MD16G1046900.v1.1
ERF Family

Beta-lactamase superfamily domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0014201
Physical Location & Seq
Forward (+)
3261159 .. 3263912
2754 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1046900.v1.1.491

Sequence Viewer

Length: 1032 bp
ATGGCAGCCGCCGCTCAGGGCAGCTCTCTTCTCTGCTCCTGCCGCAGCAGACCATGCACAACCAGAACAACCCTATCCCCTTTCGGTCCCTATCCCTTTCTCTCTCCTCTCACCCCCATTGGCGCAAGCTCCAAACAGTTGAAGCTTTCGAATTCCAGGACTGGTAGGGTTGTTTCTGCTGTGGTTTCTGAGGAGAACGCAATTCAATCAAGTTTCTCTGGCACCGATGGGTTCAAGCTCACTTATTTGGAGGGGAATAGTTGGTTGTGGGATGTGGGTGGGGTGAAAATACTGGTGGATCCAATCTTGGTGGGTAATTTGGATTTTGGAATCCCCTGGCTTTATGATGCTGCGAAGAAGTTTTTGAAGAATTTCCAGTTAAGTGATATTCCAGAAGTTGATTGCTTGCTTATTACACAAAGTCTTGATGATCACTGCCATTTGAAGACATTAAAGCCCCTCTCCGAAAAGTACCCGAATCTTAGAGTAATAGCTACACCAAATGCTAAGGCCTTGTTGGATCCCCTTTTCAGCAATGTCACATATCTAGAACCTGGCCAGAGCTCCATTATTGAAGCAGGAAATGGTTCTACAGTCAAAGTTCAGGCCACTGCAGGGCCAGTTCTAGGTCCTCCTTGGCAGCGCCCCGAAAATGGATATCTTGTCATTTATCCAGAAGGGAAATCTACACTTTACTATGAACCCCATTGTGTATACAATACAAGTTCACTCGAGAAGGAAAGAGCTAACATTATTATCACACCGGTCATAAAGCAGCTTCTGCCTAAATTTACCTTGGTCTCTGGACAAGAAGATGCAGTTCGACTTGCAAAGCTGCTGAATGCCAAGTTCATTGTCCCGATGACAAATGGGGACTTGGATGCCAAGGGGCTTCTTGCTAGTTTAGTTTCGGCTGAAGGAACAATCGAATCATTCAAGGAACTTTTGTCCAAGGAATTACCAGATGCACAGGTACTGCAGCCTACTCCTGGTGTGCCGCTAGAAATCCCGCTACCTCCAAATCTTCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lactamase_B_3

Protein Analysis

344

Amino Acids

37.12

Weight (kDa)

6.01

Isoelectric Point (pI)

