FvH4_4g27971
ERF Family

Beta-lactamase superfamily domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0014201
Physical Location & Seq
Forward (+)
28766366 .. 28769553
3188 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g27971.t1

Sequence Viewer

Length: 1053 bp
ATGGCTGTTGCTCAGTGCAGCCATCTTCCCAAACCATGTTCAAATAAAACACACTTATCCCCTTTCTCACACTCTCCAGTTCTCTCTTCTATTAGAGCCACTCAAATTTGCTCAAGTTTCAAACCAGTAAGGCTTTCAATGTCCAGGTCTCATGTCTCTAAGTCACACGTTTACAGGAGACGTGAGGTTGTTTCTGCTTTGGTTTCTGAGGAAAACGCAGTCACGTCTAGTTCGTCTGATGATACTGATGGTTTCAAACTCACTTACTTGGAGGGAAATAGTTGGTTGTGGGATGTGGGTGGAGTGAAACTATTGGTGGATCCAATCTTGGTGGGTAATTTGGATTTTGGAATCCCTTGGCTTTATGATGCTGCCAAGAGGTTTTTGAAGAATTTCCAGCTAACTGATGTTCCAGAAGTTGATTGCTTACTGATTACACAAAGCCTTGATGATCACTGCCATTTGAAGACGTTAAAGCCCCTCTCGGAGAAGTACCCAACTCTTAGAGTAATAGCTACTCCAAATGCTAAGGCATTGTTGGATCCCCTTTTCAGCAATGTCACGTATCTGGAACCTGGTCAGAGCTCCACTATTGAAGCAAGGAACGGGGCTAAAGTCAAAGTTCAGGCCACTGCAGGGCCAGTTCTAGGTCCTCCTTGGCAGCGCCCTGAAAACGGATATCTAGTCATTTCTCCACAAGAAAAATTGACTCTTTACTATGAACCCCATTGTGTATATAACACTGGTTCAGTGGAGAAGGAAAGGGCTGACATTGTCATCACACCGGTCATAAAGCAGCTTCTTCCATATTTCACTCTGGTCTCGGGACAAGAAGATGCAGTTCAACTTGCAAAGCTTCTTGATGCCAAGTTCATCGTCCCAATGAGAAATGGGGAGTTGGAGAGCAAAGGGTTGCTTGCTAGTATAGTCAAATCTGAAGGAACAATAGAATCATTCAAGGAACTTCTATCCAAGGAATTACCAGATGCACAAGTACTAGAGCCAACTCCTGGTGTACCGCTAGATGTGCCACCACTTTCAAACCTTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lactamase_B_3

Protein Analysis

351

Amino Acids

38.54

Weight (kDa)

6.26

Isoelectric Point (pI)

