Rmu_sc0000051.1_g000014
ERF Family

Beta-lactamase superfamily domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000051.1
OG0014201
Physical Location & Seq
Forward (+)
52632 .. 55567
2936 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000051.1_g000014.1.cds

Sequence Viewer

Length: 1053 bp
atggctgttgctcagtgcagctctctgttcaaaccatgttcaaacaaaacacccttatctccttttgcaaactctcctattctttctactattagcatcactccaattagctcaggtttcaagccactgaggctttcaatgtccagttctcttctctctaactcacaaacttacaggagaggtaaggttgcttctgctttggtttctgaggaaaacgcaatcacctctagttcgtctgatgatactgatggcttcaaactcacttacttggagggaaatagttggttgtgggatgtgtgtggagtgaaaatattggtggatccaatcttggtgggtaatttggattttggaatcccctggctctatgatgctgccaagaggtttttgaagaatttccagctaagtgatgttccggaagttgattgcttactgattacacaaagtcttgacgatcactgccatttgaagacgttaaagcccctctccgaaaagtacccaactcttagagtaatagctacaccaaatgctaaggcattgttggatccccttttcagcaatgttacatatctcgaacctggcgagagctccacaattgaagcaagaaatggttctaaagtcaaagttcaggccactccaggtccagttctaggtcctccttggcagcgccctgaaaatgggtatctcgtcatttctccacaagagaaatttactctatactatgaaccccattgtgtatacaacactggttcactggggaaggaaagggctgacattgtcatcacaccagtcataaagcagcttctgccatattttactttggtctcgggacaagaagatgcagttcaacttgcaaagcttctgcatgccaagttcattgtcccaatgagaaatggggagttggagagcaaagggttgcttgccagtatagtccagtctgaaggaacaatagaatcattcaaggaacttctatcgaaggaattaccagatgcacaagtactagaaccaactcctggtgtaccgctagatgtgccaccactttcgatccttcaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lactamase_B_3

Protein Analysis

350

Amino Acids

38.26

Weight (kDa)

5.53

Isoelectric Point (pI)