39.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lactamase_B_3 PF13483 79 - 288 5.6e-31 Beta-lactamase superfamily domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29700 AT1G29700
fragaria_vesca FvH4_4g27971
malus_domestica MD13G1045600.v1.1 MD16G1046900.v1.1
prunus_persica Prupe.1G306400_v2.0.a1
pyrus_communis pycom16g04120
rosa_chinensis RchiOBHm_Chr4g0435691
rosa_laevigata RLG00000006566
rosa_multiflora Rmu_sc0000051.1_g000014
rosa_roxburghii Rroxscaffold_5G00376900
rosa_rugosa Rorug04G0288600
rosa_samantha Rh4AG343200 Rh4BG351600 Rh4CG366200 Rh4DG345800
rosa_wichuraiana Rw4G029960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 221
AccBSI CCGCTC 1 cut(s) 14
AccI GTMKAC 1 cut(s) 714
AciI CCGC 5 cut(s) 9, 12, 43, 998, 1010
AclWI GGATC 4 cut(s) 293, 306, 515, 528
AcoI YGGCCR 1 cut(s) 556
AcsI RAATTY 3 cut(s) 151, 370, 788
AcuI CTGAAG 1 cut(s) 936
AfaI GTAC 2 cut(s) 473, 975
AfiI CCNNNNNNNGG 4 cut(s) 615, 626, 653, 989
AgeI ACCGGT 1 cut(s) 763
AgsI TTSAA 7 cut(s) 142, 206, 235, 367, 445, 575, 937
AjnI CCWGG 4 cut(s) 155, 335, 553, 988
AluBI AGCT 9 cut(s) 24, 129, 145, 238, 494, 564, 746, 778, 835
AluI AGCT 9 cut(s) 24, 129, 145, 238, 494, 564, 746, 778, 835
Alw21I GWGCWC 1 cut(s) 566
Alw26I GTCTC 1 cut(s) 805
AlwI GGATC 4 cut(s) 293, 306, 515, 528
AlwNI CAGNNNCTG 2 cut(s) 781, 976
Ama87I CYCGRG 1 cut(s) 731
AoxI GGCC 4 cut(s) 510, 556, 606, 617
ApeKI GCWGC 8 cut(s) 5, 21, 45, 350, 640, 775, 835, 979
ApoI RAATTY 3 cut(s) 151, 370, 788
AsiGI ACCGGT 1 cut(s) 763
Asp700I GAANNNNTTC 2 cut(s) 371, 586
AspLEI GCGC 2 cut(s) 125, 645
AspS9I GGNCC 3 cut(s) 86, 617, 629
AsuHPI GGTGA 2 cut(s) 103, 295
AsuII TTCGAA 1 cut(s) 149
AvaI CYCGRG 1 cut(s) 731
AvaII GGWCC 2 cut(s) 86, 629
BalI TGGCCA 1 cut(s) 558
BamHI GGATCC 2 cut(s) 298, 520
BanI GGYRCC 1 cut(s) 221
BanII GRGCYC 1 cut(s) 566
BbsI GAAGAC 1 cut(s) 452
Bbv12I GWGCWC 1 cut(s) 566
BbvI GCAGC 8 cut(s) 17, 33, 57, 337, 652, 787, 822, 991
BccI CCATC 1 cut(s) 221
BciT130I CCWGG 4 cut(s) 157, 337, 555, 990
BclI TGATCA 1 cut(s) 430
BcoDI GTCTC 1 cut(s) 805
BfaI CTAG 4 cut(s) 548, 626, 900, 1001
BfmI CTRYAG 3 cut(s) 591, 612, 977
BfoI RGCGCY 1 cut(s) 646
Bme1390I CCNGG 4 cut(s) 157, 337, 555, 990
Bme18I GGWCC 2 cut(s) 86, 629
BmeT110I CYCGRG 1 cut(s) 731
BmgT120I GGNCC 3 cut(s) 86, 617, 629
BmiI GGNNCC 4 cut(s) 88, 223, 300, 522
BmrFI CCNGG 4 cut(s) 157, 337, 555, 990
BmsI GCATC 4 cut(s) 337, 805, 871, 955
BpiI GAAGAC 1 cut(s) 452
Bpu10I CCTNAGC 2 cut(s) 15, 507
Bpu14I TTCGAA 1 cut(s) 149
BsaI GGTCTC 1 cut(s) 805
BsaJI CCNNGG 5 cut(s) 335, 635, 795, 885, 951
BsaWI WCCGGW 1 cut(s) 763