39.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lactamase_B_3 PF13483 86 - 295 2.7e-33 Beta-lactamase superfamily domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29700 AT1G29700
fragaria_vesca FvH4_4g27971
malus_domestica MD13G1045600.v1.1 MD16G1046900.v1.1
prunus_persica Prupe.1G306400_v2.0.a1
pyrus_communis pycom16g04120
rosa_chinensis RchiOBHm_Chr4g0435691
rosa_laevigata RLG00000006566
rosa_multiflora Rmu_sc0000051.1_g000014
rosa_roxburghii Rroxscaffold_5G00376900
rosa_rugosa Rorug04G0288600
rosa_samantha Rh4AG343200 Rh4BG351600 Rh4CG366200 Rh4DG345800
rosa_wichuraiana Rw4G029960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1010
AciI CCGC 1 cut(s) 1019
AclWI GGATC 4 cut(s) 314, 327, 536, 549
AcsI RAATTY 2 cut(s) 105, 391
AcuI CTGAAG 1 cut(s) 957
AfaI GTAC 3 cut(s) 494, 996, 1017
AfiI CCNNNNNNNGG 4 cut(s) 636, 647, 674, 1010
AflIII ACRYGT 1 cut(s) 166
AgeI ACCGGT 1 cut(s) 784
AjiI CACGTC 2 cut(s) 182, 225
AjnI CCWGG 3 cut(s) 143, 574, 1009
AluBI AGCT 5 cut(s) 400, 515, 585, 799, 856
AluI AGCT 5 cut(s) 400, 515, 585, 799, 856
Alw21I GWGCWC 1 cut(s) 587
Alw26I GTCTC 4 cut(s) 153, 160, 172, 826
AlwI GGATC 4 cut(s) 314, 327, 536, 549
Ama87I CYCGRG 1 cut(s) 823
AoxI GGCC 2 cut(s) 627, 638
ApeKI GCWGC 4 cut(s) 18, 371, 661, 796
ApoI RAATTY 2 cut(s) 105, 391
AsiGI ACCGGT 1 cut(s) 784
Asp700I GAANNNNTTC 1 cut(s) 392
AspLEI GCGC 1 cut(s) 666
AspS9I GGNCC 2 cut(s) 638, 650
AvaI CYCGRG 1 cut(s) 823
AvaII GGWCC 1 cut(s) 650
BamHI GGATCC 2 cut(s) 319, 541
BanII GRGCYC 1 cut(s) 587
BbsI GAAGAC 1 cut(s) 473
Bbv12I GWGCWC 1 cut(s) 587
BbvI GCAGC 4 cut(s) 30, 358, 673, 808
BccI CCATC 2 cut(s) 30, 242
BciT130I CCWGG 3 cut(s) 145, 576, 1011
BclI TGATCA 1 cut(s) 451
BcoDI GTCTC 4 cut(s) 153, 160, 172, 826
BfaI CTAG 6 cut(s) 228, 647, 683, 921, 998, 1022
BfmI CTRYAG 1 cut(s) 633
BfoI RGCGCY 1 cut(s) 667
BisI GCNGC 4 cut(s) 19, 372, 662, 797
BlsI GCNGC 4 cut(s) 20, 373, 663, 798
BmcAI AGTACT 1 cut(s) 996
Bme1390I CCNGG 3 cut(s) 145, 576, 1011
Bme18I GGWCC 1 cut(s) 650
BmeT110I CYCGRG 1 cut(s) 823
BmgBI CACGTC 2 cut(s) 182, 225
BmgT120I GGNCC 2 cut(s) 638, 650
BmiI GGNNCC 3 cut(s) 321, 543, 573
BmrFI CCNGG 3 cut(s) 145, 576, 1011
BmsI GCATC 4 cut(s) 358, 826, 853, 976
BpiI GAAGAC 1 cut(s) 473
BpmI CTGGAG 1 cut(s) 60
Bpu10I CCTNAGC 1 cut(s) 528
BpuEI CTTGAG 1 cut(s) 97
BsaAI YACGTR 1 cut(s) 564
BsaI GGTCTC 2 cut(s) 153, 826
BsaJI CCNNGG 3 cut(s) 356, 656, 972
BsaWI WCCGGW 1 cut(s) 784