38.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29700 AT1G29700
fragaria_vesca FvH4_4g27971
malus_domestica MD13G1045600.v1.1 MD16G1046900.v1.1
prunus_persica Prupe.1G306400_v2.0.a1
pyrus_communis pycom16g04120
rosa_chinensis RchiOBHm_Chr4g0435691
rosa_laevigata RLG00000006566
rosa_multiflora Rmu_sc0000051.1_g000014
rosa_roxburghii Rroxscaffold_5G00376900
rosa_rugosa Rorug04G0288600
rosa_samantha Rh4AG343200 Rh4BG351600 Rh4CG366200 Rh4DG345800
rosa_wichuraiana Rw4G029960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1010
AccI GTMKAC 1 cut(s) 735
AccIII TCCGGA 1 cut(s) 412
AciI CCGC 1 cut(s) 1019
AclWI GGATC 5 cut(s) 314, 327, 536, 549, 1036
AcsI RAATTY 2 cut(s) 391, 704
AcuI CTGAAG 1 cut(s) 957
AfaI GTAC 3 cut(s) 494, 996, 1017
AfiI CCNNNNNNNGG 3 cut(s) 647, 674, 1010
AjnI CCWGG 4 cut(s) 356, 574, 634, 1009
AluBI AGCT 7 cut(s) 21, 111, 400, 515, 585, 799, 856
AluI AGCT 7 cut(s) 21, 111, 400, 515, 585, 799, 856
Alw21I GWGCWC 1 cut(s) 587
Alw26I GTCTC 1 cut(s) 826
AlwI GGATC 5 cut(s) 314, 327, 536, 549, 1036
AlwNI CAGNNNCTG 1 cut(s) 802
Ama87I CYCGRG 1 cut(s) 823
Aor13HI TCCGGA 1 cut(s) 412
AoxI GGCC 1 cut(s) 627
ApeKI GCWGC 4 cut(s) 18, 371, 661, 796
ApoI RAATTY 2 cut(s) 391, 704
Asp700I GAANNNNTTC 2 cut(s) 392, 607
AspLEI GCGC 1 cut(s) 666
AspS9I GGNCC 2 cut(s) 638, 650
AsuHPI GGTGA 1 cut(s) 214
AvaI CYCGRG 1 cut(s) 823
AvaII GGWCC 2 cut(s) 638, 650
BamHI GGATCC 2 cut(s) 319, 541
BanII GRGCYC 1 cut(s) 587
BarI GAAGNNNNNNTAC 2 cut(s) 175, 207
BbsI GAAGAC 1 cut(s) 473
Bbv12I GWGCWC 1 cut(s) 587
BbvI GCAGC 4 cut(s) 30, 358, 673, 808
BccI CCATC 1 cut(s) 242
BciT130I CCWGG 4 cut(s) 358, 576, 636, 1011
BcoDI GTCTC 1 cut(s) 826
BfaI CTAG 4 cut(s) 228, 647, 998, 1022
BfoI RGCGCY 1 cut(s) 667
BglI GCCNNNNNGGC 1 cut(s) 130
BisI GCNGC 4 cut(s) 19, 372, 662, 797
BlsI GCNGC 4 cut(s) 20, 373, 663, 798
BmcAI AGTACT 1 cut(s) 996
Bme1390I CCNGG 4 cut(s) 358, 576, 636, 1011
Bme18I GGWCC 2 cut(s) 638, 650
BmeT110I CYCGRG 1 cut(s) 823
BmgT120I GGNCC 2 cut(s) 638, 650
BmiI GGNNCC 2 cut(s) 321, 543
BmrFI CCNGG 4 cut(s) 358, 576, 636, 1011
BmrI ACTGGG 1 cut(s) 761
BmsI GCATC 4 cut(s) 105, 358, 826, 976
BmuI ACTGGG 1 cut(s) 761
BpiI GAAGAC 1 cut(s) 473
BpmI CTGGAG 1 cut(s) 618
Bpu10I CCTNAGC 2 cut(s) 112, 528
BsaI GGTCTC 1 cut(s) 826
BsaJI CCNNGG 2 cut(s) 356, 656
BsaWI WCCGGW 1 cut(s) 412