Bsc4I CCNNNNNNNGG 4 cut(s) 615, 626, 653, 989
Bse118I RCCGGY 1 cut(s) 763
Bse1I ACTGG 4 cut(s) 166, 297, 376, 620
Bse3DI GCAATG 1 cut(s) 541
BseBI CCWGG 4 cut(s) 157, 337, 555, 990
BseDI CCNNGG 5 cut(s) 335, 635, 795, 885, 951
BseGI GGATG 2 cut(s) 277, 886
BseLI CCNNNNNNNGG 4 cut(s) 615, 626, 653, 989
BseMI GCAATG 1 cut(s) 541
BseMII CTCAG 2 cut(s) 29, 180
BseNI ACTGG 4 cut(s) 166, 297, 376, 620
BseRI GAGGAG 2 cut(s) 96, 206
BseXI GCAGC 8 cut(s) 17, 33, 57, 337, 652, 787, 822, 991
BshFI GGCC 4 cut(s) 512, 558, 608, 619
BshNI GGYRCC 1 cut(s) 221
BshTI ACCGGT 1 cut(s) 763
BsiHKAI GWGCWC 1 cut(s) 566
BsiHKCI CYCGRG 1 cut(s) 731
BsiSI CCGG 1 cut(s) 764
BslFI GGGAC 3 cut(s) 72, 842, 887
BslI CCNNNNNNNGG 4 cut(s) 615, 626, 653, 989
BsmAI GTCTC 1 cut(s) 805
BsmFI GGGAC 3 cut(s) 72, 842, 887
BsmI GAATGC 1 cut(s) 847
BsnI GGCC 4 cut(s) 512, 558, 608, 619
Bso31I GGTCTC 1 cut(s) 805
BsoBI CYCGRG 1 cut(s) 731
Bsp119I TTCGAA 1 cut(s) 149
Bsp1286I GDGCHC 1 cut(s) 566
Bsp143I GATC 3 cut(s) 298, 430, 520
BspACI CCGC 5 cut(s) 9, 12, 43, 998, 1010
BspANI GGCC 4 cut(s) 512, 558, 608, 619
BspCNI CTCAG 2 cut(s) 28, 181
BspLI GGNNCC 4 cut(s) 88, 223, 300, 522
BspMAI CTGCAG 2 cut(s) 616, 981
BspPI GGATC 4 cut(s) 293, 306, 515, 528
BspT104I TTCGAA 1 cut(s) 149
BspT107I GGYRCC 1 cut(s) 221
BspTNI GGTCTC 1 cut(s) 805
BsrBI CCGCTC 1 cut(s) 14
BsrDI GCAATG 1 cut(s) 541
BsrFI RCCGGY 1 cut(s) 763
BsrI ACTGG 4 cut(s) 166, 297, 376, 620
BssAI RCCGGY 1 cut(s) 763
BssECI CCNNGG 5 cut(s) 335, 635, 795, 885, 951
BssMI GATC 3 cut(s) 298, 430, 520
BssNAI GTATAC 1 cut(s) 715
BssT1I CCWWGG 4 cut(s) 635, 795, 885, 951
Bst1107I GTATAC 1 cut(s) 715
Bst2UI CCWGG 4 cut(s) 157, 337, 555, 990
Bst4CI ACNGT 2 cut(s) 138, 595
Bst6I CTCTTC 1 cut(s) 33
BstAPI GCANNNNNTGC 2 cut(s) 54, 781
BstBI TTCGAA 1 cut(s) 149
BstC8I GCNNGC 2 cut(s) 127, 407
BstDEI CTNAG 4 cut(s) 15, 189, 482, 507
BstF5I GGATG 2 cut(s) 277, 886
BstH2I RGCGCY 1 cut(s) 646
BstHHI GCGC 2 cut(s) 125, 645
BstKTI GATC 3 cut(s) 301, 433, 523
BstMAI GTCTC 1 cut(s) 805
BstMBI GATC 3 cut(s) 298, 430, 520
BstMWI GCNNNNNNNGC 4 cut(s) 11, 42, 54, 781
BstNI CCWGG 4 cut(s) 157, 337, 555, 990
BstSCI CCNGG 4 cut(s) 155, 335, 553, 988
BstSFI CTRYAG 3 cut(s) 591, 612, 977
BstV1I GCAGC 8 cut(s) 17, 33, 57, 337, 652, 787, 822, 991
BstV2I GAAGAC 1 cut(s) 452
BstX2I RGATCY 2 cut(s) 298, 520
BstYI RGATCY 2 cut(s) 298, 520
BstZ17I GTATAC 1 cut(s) 715
BsuRI GGCC 4 cut(s) 512, 558, 608, 619
BtsCI GGATG 2 cut(s) 277, 886
BtsI GCAGTG 2 cut(s) 433, 609
BtsIMutI CAGTG 2 cut(s) 433, 609
Cac8I GCNNGC 2 cut(s) 127, 407
CaiI CAGNNNCTG 2 cut(s) 781, 976
CfoI GCGC 2 cut(s) 125, 645
