Rh4AG343200
ERF Family

Beta-lactamase superfamily domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0014201
Physical Location & Seq
Forward (+)
65142917 .. 65145851
2935 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG343200.1

Sequence Viewer

Length: 1053 bp
ATGGCTGTTGCTCAGTGCAGCTCTCTTTTCAAACCATGTTCAAACAAAACACCCTTATCTCCTTTTGCAAACTCTCCTATTCTTTCTACTATTAGCATCACTCCAATTAGCTCAGGTTTCAAGCCACTGAGGCTTTCAATGTCCAGGTCTTTTCTCTCTAACTCACAAACTTACAGGAGAGGTAAGGTTGCTTCTGCTTTGGTTTCTGAGGAAAACGCAATCACCTCTAGTTCGTCTGATGATACTGATGGCTTCAAACTCACTTACTTGGAGGGAAATAGTTGGTTGTGGGATGTGTGTGGAGTGAAAATATTGGTGGATCCAATCTTGGTGGGTAATTTGGATTTTGGAATCCCCTGGCTCTATGATGCTGCCAAGAGGTTTTTGAAGAATTTCCAGCTAAGTGATGTTCCGGAAGTTGATTGCTTACTGATTACACAAAGTCTTGACGATCACTGCCATTTGAAGACGTTAAAGCCCCTCTCCGAAAAGTACCCAACTCTTAGAGTAATAGCTACACCAAATGCTAAGGCATTGTTGGATCCCCTTTTCAGCAATGTTACATATCTCGAACCTGGCGAGAGCTCCACAATTGAAGCAAGAAATGGTTCTGAAGTCAAAGTTCAGGCCACTCCAGGTCCAGTTCTAGGTCCTCCTTGGCAGCGCCCTGAAAATGGGTATCTCGTCATTTCTCCACAAGAGAAATTTACTCTATACTATGAACCCCATTGTGTATACAACACTGGTTCACTGGGGAAGGAAAGGGCTGACATTGTCATCACACCAGTCATAAAGCAGCTTCTGCCATATTTTACTTTGGTCTCGGGACAAGAAGATGCAGTTCAACTTGCAAAGCTTCTGCATGCCAAGTTCATTGTCCCAATGAGAAATGGGGAGTTGGAGAGCAAAGGGTTGCTTGCCAGTATAGTCCAGTCTGAAGGAACAATAGAATCATTCAAGGAACTTCTATCAAAGGAATTACCAGATGCACAAGTACTAGAACCAACTCCTGGTGTACCGCTAGATGTGCCACCACTTTCGATCCTTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lactamase_B_3

Protein Analysis

350

Amino Acids

38.36

Weight (kDa)

5.39

Isoelectric Point (pI)