Bsc4I CCNNNNNNNGG 3 cut(s) 647, 674, 1010
Bse1I ACTGG 7 cut(s) 144, 641, 748, 756, 785, 921, 931
Bse3DI GCAATG 1 cut(s) 562
BseAI TCCGGA 1 cut(s) 412
BseBI CCWGG 4 cut(s) 358, 576, 636, 1011
BseDI CCNNGG 2 cut(s) 356, 656
BseGI GGATG 1 cut(s) 298
BseLI CCNNNNNNNGG 3 cut(s) 647, 674, 1010
BseMI GCAATG 1 cut(s) 562
BseMII CTCAG 4 cut(s) 26, 119, 126, 198
BseNI ACTGG 7 cut(s) 144, 641, 748, 756, 785, 921, 931
BseXI GCAGC 4 cut(s) 30, 358, 673, 808
BsgI GTGCAG 1 cut(s) 37
BshFI GGCC 1 cut(s) 629
BsiHKAI GWGCWC 1 cut(s) 587
BsiHKCI CYCGRG 1 cut(s) 823
BsiSI CCGG 1 cut(s) 413
BslFI GGGAC 2 cut(s) 840, 863
BslI CCNNNNNNNGG 3 cut(s) 647, 674, 1010
BsmAI GTCTC 1 cut(s) 826
BsmFI GGGAC 2 cut(s) 840, 863
BsnI GGCC 1 cut(s) 629
Bso31I GGTCTC 1 cut(s) 826
BsoBI CYCGRG 1 cut(s) 823
Bsp1286I GDGCHC 1 cut(s) 587
Bsp13I TCCGGA 1 cut(s) 412
Bsp143I GATC 4 cut(s) 319, 451, 541, 1041
BspACI CCGC 1 cut(s) 1019
BspANI GGCC 1 cut(s) 629
BspCNI CTCAG 4 cut(s) 25, 120, 125, 199
BspEI TCCGGA 1 cut(s) 412
BspLI GGNNCC 2 cut(s) 321, 543
BspPI GGATC 5 cut(s) 314, 327, 536, 549, 1036
BspTNI GGTCTC 1 cut(s) 826
BsrDI GCAATG 1 cut(s) 562
BsrI ACTGG 7 cut(s) 144, 641, 748, 756, 785, 921, 931
BssECI CCNNGG 2 cut(s) 356, 656
BssMI GATC 4 cut(s) 319, 451, 541, 1041
BssNAI GTATAC 1 cut(s) 736
BssT1I CCWWGG 1 cut(s) 656
Bst1107I GTATAC 1 cut(s) 736
Bst2UI CCWGG 4 cut(s) 358, 576, 636, 1011
Bst6I CTCTTC 1 cut(s) 156
BstAPI GCANNNNNTGC 1 cut(s) 802
BstC8I GCNNGC 2 cut(s) 864, 918
BstDEI CTNAG 7 cut(s) 12, 112, 128, 207, 401, 503, 528
BstF5I GGATG 1 cut(s) 298
BstH2I RGCGCY 1 cut(s) 667
BstHHI GCGC 1 cut(s) 666
BstKTI GATC 4 cut(s) 322, 454, 544, 1044
BstMAI GTCTC 1 cut(s) 826
BstMBI GATC 4 cut(s) 319, 451, 541, 1041
BstMWI GCNNNNNNNGC 3 cut(s) 130, 802, 1027
BstNI CCWGG 4 cut(s) 358, 576, 636, 1011
BstNSI RCATGY 1 cut(s) 866
BstSCI CCNGG 4 cut(s) 356, 574, 634, 1009
BstV1I GCAGC 4 cut(s) 30, 358, 673, 808
BstV2I GAAGAC 1 cut(s) 473
BstX2I RGATCY 2 cut(s) 319, 541
BstYI RGATCY 2 cut(s) 319, 541
BstZ17I GTATAC 1 cut(s) 736
BsuRI GGCC 1 cut(s) 629
BtsCI GGATG 1 cut(s) 298
BtsI GCAGTG 1 cut(s) 454
BtsIMutI CAGTG 5 cut(s) 20, 125, 454, 741, 749
Cac8I GCNNGC 2 cut(s) 864, 918
CaiI CAGNNNCTG 1 cut(s) 802
CfoI GCGC 1 cut(s) 666
Cfr13I GGNCC 2 cut(s) 638, 650
Csp6I GTAC 3 cut(s) 493, 995, 1016
CspCI CAANNNNNGTGG 2 cut(s) 312, 347
CviAII CATG 2 cut(s) 36, 863