Cfr10I RCCGGY 1 cut(s) 763
Cfr13I GGNCC 3 cut(s) 86, 617, 629
Csp6I GTAC 2 cut(s) 472, 974
CspAI ACCGGT 1 cut(s) 763
CspCI CAANNNNNGTGG 2 cut(s) 291, 326
CviAII CATG 1 cut(s) 54
CviQI GTAC 2 cut(s) 472, 974
DdeI CTNAG 4 cut(s) 15, 189, 482, 507
DpnI GATC 3 cut(s) 300, 432, 522
DpnII GATC 3 cut(s) 298, 430, 520
EaeI YGGCCR 1 cut(s) 556
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Ecl136II GAGCTC 1 cut(s) 564
Eco130I CCWWGG 4 cut(s) 635, 795, 885, 951
Eco147I AGGCCT 1 cut(s) 512
Eco24I GRGCYC 1 cut(s) 566
Eco31I GGTCTC 1 cut(s) 805
Eco32I GATATC 1 cut(s) 659
Eco47I GGWCC 2 cut(s) 86, 629
Eco53kI GAGCTC 1 cut(s) 564
Eco57I CTGAAG 1 cut(s) 936
Eco88I CYCGRG 1 cut(s) 731
EcoICRI GAGCTC 1 cut(s) 564
EcoO109I RGGNCCY 1 cut(s) 629
EcoRI GAATTC 1 cut(s) 151
EcoRII CCWGG 4 cut(s) 155, 335, 553, 988
EcoRV GATATC 1 cut(s) 659
EcoT14I CCWWGG 4 cut(s) 635, 795, 885, 951
EcoT38I GRGCYC 1 cut(s) 566
ErhI CCWWGG 4 cut(s) 635, 795, 885, 951
FaeI CATG 1 cut(s) 57
FaiI YATR 6 cut(s) 55, 345, 544, 699, 715, 770
FaqI GGGAC 3 cut(s) 72, 842, 887
FatI CATG 1 cut(s) 53
FauI CCCGC 1 cut(s) 1017
FbaI TGATCA 1 cut(s) 430
FblI GTMKAC 1 cut(s) 714
FokI GGATG 2 cut(s) 284, 893
FriOI GRGCYC 1 cut(s) 566
FspBI CTAG 4 cut(s) 548, 626, 900, 1001
GlaI GCGC 2 cut(s) 124, 644
HaeII RGCGCY 1 cut(s) 646
HaeIII GGCC 4 cut(s) 512, 558, 608, 619
HapII CCGG 1 cut(s) 764
HhaI GCGC 2 cut(s) 125, 645
Hin1II CATG 1 cut(s) 57
Hin6I GCGC 2 cut(s) 123, 643
HinP1I GCGC 2 cut(s) 123, 643
HindIII AAGCTT 1 cut(s) 143
HinfI GANTC 3 cut(s) 330, 478, 929
HpaII CCGG 1 cut(s) 764
HphI GGTGA 2 cut(s) 103, 295
Hpy166II GTNNAC 2 cut(s) 715, 728
Hpy188I TCNGA 2 cut(s) 190, 466
Hpy188III TCNNGA 7 cut(s) 392, 425, 548, 674, 733, 804, 859
Hpy8I GTNNAC 2 cut(s) 715, 728
HpyAV CCTTC 3 cut(s) 671, 730, 911
HpyCH4III ACNGT 2 cut(s) 138, 595
HpyCH4V TGCA 6 cut(s) 57, 614, 818, 830, 968, 979
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 42, 54, 781
HpyF3I CTNAG 4 cut(s) 15, 189, 482, 507
Hsp92II CATG 1 cut(s) 57
HspAI GCGC 2 cut(s) 123, 643
Ksp22I TGATCA 1 cut(s) 430
Kzo9I GATC 3 cut(s) 298, 430, 520
LmnI GCTCC 3 cut(s) 41, 134, 569
Lsp1109I GCAGC 8 cut(s) 17, 33, 57, 337, 652, 787, 822, 991
LweI GCATC 4 cut(s) 337, 805, 871, 955
MaeI CTAG 4 cut(s) 548, 626, 900, 1001
MaeIII GTNAC 1 cut(s) 538
MalI GATC 3 cut(s) 300, 432, 522
MbiI CCGCTC 1 cut(s) 14
MboI GATC 3 cut(s) 298, 430, 520
MboII GAAGA 6 cut(s) 20, 367, 379, 457, 824, 1016
MflI RGATCY 2 cut(s) 298, 520
MhlI GDGCHC 1 cut(s) 566
MlsI TGGCCA 1 cut(s) 558
MluCI AATT 6 cut(s) 151, 201, 316, 370, 788, 956
MluNI TGGCCA 1 cut(s) 558
MmeI TCCRAC 1 cut(s) 498