Bsc4I CCNNNNNNNGG 4 cut(s) 636, 647, 674, 1010
Bse118I RCCGGY 1 cut(s) 784
Bse1I ACTGG 4 cut(s) 77, 125, 641, 748
Bse3DI GCAATG 1 cut(s) 562
BseBI CCWGG 3 cut(s) 145, 576, 1011
BseDI CCNNGG 3 cut(s) 356, 656, 972
BseGI GGATG 1 cut(s) 298
BseLI CCNNNNNNNGG 4 cut(s) 636, 647, 674, 1010
BseMI GCAATG 1 cut(s) 562
BseMII CTCAG 2 cut(s) 26, 198
BseNI ACTGG 4 cut(s) 77, 125, 641, 748
BseXI GCAGC 4 cut(s) 30, 358, 673, 808
BsgI GTGCAG 1 cut(s) 37
BshFI GGCC 2 cut(s) 629, 640
BshTI ACCGGT 1 cut(s) 784
BsiHKAI GWGCWC 1 cut(s) 587
BsiHKCI CYCGRG 1 cut(s) 823
BsiSI CCGG 1 cut(s) 785
BslFI GGGAC 2 cut(s) 840, 863
BslI CCNNNNNNNGG 4 cut(s) 636, 647, 674, 1010
BsmAI GTCTC 4 cut(s) 153, 160, 172, 826
BsmBI CGTCTC 1 cut(s) 172
BsmFI GGGAC 2 cut(s) 840, 863
BsnI GGCC 2 cut(s) 629, 640
Bso31I GGTCTC 2 cut(s) 153, 826
BsoBI CYCGRG 1 cut(s) 823
Bsp1286I GDGCHC 1 cut(s) 587
Bsp143I GATC 3 cut(s) 319, 451, 541
BspACI CCGC 1 cut(s) 1019
BspANI GGCC 2 cut(s) 629, 640
BspCNI CTCAG 2 cut(s) 25, 199
BspLI GGNNCC 3 cut(s) 321, 543, 573
BspMAI CTGCAG 1 cut(s) 637
BspPI GGATC 4 cut(s) 314, 327, 536, 549
BspTNI GGTCTC 2 cut(s) 153, 826
BsrDI GCAATG 1 cut(s) 562
BsrFI RCCGGY 1 cut(s) 784
BsrI ACTGG 4 cut(s) 77, 125, 641, 748
BssAI RCCGGY 1 cut(s) 784
BssECI CCNNGG 3 cut(s) 356, 656, 972
BssMI GATC 3 cut(s) 319, 451, 541
BssT1I CCWWGG 3 cut(s) 356, 656, 972
Bst2UI CCWGG 3 cut(s) 145, 576, 1011
Bst6I CTCTTC 1 cut(s) 91
BstBAI YACGTR 1 cut(s) 564
BstC8I GCNNGC 1 cut(s) 918
BstDEI CTNAG 5 cut(s) 12, 159, 207, 503, 528
BstF5I GGATG 1 cut(s) 298
BstH2I RGCGCY 1 cut(s) 667
BstHHI GCGC 1 cut(s) 666
BstKTI GATC 3 cut(s) 322, 454, 544
BstMAI GTCTC 4 cut(s) 153, 160, 172, 826
BstMBI GATC 3 cut(s) 319, 451, 541
BstMWI GCNNNNNNNGC 1 cut(s) 1027
BstNI CCWGG 3 cut(s) 145, 576, 1011
BstSCI CCNGG 3 cut(s) 143, 574, 1009
BstSFI CTRYAG 1 cut(s) 633
BstV1I GCAGC 4 cut(s) 30, 358, 673, 808
BstV2I GAAGAC 1 cut(s) 473
BstX2I RGATCY 2 cut(s) 319, 541
BstYI RGATCY 2 cut(s) 319, 541
BsuRI GGCC 2 cut(s) 629, 640
BtrI CACGTC 2 cut(s) 182, 225
BtsCI GGATG 1 cut(s) 298
BtsI GCAGTG 2 cut(s) 454, 630
BtsIMutI CAGTG 5 cut(s) 20, 454, 630, 741, 756
Cac8I GCNNGC 1 cut(s) 918
CfoI GCGC 1 cut(s) 666
Cfr10I RCCGGY 1 cut(s) 784
Cfr13I GGNCC 2 cut(s) 638, 650
CsiI ACCWGGT 1 cut(s) 574
Csp6I GTAC 3 cut(s) 493, 995, 1016
CspAI ACCGGT 1 cut(s) 784
CspCI CAANNNNNGTGG 2 cut(s) 312, 347
CviAII CATG 2 cut(s) 36, 152
CviQI GTAC 3 cut(s) 493, 995, 1016
