Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0014201

Physical Location & Seq

Genomic Coordinates Reverse (-)

46173532 .. 46174159

Gene Structure 628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0288600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGAGGACCATACTTACCCTTTGCGTCGTTGGCTTGGTGTTGACGGTGGCATCTCTAGAAGCCGATGCTAAACGGTTTGTTTTGGTTCAAGTTAAAACTGATCCAAATATGGATCAAAACCCTGAGGTTCTTGCTAGTGGTGGTGCAAAAGATCAATCTCAGTCTCTGTCCCATACCGCAAGTAAGGGTAGCAGCAGCAGCGACGCAAAGCATGATGATCATGATGACGATATTCTTGGTAAGTACAGTAATGGCGCTACAACCCAATGCATGGCAGATAAAAAGAGGCCTCATTGTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lactamase_B_3

Protein Analysis

100

Amino Acids

10.71

Weight (kDa)

6.38

Isoelectric Point (pI)

32.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29700 AT1G29700
fragaria_vesca	FvH4_4g27971
malus_domestica	MD13G1045600.v1.1 MD16G1046900.v1.1
prunus_persica	Prupe.1G306400_v2.0.a1
pyrus_communis	pycom16g04120
rosa_chinensis	RchiOBHm_Chr4g0435691
rosa_laevigata	RLG00000006566
rosa_multiflora	Rmu_sc0000051.1_g000014
rosa_roxburghii	Rroxscaffold_5G00376900
rosa_rugosa	Rorug04G0288600
rosa_samantha	Rh4AG343200 Rh4BG351600 Rh4CG366200 Rh4DG345800
rosa_wichuraiana	Rw4G029960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	271
AciI	CCGC	1 cut(s)	177
AclWI	GGATC	2 cut(s)	95, 120
AfaI	GTAC	1 cut(s)	245
AfiI	CCNNNNNNNGG	1 cut(s)	271
AgsI	TTSAA	1 cut(s)	89
Alw26I	GTCTC	1 cut(s)	168
AlwI	GGATC	2 cut(s)	95, 120
AlwNI	CAGNNNCTG	1 cut(s)	166
AoxI	GGCC	1 cut(s)	287
ApeKI	GCWGC	3 cut(s)	192, 195, 198
AspLEI	GCGC	1 cut(s)	257
AspS9I	GGNCC	1 cut(s)	6
AvaII	GGWCC	1 cut(s)	6
AxyI	CCTNAGG	1 cut(s)	123
BbvI	GCAGC	3 cut(s)	204, 207, 210
BclI	TGATCA	1 cut(s)	217
BcoDI	GTCTC	1 cut(s)	168
BfaI	CTAG	2 cut(s)	56, 135
BfoI	RGCGCY	1 cut(s)	258
BisI	GCNGC	3 cut(s)	193, 196, 199
BlsI	GCNGC	3 cut(s)	194, 197, 200
Bme18I	GGWCC	1 cut(s)	6
BmgT120I	GGNCC	1 cut(s)	6
BmsI	GCATC	2 cut(s)	55, 59
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse21I	CCTNAGG	1 cut(s)	123
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseMII	CTCAG	2 cut(s)	114, 173
BseXI	GCAGC	3 cut(s)	204, 207, 210
BshFI	GGCC	1 cut(s)	289
BslFI	GGGAC	1 cut(s)	154
BslI	CCNNNNNNNGG	1 cut(s)	271
BsmAI	GTCTC	1 cut(s)	168
BsmFI	GGGAC	1 cut(s)	154
BsnI	GGCC	1 cut(s)	289
Bsp143I	GATC	4 cut(s)	100, 112, 151, 217
BspACI	CCGC	1 cut(s)	177
BspANI	GGCC	1 cut(s)	289
BspCNI	CTCAG	2 cut(s)	115, 172
BspHI	TCATGA	1 cut(s)	220
BspPI	GGATC	2 cut(s)	95, 120
BssMI	GATC	4 cut(s)	100, 112, 151, 217
Bst4CI	ACNGT	3 cut(s)	46, 75, 248
BstDEI	CTNAG	2 cut(s)	123, 159
BstH2I	RGCGCY	1 cut(s)	258
BstHHI	GCGC	1 cut(s)	257
BstKTI	GATC	4 cut(s)	103, 115, 154, 220
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	4 cut(s)	100, 112, 151, 217
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 198
BstV1I	GCAGC	3 cut(s)	204, 207, 210