39.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lactamase_B_3 PF13483 86 - 295 5.2e-32 Beta-lactamase superfamily domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29700 AT1G29700
fragaria_vesca FvH4_4g27971
malus_domestica MD13G1045600.v1.1 MD16G1046900.v1.1
prunus_persica Prupe.1G306400_v2.0.a1
pyrus_communis pycom16g04120
rosa_chinensis RchiOBHm_Chr4g0435691
rosa_laevigata RLG00000006566
rosa_multiflora Rmu_sc0000051.1_g000014
rosa_roxburghii Rroxscaffold_5G00376900
rosa_rugosa Rorug04G0288600
rosa_samantha Rh4AG343200 Rh4BG351600 Rh4CG366200 Rh4DG345800
rosa_wichuraiana Rw4G029960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1010
AccI GTMKAC 1 cut(s) 735
AccIII TCCGGA 1 cut(s) 412
AciI CCGC 1 cut(s) 1019
AclWI GGATC 5 cut(s) 314, 327, 536, 549, 1036
AcsI RAATTY 2 cut(s) 391, 704
AcuI CTGAAG 2 cut(s) 633, 957
AfaI GTAC 3 cut(s) 494, 996, 1017
AfiI CCNNNNNNNGG 3 cut(s) 647, 674, 1010
AjnI CCWGG 5 cut(s) 143, 356, 574, 634, 1009
AluBI AGCT 7 cut(s) 21, 111, 400, 515, 585, 799, 856
AluI AGCT 7 cut(s) 21, 111, 400, 515, 585, 799, 856
Alw21I GWGCWC 1 cut(s) 587
Alw26I GTCTC 1 cut(s) 826
AlwI GGATC 5 cut(s) 314, 327, 536, 549, 1036
AlwNI CAGNNNCTG 1 cut(s) 802
Ama87I CYCGRG 1 cut(s) 823
Aor13HI TCCGGA 1 cut(s) 412
AoxI GGCC 1 cut(s) 627
ApeKI GCWGC 4 cut(s) 18, 371, 661, 796
ApoI RAATTY 2 cut(s) 391, 704
Asp700I GAANNNNTTC 2 cut(s) 392, 607
AspLEI GCGC 1 cut(s) 666
AspS9I GGNCC 2 cut(s) 638, 650
AsuHPI GGTGA 1 cut(s) 214
AvaI CYCGRG 1 cut(s) 823
AvaII GGWCC 2 cut(s) 638, 650
BamHI GGATCC 2 cut(s) 319, 541
BanII GRGCYC 1 cut(s) 587
BarI GAAGNNNNNNTAC 2 cut(s) 175, 207
BbsI GAAGAC 1 cut(s) 473
Bbv12I GWGCWC 1 cut(s) 587
BbvI GCAGC 4 cut(s) 30, 358, 673, 808
BccI CCATC 1 cut(s) 242
BciT130I CCWGG 5 cut(s) 145, 358, 576, 636, 1011
BcoDI GTCTC 1 cut(s) 826
BfaI CTAG 4 cut(s) 228, 647, 998, 1022
BfoI RGCGCY 1 cut(s) 667
BglI GCCNNNNNGGC 1 cut(s) 130
BisI GCNGC 4 cut(s) 19, 372, 662, 797
BlsI GCNGC 4 cut(s) 20, 373, 663, 798
BmcAI AGTACT 1 cut(s) 996
Bme1390I CCNGG 5 cut(s) 145, 358, 576, 636, 1011
Bme18I GGWCC 2 cut(s) 638, 650
BmeT110I CYCGRG 1 cut(s) 823
BmgT120I GGNCC 2 cut(s) 638, 650
BmiI GGNNCC 2 cut(s) 321, 543
BmrFI CCNGG 5 cut(s) 145, 358, 576, 636, 1011
BmrI ACTGGG 1 cut(s) 761
BmsI GCATC 4 cut(s) 105, 358, 826, 976
BmuI ACTGGG 1 cut(s) 761
BpiI GAAGAC 1 cut(s) 473
BpmI CTGGAG 1 cut(s) 618
Bpu10I CCTNAGC 2 cut(s) 112, 528
BsaI GGTCTC 1 cut(s) 826
BsaJI CCNNGG 2 cut(s) 356, 656
BsaWI WCCGGW 1 cut(s) 412
Bsc4I CCNNNNNNNGG 3 cut(s) 647, 674, 1010
Bse1I ACTGG 6 cut(s) 641, 748, 756, 785, 921, 931
Bse3DI GCAATG 1 cut(s) 562
BseAI TCCGGA 1 cut(s) 412
BseBI CCWGG 5 cut(s) 145, 358, 576, 636, 1011
BseDI CCNNGG 2 cut(s) 356, 656
BseGI GGATG 1 cut(s) 298
BseLI CCNNNNNNNGG 3 cut(s) 647, 674, 1010
BseMI GCAATG 1 cut(s) 562
BseMII CTCAG 4 cut(s) 26, 119, 126, 198
BseNI ACTGG 6 cut(s) 641, 748, 756, 785, 921, 931
BseXI GCAGC 4 cut(s) 30, 358, 673, 808