DdeI CTNAG 5 cut(s) 12, 159, 207, 503, 528
DpnI GATC 3 cut(s) 321, 453, 543
DpnII GATC 3 cut(s) 319, 451, 541
Eam1104I CTCTTC 1 cut(s) 91
EarI CTCTTC 1 cut(s) 91
Ecl136II GAGCTC 1 cut(s) 585
Eco130I CCWWGG 3 cut(s) 356, 656, 972
Eco24I GRGCYC 1 cut(s) 587
Eco31I GGTCTC 2 cut(s) 153, 826
Eco32I GATATC 1 cut(s) 680
Eco47I GGWCC 1 cut(s) 650
Eco53kI GAGCTC 1 cut(s) 585
Eco57I CTGAAG 1 cut(s) 957
Eco88I CYCGRG 1 cut(s) 823
EcoICRI GAGCTC 1 cut(s) 585
EcoO109I RGGNCCY 1 cut(s) 650
EcoRII CCWGG 3 cut(s) 143, 574, 1009
EcoRV GATATC 1 cut(s) 680
EcoT14I CCWWGG 3 cut(s) 356, 656, 972
EcoT38I GRGCYC 1 cut(s) 587
ErhI CCWWGG 3 cut(s) 356, 656, 972
Esp3I CGTCTC 1 cut(s) 172
FaeI CATG 2 cut(s) 39, 155
FaiI YATR 9 cut(s) 37, 153, 366, 720, 736, 738, 791, 808, 926
FalI AAGNNNNNCTT 2 cut(s) 900, 932
FaqI GGGAC 2 cut(s) 840, 863
FatI CATG 2 cut(s) 35, 151
FbaI TGATCA 1 cut(s) 451
Fnu4HI GCNGC 4 cut(s) 19, 372, 662, 797
FokI GGATG 1 cut(s) 305
FriOI GRGCYC 1 cut(s) 587
Fsp4HI GCNGC 4 cut(s) 19, 372, 662, 797
FspBI CTAG 6 cut(s) 228, 647, 683, 921, 998, 1022
GlaI GCGC 1 cut(s) 665
GluI GCNGC 4 cut(s) 19, 372, 662, 797
GsuI CTGGAG 1 cut(s) 60
HaeII RGCGCY 1 cut(s) 667
HaeIII GGCC 2 cut(s) 629, 640
HapII CCGG 1 cut(s) 785
HhaI GCGC 1 cut(s) 666
Hin1II CATG 2 cut(s) 39, 155
Hin6I GCGC 1 cut(s) 664
HinP1I GCGC 1 cut(s) 664
HindIII AAGCTT 1 cut(s) 854
HinfI GANTC 3 cut(s) 351, 709, 950
HpaII CCGG 1 cut(s) 785
Hpy166II GTNNAC 2 cut(s) 172, 1016
Hpy188I TCNGA 5 cut(s) 208, 238, 487, 582, 937
Hpy188III TCNNGA 4 cut(s) 413, 569, 825, 860
Hpy8I GTNNAC 2 cut(s) 172, 1016
HpyAV CCTTC 2 cut(s) 751, 932
HpyCH4IV ACGT 5 cut(s) 168, 181, 224, 470, 563
HpyCH4V TGCA 5 cut(s) 18, 635, 839, 851, 989
HpyF10VI GCNNNNNNNGC 1 cut(s) 1027
HpyF3I CTNAG 5 cut(s) 12, 159, 207, 503, 528
HpySE526I ACGT 5 cut(s) 168, 181, 224, 470, 563
Hsp92II CATG 2 cut(s) 39, 155
HspAI GCGC 1 cut(s) 664
Ksp22I TGATCA 1 cut(s) 451
Kzo9I GATC 3 cut(s) 319, 451, 541
LmnI GCTCC 1 cut(s) 590
Lsp1109I GCAGC 4 cut(s) 30, 358, 673, 808
LweI GCATC 4 cut(s) 358, 826, 853, 976
MabI ACCWGGT 1 cut(s) 574
MaeI CTAG 6 cut(s) 228, 647, 683, 921, 998, 1022
MaeII ACGT 5 cut(s) 168, 181, 224, 470, 563
MaeIII GTNAC 3 cut(s) 162, 220, 559
MalI GATC 3 cut(s) 321, 453, 543
MboI GATC 3 cut(s) 319, 451, 541
MboII GAAGA 6 cut(s) 17, 78, 400, 478, 794, 845
MflI RGATCY 2 cut(s) 319, 541
MhlI GDGCHC 1 cut(s) 587
MluCI AATT 5 cut(s) 105, 337, 391, 704, 977
MlyI GAGTC 1 cut(s) 703
MmeI TCCRAC 2 cut(s) 519, 879