MnlI CCTC 6 cut(s) 117, 184, 244, 470, 642, 1026
Mox20I TGGCCA 1 cut(s) 558
MroXI GAANNNNTTC 2 cut(s) 371, 586
MscI TGGCCA 1 cut(s) 558
MseI TTAA 2 cut(s) 380, 452
Msp20I TGGCCA 1 cut(s) 558
MspI CCGG 1 cut(s) 764
MspR9I CCNGG 4 cut(s) 157, 337, 555, 990
Mva1269I GAATGC 1 cut(s) 847
MvaI CCWGG 4 cut(s) 157, 337, 555, 990
MwoI GCNNNNNNNGC 4 cut(s) 11, 42, 54, 781
NdeII GATC 3 cut(s) 298, 430, 520
NlaIII CATG 1 cut(s) 57
NlaIV GGNNCC 4 cut(s) 88, 223, 300, 522
NmuCI GTSAC 1 cut(s) 538
NspV TTCGAA 1 cut(s) 149
PaeR7I CTCGAG 1 cut(s) 731
PceI AGGCCT 1 cut(s) 512
PctI GAATGC 1 cut(s) 847
PdmI GAANNNNTTC 2 cut(s) 371, 586
PfeI GAWTC 3 cut(s) 330, 478, 929
PfoI TCCNGGA 1 cut(s) 155
PinAI ACCGGT 1 cut(s) 763
PpuMI RGGWCCY 1 cut(s) 629
Psp124BI GAGCTC 1 cut(s) 566
Psp5II RGGWCCY 1 cut(s) 629
Psp6I CCWGG 4 cut(s) 155, 335, 553, 988
PspGI CCWGG 4 cut(s) 155, 335, 553, 988
PspN4I GGNNCC 4 cut(s) 88, 223, 300, 522
PspPI GGNCC 3 cut(s) 86, 617, 629
PspPPI RGGWCCY 1 cut(s) 629
PstI CTGCAG 2 cut(s) 616, 981
PstNI CAGNNNCTG 2 cut(s) 781, 976
PsuI RGATCY 2 cut(s) 298, 520
RsaI GTAC 2 cut(s) 473, 975
RsaNI GTAC 2 cut(s) 472, 974
SacI GAGCTC 1 cut(s) 566
SaqAI TTAA 2 cut(s) 380, 452
Sau3AI GATC 3 cut(s) 298, 430, 520
Sau96I GGNCC 3 cut(s) 86, 617, 629
ScrFI CCNGG 4 cut(s) 157, 337, 555, 990
SduI GDGCHC 1 cut(s) 566
SfaNI GCATC 4 cut(s) 337, 805, 871, 955
SfcI CTRYAG 3 cut(s) 591, 612, 977
Sfr274I CTCGAG 1 cut(s) 731
SfuI TTCGAA 1 cut(s) 149
SinI GGWCC 2 cut(s) 86, 629
SlaI CTCGAG 1 cut(s) 731
SmlI CTYRAG 1 cut(s) 731
SmoI CTYRAG 1 cut(s) 731
Sse9I AATT 6 cut(s) 151, 201, 316, 370, 788, 956
SseBI AGGCCT 1 cut(s) 512
SsiI CCGC 5 cut(s) 9, 12, 43, 998, 1010
SspMI CTAG 4 cut(s) 548, 626, 900, 1001
SstI GAGCTC 1 cut(s) 566
StuI AGGCCT 1 cut(s) 512
StyD4I CCNGG 4 cut(s) 155, 335, 553, 988
StyI CCWWGG 4 cut(s) 635, 795, 885, 951
TaaI ACNGT 2 cut(s) 138, 595
TaqI TCGA 4 cut(s) 149, 732, 823, 927
TaqII GACCGA 1 cut(s) 74
TasI AATT 6 cut(s) 151, 201, 316, 370, 788, 956
TauI GCSGC 4 cut(s) 11, 14, 45, 1000
TfiI GAWTC 3 cut(s) 330, 478, 929
Tru1I TTAA 2 cut(s) 380, 452
Tru9I TTAA 2 cut(s) 380, 452
TscAI CASTG 2 cut(s) 440, 616
TseFI GTSAC 1 cut(s) 538
TseI GCWGC 8 cut(s) 5, 21, 45, 350, 640, 775, 835, 979
Tsp45I GTSAC 1 cut(s) 538
TspDTI ATGAA 2 cut(s) 714, 841
TspGWI ACGGA 1 cut(s) 1017
TspRI CASTG 2 cut(s) 440, 616
VpaK11BI GGWCC 2 cut(s) 86, 629
XapI RAATTY 3 cut(s) 151, 370, 788
XbaI TCTAGA 1 cut(s) 547
XhoI CTCGAG 1 cut(s) 731
XmiI GTMKAC 1 cut(s) 714
XmnI GAANNNNTTC 2 cut(s) 371, 586
XspI CTAG 4 cut(s) 548, 626, 900, 1001
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.