CviQI GTAC 3 cut(s) 493, 995, 1016
DdeI CTNAG 7 cut(s) 12, 112, 128, 207, 401, 503, 528
DpnI GATC 4 cut(s) 321, 453, 543, 1043
DpnII GATC 4 cut(s) 319, 451, 541, 1041
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
Ecl136II GAGCTC 1 cut(s) 585
Eco130I CCWWGG 1 cut(s) 656
Eco24I GRGCYC 1 cut(s) 587
Eco31I GGTCTC 1 cut(s) 826
Eco47I GGWCC 2 cut(s) 638, 650
Eco53kI GAGCTC 1 cut(s) 585
Eco57I CTGAAG 1 cut(s) 957
Eco88I CYCGRG 1 cut(s) 823
EcoICRI GAGCTC 1 cut(s) 585
EcoO109I RGGNCCY 1 cut(s) 650
EcoRII CCWGG 4 cut(s) 356, 574, 634, 1009
EcoT14I CCWWGG 1 cut(s) 656
EcoT38I GRGCYC 1 cut(s) 587
ErhI CCWWGG 1 cut(s) 656
FaeI CATG 2 cut(s) 39, 866
FalI AAGNNNNNCTT 2 cut(s) 900, 932
FaqI GGGAC 2 cut(s) 840, 863
FatI CATG 2 cut(s) 35, 862
FblI GTMKAC 1 cut(s) 735
Fnu4HI GCNGC 4 cut(s) 19, 372, 662, 797
FokI GGATG 1 cut(s) 305
FriOI GRGCYC 1 cut(s) 587
Fsp4HI GCNGC 4 cut(s) 19, 372, 662, 797
FspBI CTAG 4 cut(s) 228, 647, 998, 1022
GlaI GCGC 1 cut(s) 665
GluI GCNGC 4 cut(s) 19, 372, 662, 797
GsuI CTGGAG 1 cut(s) 618
HaeII RGCGCY 1 cut(s) 667
HaeIII GGCC 1 cut(s) 629
HapII CCGG 1 cut(s) 413
HhaI GCGC 1 cut(s) 666
Hin1II CATG 2 cut(s) 39, 866
Hin6I GCGC 1 cut(s) 664
HinP1I GCGC 1 cut(s) 664
HindIII AAGCTT 1 cut(s) 854
HinfI GANTC 2 cut(s) 351, 950
HpaII CCGG 1 cut(s) 413
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 3 cut(s) 736, 749, 1016
Hpy188I TCNGA 4 cut(s) 208, 238, 487, 937
Hpy188III TCNNGA 4 cut(s) 413, 446, 569, 825
Hpy8I GTNNAC 3 cut(s) 736, 749, 1016
HpyAV CCTTC 3 cut(s) 751, 932, 967
HpyCH4IV ACGT 1 cut(s) 470
HpyCH4V TGCA 6 cut(s) 18, 68, 839, 851, 862, 989
HpyF10VI GCNNNNNNNGC 3 cut(s) 130, 802, 1027
HpyF3I CTNAG 7 cut(s) 12, 112, 128, 207, 401, 503, 528
HpySE526I ACGT 1 cut(s) 470
Hsp92II CATG 2 cut(s) 39, 866
HspAI GCGC 1 cut(s) 664
Kpn2I TCCGGA 1 cut(s) 412
Kzo9I GATC 4 cut(s) 319, 451, 541, 1041
LmnI GCTCC 1 cut(s) 590
Lsp1109I GCAGC 4 cut(s) 30, 358, 673, 808
LweI GCATC 4 cut(s) 105, 358, 826, 976
MaeI CTAG 4 cut(s) 228, 647, 998, 1022
MaeII ACGT 1 cut(s) 470
MaeIII GTNAC 1 cut(s) 559
MalI GATC 4 cut(s) 321, 453, 543, 1043
MboI GATC 4 cut(s) 319, 451, 541, 1041
MboII GAAGA 4 cut(s) 143, 400, 478, 845
MfeI CAATTG 1 cut(s) 591
MflI RGATCY 2 cut(s) 319, 541
MhlI GDGCHC 1 cut(s) 587
MluCI AATT 6 cut(s) 105, 337, 391, 591, 704, 977
MmeI TCCRAC 2 cut(s) 519, 879