MnlI CCTC 6 cut(s) 178, 202, 265, 372, 491, 663
MroXI GAANNNNTTC 1 cut(s) 392
MseI TTAA 1 cut(s) 473
MspI CCGG 1 cut(s) 785
MspR9I CCNGG 3 cut(s) 145, 576, 1011
MvaI CCWGG 3 cut(s) 145, 576, 1011
MwoI GCNNNNNNNGC 1 cut(s) 1027
NdeII GATC 3 cut(s) 319, 451, 541
NlaIII CATG 2 cut(s) 39, 155
NlaIV GGNNCC 3 cut(s) 321, 543, 573
NmuCI GTSAC 3 cut(s) 162, 220, 559
PcsI WCGNNNNNNNCGW 1 cut(s) 230
PdmI GAANNNNTTC 1 cut(s) 392
PfeI GAWTC 2 cut(s) 351, 950
PflFI GACNNNGTC 1 cut(s) 773
PflMI CCANNNNNTGG 1 cut(s) 1010
PinAI ACCGGT 1 cut(s) 784
PkrI GCNGC 4 cut(s) 20, 373, 663, 798
PleI GAGTC 1 cut(s) 703
PpsI GAGTC 1 cut(s) 703
Ppu21I YACGTR 1 cut(s) 564
PpuMI RGGWCCY 1 cut(s) 650
Psp124BI GAGCTC 1 cut(s) 587
Psp5II RGGWCCY 1 cut(s) 650
Psp6I CCWGG 3 cut(s) 143, 574, 1009
PspGI CCWGG 3 cut(s) 143, 574, 1009
PspN4I GGNNCC 3 cut(s) 321, 543, 573
PspPI GGNCC 2 cut(s) 638, 650
PspPPI RGGWCCY 1 cut(s) 650
PstI CTGCAG 1 cut(s) 637
PsuI RGATCY 2 cut(s) 319, 541
PsyI GACNNNGTC 1 cut(s) 773
RsaI GTAC 3 cut(s) 494, 996, 1017
RsaNI GTAC 3 cut(s) 493, 995, 1016
SacI GAGCTC 1 cut(s) 587
SaqAI TTAA 1 cut(s) 473
SatI GCNGC 4 cut(s) 19, 372, 662, 797
Sau3AI GATC 3 cut(s) 319, 451, 541
Sau96I GGNCC 2 cut(s) 638, 650
ScaI AGTACT 1 cut(s) 996
SchI GAGTC 1 cut(s) 703
ScrFI CCNGG 3 cut(s) 145, 576, 1011
SduI GDGCHC 1 cut(s) 587
SexAI ACCWGGT 1 cut(s) 574
SfaNI GCATC 4 cut(s) 358, 826, 853, 976
SfcI CTRYAG 1 cut(s) 633
SinI GGWCC 1 cut(s) 650
SmlI CTYRAG 1 cut(s) 112
SmoI CTYRAG 1 cut(s) 112
Sse9I AATT 5 cut(s) 105, 337, 391, 704, 977
SsiI CCGC 1 cut(s) 1019
SspMI CTAG 6 cut(s) 228, 647, 683, 921, 998, 1022
SstI GAGCTC 1 cut(s) 587
StyD4I CCNGG 3 cut(s) 143, 574, 1009
StyI CCWWGG 3 cut(s) 356, 656, 972
TaiI ACGT 5 cut(s) 171, 184, 227, 473, 566
TasI AATT 5 cut(s) 105, 337, 391, 704, 977
TatI WGTACW 1 cut(s) 994
TfiI GAWTC 2 cut(s) 351, 950
Tru1I TTAA 1 cut(s) 473
Tru9I TTAA 1 cut(s) 473
TscAI CASTG 5 cut(s) 20, 461, 637, 748, 756
TseFI GTSAC 3 cut(s) 162, 220, 559
TseI GCWGC 4 cut(s) 18, 371, 661, 796
Tsp45I GTSAC 3 cut(s) 162, 220, 559
TspDTI ATGAA 2 cut(s) 735, 862
TspGWI ACGGA 1 cut(s) 690
TspRI CASTG 5 cut(s) 20, 461, 637, 748, 756
Tth111I GACNNNGTC 1 cut(s) 773
Van91I CCANNNNNTGG 1 cut(s) 1010
VpaK11BI GGWCC 1 cut(s) 650
XapI RAATTY 2 cut(s) 105, 391
XmnI GAANNNNTTC 1 cut(s) 392
XspI CTAG 6 cut(s) 228, 647, 683, 921, 998, 1022
ZrmI AGTACT 1 cut(s) 996
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.