MhlI GDGCHC 1 cut(s) 981
MluCI AATT 3 cut(s) 52, 337, 962
MmeI TCCRAC 1 cut(s) 978
MnlI CCTC 8 cut(s) 72, 138, 143, 158, 170, 205, 265, 555
Mph1103I ATGCAT 1 cut(s) 253
MroXI GAANNNNTTC 2 cut(s) 392, 607
MseI TTAA 3 cut(s) 624, 957, 971
MspA1I CMGCKG 2 cut(s) 299, 635
MspI CCGG 2 cut(s) 178, 785
MspR9I CCNGG 3 cut(s) 178, 498, 576
Mva1269I GAATGC 1 cut(s) 251
MvaI CCWGG 2 cut(s) 498, 576
NciI CCSGG 1 cut(s) 178
NcoI CCATGG 1 cut(s) 356
NdeII GATC 7 cut(s) 143, 319, 406, 451, 541, 700, 1026
NlaIII CATG 4 cut(s) 37, 50, 360, 745
NlaIV GGNNCC 3 cut(s) 573, 1002, 1035
NmuCI GTSAC 1 cut(s) 559
NsiI ATGCAT 1 cut(s) 253
PceI AGGCCT 1 cut(s) 392
PctI GAATGC 1 cut(s) 251
PdmI GAANNNNTTC 2 cut(s) 392, 607
PfeI GAWTC 3 cut(s) 325, 351, 950
PflFI GACNNNGTC 1 cut(s) 839
PinAI ACCGGT 1 cut(s) 784
PkrI GCNGC 3 cut(s) 31, 42, 373
Psp124BI GAGCTC 1 cut(s) 981
Psp1406I AACGTT 1 cut(s) 228
Psp6I CCWGG 2 cut(s) 496, 574
PspGI CCWGG 2 cut(s) 496, 574
PspN4I GGNNCC 3 cut(s) 573, 1002, 1035
PspPI GGNCC 2 cut(s) 638, 650
PsuI RGATCY 3 cut(s) 143, 541, 1026
PsyI GACNNNGTC 1 cut(s) 839
PvuII CAGCTG 2 cut(s) 299, 635
RsaI GTAC 1 cut(s) 90
RsaNI GTAC 1 cut(s) 89
SacI GAGCTC 1 cut(s) 981
SaqAI TTAA 3 cut(s) 624, 957, 971
SatI GCNGC 3 cut(s) 30, 41, 372
Sau3AI GATC 7 cut(s) 143, 319, 406, 451, 541, 700, 1026
Sau96I GGNCC 2 cut(s) 638, 650
ScaI AGTACT 1 cut(s) 90
ScrFI CCNGG 3 cut(s) 178, 498, 576
SduI GDGCHC 1 cut(s) 981
SfaNI GCATC 5 cut(s) 27, 107, 238, 358, 873
SfcI CTRYAG 1 cut(s) 1005
SinI GGWCC 2 cut(s) 638, 650
SmlI CTYRAG 1 cut(s) 990
SmoI CTYRAG 1 cut(s) 990
Sse9I AATT 3 cut(s) 52, 337, 962
SseBI AGGCCT 1 cut(s) 392
SsiI CCGC 4 cut(s) 41, 157, 725, 1019
SspMI CTAG 5 cut(s) 8, 314, 539, 926, 1022
SstI GAGCTC 1 cut(s) 981
StuI AGGCCT 1 cut(s) 392
StyD4I CCNGG 3 cut(s) 176, 496, 574
StyI CCWWGG 2 cut(s) 356, 646
TaaI ACNGT 3 cut(s) 190, 608, 657
TaiI ACGT 2 cut(s) 231, 561
TaqI TCGA 1 cut(s) 619
TasI AATT 3 cut(s) 52, 337, 962
TatI WGTACW 1 cut(s) 88
TauI GCSGC 1 cut(s) 43
TfiI GAWTC 3 cut(s) 325, 351, 950
Tru1I TTAA 3 cut(s) 624, 957, 971
Tru9I TTAA 3 cut(s) 624, 957, 971
TscAI CASTG 1 cut(s) 193
TseFI GTSAC 1 cut(s) 559
TseI GCWGC 2 cut(s) 29, 371
Tsp45I GTSAC 1 cut(s) 559
TspDTI ATGAA 3 cut(s) 35, 735, 774
TspRI CASTG 1 cut(s) 193
Tth111I GACNNNGTC 1 cut(s) 839
VpaK11BI GGWCC 2 cut(s) 638, 650
XagI CCTNNNNNAGG 1 cut(s) 1008
XmiI GTMKAC 1 cut(s) 1015
XmnI GAANNNNTTC 2 cut(s) 392, 607
XspI CTAG 5 cut(s) 8, 314, 539, 926, 1022
ZrmI AGTACT 1 cut(s) 90
Zsp2I ATGCAT 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.