BsgI GTGCAG 1 cut(s) 37
BshFI GGCC 1 cut(s) 629
BsiHKAI GWGCWC 1 cut(s) 587
BsiHKCI CYCGRG 1 cut(s) 823
BsiSI CCGG 1 cut(s) 413
BslFI GGGAC 2 cut(s) 840, 863
BslI CCNNNNNNNGG 3 cut(s) 647, 674, 1010
BsmAI GTCTC 1 cut(s) 826
BsmFI GGGAC 2 cut(s) 840, 863
BsnI GGCC 1 cut(s) 629
Bso31I GGTCTC 1 cut(s) 826
BsoBI CYCGRG 1 cut(s) 823
Bsp1286I GDGCHC 1 cut(s) 587
Bsp13I TCCGGA 1 cut(s) 412
Bsp143I GATC 4 cut(s) 319, 451, 541, 1041
BspACI CCGC 1 cut(s) 1019
BspANI GGCC 1 cut(s) 629
BspCNI CTCAG 4 cut(s) 25, 120, 125, 199
BspEI TCCGGA 1 cut(s) 412
BspLI GGNNCC 2 cut(s) 321, 543
BspPI GGATC 5 cut(s) 314, 327, 536, 549, 1036
BspTNI GGTCTC 1 cut(s) 826
BsrDI GCAATG 1 cut(s) 562
BsrI ACTGG 6 cut(s) 641, 748, 756, 785, 921, 931
BssECI CCNNGG 2 cut(s) 356, 656
BssMI GATC 4 cut(s) 319, 451, 541, 1041
BssNAI GTATAC 1 cut(s) 736
BssT1I CCWWGG 1 cut(s) 656
Bst1107I GTATAC 1 cut(s) 736
Bst2UI CCWGG 5 cut(s) 145, 358, 576, 636, 1011
BstAPI GCANNNNNTGC 1 cut(s) 802
BstC8I GCNNGC 2 cut(s) 864, 918
BstDEI CTNAG 7 cut(s) 12, 112, 128, 207, 401, 503, 528
BstF5I GGATG 1 cut(s) 298
BstH2I RGCGCY 1 cut(s) 667
BstHHI GCGC 1 cut(s) 666
BstKTI GATC 4 cut(s) 322, 454, 544, 1044
BstMAI GTCTC 1 cut(s) 826
BstMBI GATC 4 cut(s) 319, 451, 541, 1041
BstMWI GCNNNNNNNGC 3 cut(s) 130, 802, 1027
BstNI CCWGG 5 cut(s) 145, 358, 576, 636, 1011
BstNSI RCATGY 1 cut(s) 866
BstSCI CCNGG 5 cut(s) 143, 356, 574, 634, 1009
BstV1I GCAGC 4 cut(s) 30, 358, 673, 808
BstV2I GAAGAC 1 cut(s) 473
BstX2I RGATCY 2 cut(s) 319, 541
BstYI RGATCY 2 cut(s) 319, 541
BstZ17I GTATAC 1 cut(s) 736
BsuRI GGCC 1 cut(s) 629
BtsCI GGATG 1 cut(s) 298
BtsI GCAGTG 1 cut(s) 454
BtsIMutI CAGTG 5 cut(s) 20, 125, 454, 741, 749
Cac8I GCNNGC 2 cut(s) 864, 918
CaiI CAGNNNCTG 1 cut(s) 802
CfoI GCGC 1 cut(s) 666
Cfr13I GGNCC 2 cut(s) 638, 650
Csp6I GTAC 3 cut(s) 493, 995, 1016
CspCI CAANNNNNGTGG 2 cut(s) 312, 347
CviAII CATG 2 cut(s) 36, 863
CviQI GTAC 3 cut(s) 493, 995, 1016
DdeI CTNAG 7 cut(s) 12, 112, 128, 207, 401, 503, 528
DpnI GATC 4 cut(s) 321, 453, 543, 1043
DpnII GATC 4 cut(s) 319, 451, 541, 1041
Ecl136II GAGCTC 1 cut(s) 585
Eco130I CCWWGG 1 cut(s) 656
Eco24I GRGCYC 1 cut(s) 587
Eco31I GGTCTC 1 cut(s) 826
Eco47I GGWCC 2 cut(s) 638, 650
Eco53kI GAGCTC 1 cut(s) 585
Eco57I CTGAAG 2 cut(s) 633, 957
Eco88I CYCGRG 1 cut(s) 823
EcoICRI GAGCTC 1 cut(s) 585
EcoO109I RGGNCCY 1 cut(s) 650
EcoRII CCWGG 5 cut(s) 143, 356, 574, 634, 1009
EcoT14I CCWWGG 1 cut(s) 656
EcoT38I GRGCYC 1 cut(s) 587
ErhI CCWWGG 1 cut(s) 656
FaeI CATG 2 cut(s) 39, 866
FalI AAGNNNNNCTT 2 cut(s) 900, 932
FaqI GGGAC 2 cut(s) 840, 863
FatI CATG 2 cut(s) 35, 862
FblI GTMKAC 1 cut(s) 735
Fnu4HI GCNGC 4 cut(s) 19, 372, 662, 797
FokI GGATG 1 cut(s) 305
FriOI GRGCYC 1 cut(s) 587
Fsp4HI GCNGC 4 cut(s) 19, 372, 662, 797
FspBI CTAG 4 cut(s) 228, 647, 998, 1022
GlaI GCGC 1 cut(s) 665
GluI GCNGC 4 cut(s) 19, 372, 662, 797
GsuI CTGGAG 1 cut(s) 618
HaeII RGCGCY 1 cut(s) 667
HaeIII GGCC 1 cut(s) 629
HapII CCGG 1 cut(s) 413