Bsu36I	CCTNAGG	1 cut(s)	123
BsuRI	GGCC	1 cut(s)	289
CaiI	CAGNNNCTG	1 cut(s)	166
CciI	TCATGA	1 cut(s)	220
CfoI	GCGC	1 cut(s)	257
Cfr13I	GGNCC	1 cut(s)	6
CseI	GACGC	2 cut(s)	13, 212
Csp6I	GTAC	1 cut(s)	244
CviAII	CATG	3 cut(s)	212, 221, 271
CviJI	RGCY	3 cut(s)	33, 62, 289
CviKI_1	RGCY	3 cut(s)	33, 62, 289
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	2 cut(s)	123, 159
DpnI	GATC	4 cut(s)	102, 114, 153, 219
DpnII	GATC	4 cut(s)	100, 112, 151, 217
Eco147I	AGGCCT	1 cut(s)	289
Eco47I	GGWCC	1 cut(s)	6
Eco81I	CCTNAGG	1 cut(s)	123
EcoT22I	ATGCAT	1 cut(s)	272
FaeI	CATG	3 cut(s)	215, 224, 274
FaiI	YATR	6 cut(s)	11, 110, 174, 213, 222, 272
FaqI	GGGAC	1 cut(s)	154
FatI	CATG	3 cut(s)	211, 220, 270
FbaI	TGATCA	1 cut(s)	217
Fnu4HI	GCNGC	3 cut(s)	193, 196, 199
Fsp4HI	GCNGC	3 cut(s)	193, 196, 199
FspBI	CTAG	2 cut(s)	56, 135
GlaI	GCGC	1 cut(s)	256
GluI	GCNGC	3 cut(s)	193, 196, 199
HaeII	RGCGCY	1 cut(s)	258
HaeIII	GGCC	1 cut(s)	289
HgaI	GACGC	2 cut(s)	13, 212
HhaI	GCGC	1 cut(s)	257
Hin1II	CATG	3 cut(s)	215, 224, 274
Hin6I	GCGC	1 cut(s)	255
HinP1I	GCGC	1 cut(s)	255
HincII	GTYRAC	1 cut(s)	42
HindII	GTYRAC	1 cut(s)	42
Hpy166II	GTNNAC	1 cut(s)	42
Hpy188III	TCNNGA	2 cut(s)	56, 221
Hpy8I	GTNNAC	1 cut(s)	42
Hpy99I	CGWCG	2 cut(s)	29, 206
HpyCH4III	ACNGT	3 cut(s)	46, 75, 248
HpyCH4V	TGCA	2 cut(s)	146, 270
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 198
HpyF3I	CTNAG	2 cut(s)	123, 159
Hsp92II	CATG	3 cut(s)	215, 224, 274
HspAI	GCGC	1 cut(s)	255
Ksp22I	TGATCA	1 cut(s)	217
Kzo9I	GATC	4 cut(s)	100, 112, 151, 217
LpnPI	CCDG	1 cut(s)	135
Lsp1109I	GCAGC	3 cut(s)	204, 207, 210
LweI	GCATC	2 cut(s)	55, 59
MaeI	CTAG	2 cut(s)	56, 135
MalI	GATC	4 cut(s)	102, 114, 153, 219
MboI	GATC	4 cut(s)	100, 112, 151, 217
MnlI	CCTC	3 cut(s)	118, 279, 300
Mph1103I	ATGCAT	1 cut(s)	272
MseI	TTAA	2 cut(s)	93, 301
MwoI	GCNNNNNNNGC	2 cut(s)	30, 198
NdeII	GATC	4 cut(s)	100, 112, 151, 217
NlaIII	CATG	3 cut(s)	215, 224, 274
NsiI	ATGCAT	1 cut(s)	272
PagI	TCATGA	1 cut(s)	220
PceI	AGGCCT	1 cut(s)	289
PflMI	CCANNNNNTGG	1 cut(s)	271
PkrI	GCNGC	3 cut(s)	194, 197, 200
PspPI	GGNCC	1 cut(s)	6
PstNI	CAGNNNCTG	1 cut(s)	166
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
SaqAI	TTAA	2 cut(s)	93, 301
SatI	GCNGC	3 cut(s)	193, 196, 199
Sau3AI	GATC	4 cut(s)	100, 112, 151, 217
Sau96I	GGNCC	1 cut(s)	6
SetI	ASST	1 cut(s)	129
SfaNI	GCATC	2 cut(s)	55, 59
SinI	GGWCC	1 cut(s)	6
SseBI	AGGCCT	1 cut(s)	289
SsiI	CCGC	1 cut(s)	177
SspMI	CTAG	2 cut(s)	56, 135
StuI	AGGCCT	1 cut(s)	289
TaaI	ACNGT	3 cut(s)	46, 75, 248
TatI	WGTACW	1 cut(s)	243
Tru1I	TTAA	2 cut(s)	93, 301
Tru9I	TTAA	2 cut(s)	93, 301
TseI	GCWGC	3 cut(s)	192, 195, 198
Van91I	CCANNNNNTGG	1 cut(s)	271
VpaK11BI	GGWCC	1 cut(s)	6
XbaI	TCTAGA	1 cut(s)	55
XspI	CTAG	2 cut(s)	56, 135
Zsp2I	ATGCAT	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.