MnlI CCTC 8 cut(s) 123, 173, 202, 235, 265, 372, 491, 663
MroI TCCGGA 1 cut(s) 412
MroXI GAANNNNTTC 2 cut(s) 392, 607
MseI TTAA 1 cut(s) 473
MspI CCGG 1 cut(s) 413
MspR9I CCNGG 4 cut(s) 358, 576, 636, 1011
MunI CAATTG 1 cut(s) 591
MvaI CCWGG 4 cut(s) 358, 576, 636, 1011
MwoI GCNNNNNNNGC 3 cut(s) 130, 802, 1027
NdeII GATC 4 cut(s) 319, 451, 541, 1041
NlaIII CATG 2 cut(s) 39, 866
NlaIV GGNNCC 2 cut(s) 321, 543
NspI RCATGY 1 cut(s) 866
PaeI GCATGC 1 cut(s) 866
PcsI WCGNNNNNNNCGW 1 cut(s) 576
PdmI GAANNNNTTC 2 cut(s) 392, 607
PfeI GAWTC 2 cut(s) 351, 950
PflFI GACNNNGTC 1 cut(s) 773
PflMI CCANNNNNTGG 1 cut(s) 1010
PkrI GCNGC 4 cut(s) 20, 373, 663, 798
PpuMI RGGWCCY 1 cut(s) 650
Psp124BI GAGCTC 1 cut(s) 587
Psp5II RGGWCCY 1 cut(s) 650
Psp6I CCWGG 4 cut(s) 356, 574, 634, 1009
PspGI CCWGG 4 cut(s) 356, 574, 634, 1009
PspN4I GGNNCC 2 cut(s) 321, 543
PspPI GGNCC 2 cut(s) 638, 650
PspPPI RGGWCCY 1 cut(s) 650
PstNI CAGNNNCTG 1 cut(s) 802
PsuI RGATCY 2 cut(s) 319, 541
PsyI GACNNNGTC 1 cut(s) 773
RsaI GTAC 3 cut(s) 494, 996, 1017
RsaNI GTAC 3 cut(s) 493, 995, 1016
SacI GAGCTC 1 cut(s) 587
SaqAI TTAA 1 cut(s) 473
SatI GCNGC 4 cut(s) 19, 372, 662, 797
Sau3AI GATC 4 cut(s) 319, 451, 541, 1041
Sau96I GGNCC 2 cut(s) 638, 650
ScaI AGTACT 1 cut(s) 996
ScrFI CCNGG 4 cut(s) 358, 576, 636, 1011
SduI GDGCHC 1 cut(s) 587
SfaNI GCATC 4 cut(s) 105, 358, 826, 976
SinI GGWCC 2 cut(s) 638, 650
SphI GCATGC 1 cut(s) 866
Sse9I AATT 6 cut(s) 105, 337, 391, 591, 704, 977
SsiI CCGC 1 cut(s) 1019
SspI AATATT 1 cut(s) 312
SspMI CTAG 4 cut(s) 228, 647, 998, 1022
SstI GAGCTC 1 cut(s) 587
StyD4I CCNGG 4 cut(s) 356, 574, 634, 1009
StyI CCWWGG 1 cut(s) 656
TaiI ACGT 1 cut(s) 473
TaqI TCGA 3 cut(s) 570, 971, 1040
TasI AATT 6 cut(s) 105, 337, 391, 591, 704, 977
TatI WGTACW 1 cut(s) 994
TfiI GAWTC 2 cut(s) 351, 950
Tru1I TTAA 1 cut(s) 473
Tru9I TTAA 1 cut(s) 473
TscAI CASTG 5 cut(s) 20, 132, 461, 748, 756
TseI GCWGC 4 cut(s) 18, 371, 661, 796
TspDTI ATGAA 2 cut(s) 735, 862
TspRI CASTG 5 cut(s) 20, 132, 461, 748, 756
Tth111I GACNNNGTC 1 cut(s) 773
Van91I CCANNNNNTGG 1 cut(s) 1010
VpaK11BI GGWCC 2 cut(s) 638, 650
XapI RAATTY 2 cut(s) 391, 704
XceI RCATGY 1 cut(s) 866
XmiI GTMKAC 1 cut(s) 735
XmnI GAANNNNTTC 2 cut(s) 392, 607
XspI CTAG 4 cut(s) 228, 647, 998, 1022
ZrmI AGTACT 1 cut(s) 996
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.