HhaI GCGC 1 cut(s) 666
Hin1II CATG 2 cut(s) 39, 866
Hin6I GCGC 1 cut(s) 664
HinP1I GCGC 1 cut(s) 664
HindIII AAGCTT 1 cut(s) 854
HinfI GANTC 2 cut(s) 351, 950
HpaII CCGG 1 cut(s) 413
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 3 cut(s) 736, 749, 1016
Hpy188I TCNGA 5 cut(s) 208, 238, 487, 613, 937
Hpy188III TCNNGA 4 cut(s) 413, 446, 569, 825
Hpy8I GTNNAC 3 cut(s) 736, 749, 1016
HpyAV CCTTC 2 cut(s) 751, 932
HpyCH4IV ACGT 1 cut(s) 470
HpyCH4V TGCA 6 cut(s) 18, 68, 839, 851, 862, 989
HpyF10VI GCNNNNNNNGC 3 cut(s) 130, 802, 1027
HpyF3I CTNAG 7 cut(s) 12, 112, 128, 207, 401, 503, 528
HpySE526I ACGT 1 cut(s) 470
Hsp92II CATG 2 cut(s) 39, 866
HspAI GCGC 1 cut(s) 664
Kpn2I TCCGGA 1 cut(s) 412
Kzo9I GATC 4 cut(s) 319, 451, 541, 1041
LmnI GCTCC 1 cut(s) 590
Lsp1109I GCAGC 4 cut(s) 30, 358, 673, 808
LweI GCATC 4 cut(s) 105, 358, 826, 976
MaeI CTAG 4 cut(s) 228, 647, 998, 1022
MaeII ACGT 1 cut(s) 470
MaeIII GTNAC 1 cut(s) 559
MalI GATC 4 cut(s) 321, 453, 543, 1043
MboI GATC 4 cut(s) 319, 451, 541, 1041
MboII GAAGA 3 cut(s) 400, 478, 845
MfeI CAATTG 1 cut(s) 591
MflI RGATCY 2 cut(s) 319, 541
MhlI GDGCHC 1 cut(s) 587
MluCI AATT 6 cut(s) 105, 337, 391, 591, 704, 977
MmeI TCCRAC 2 cut(s) 519, 879
MnlI CCTC 8 cut(s) 123, 173, 202, 235, 265, 372, 491, 663
MroI TCCGGA 1 cut(s) 412
MroXI GAANNNNTTC 2 cut(s) 392, 607
MseI TTAA 1 cut(s) 473
MspI CCGG 1 cut(s) 413
MspR9I CCNGG 5 cut(s) 145, 358, 576, 636, 1011
MunI CAATTG 1 cut(s) 591
MvaI CCWGG 5 cut(s) 145, 358, 576, 636, 1011
MwoI GCNNNNNNNGC 3 cut(s) 130, 802, 1027
NdeII GATC 4 cut(s) 319, 451, 541, 1041
NlaIII CATG 2 cut(s) 39, 866
NlaIV GGNNCC 2 cut(s) 321, 543
NspI RCATGY 1 cut(s) 866
PaeI GCATGC 1 cut(s) 866
PcsI WCGNNNNNNNCGW 1 cut(s) 576
PdmI GAANNNNTTC 2 cut(s) 392, 607
PfeI GAWTC 2 cut(s) 351, 950
PflFI GACNNNGTC 1 cut(s) 773
PflMI CCANNNNNTGG 1 cut(s) 1010
PkrI GCNGC 4 cut(s) 20, 373, 663, 798
PpuMI RGGWCCY 1 cut(s) 650
Psp124BI GAGCTC 1 cut(s) 587
Psp5II RGGWCCY 1 cut(s) 650
Psp6I CCWGG 5 cut(s) 143, 356, 574, 634, 1009
PspGI CCWGG 5 cut(s) 143, 356, 574, 634, 1009
PspN4I GGNNCC 2 cut(s) 321, 543
PspPI GGNCC 2 cut(s) 638, 650
PspPPI RGGWCCY 1 cut(s) 650
PstNI CAGNNNCTG 1 cut(s) 802
PsuI RGATCY 2 cut(s) 319, 541
PsyI GACNNNGTC 1 cut(s) 773
RsaI GTAC 3 cut(s) 494, 996, 1017
RsaNI GTAC 3 cut(s) 493, 995, 1016
SacI GAGCTC 1 cut(s) 587
SaqAI TTAA 1 cut(s) 473
SatI GCNGC 4 cut(s) 19, 372, 662, 797
Sau3AI GATC 4 cut(s) 319, 451, 541, 1041
Sau96I GGNCC 2 cut(s) 638, 650
ScaI AGTACT 1 cut(s) 996
ScrFI CCNGG 5 cut(s) 145, 358, 576, 636, 1011
SduI GDGCHC 1 cut(s) 587
SfaNI GCATC 4 cut(s) 105, 358, 826, 976
SinI GGWCC 2 cut(s) 638, 650
SphI GCATGC 1 cut(s) 866
Sse9I AATT 6 cut(s) 105, 337, 391, 591, 704, 977
SsiI CCGC 1 cut(s) 1019
SspI AATATT 1 cut(s) 312
SspMI CTAG 4 cut(s) 228, 647, 998, 1022
SstI GAGCTC 1 cut(s) 587
StyD4I CCNGG 5 cut(s) 143, 356, 574, 634, 1009
StyI CCWWGG 1 cut(s) 656
TaiI ACGT 1 cut(s) 473
TaqI TCGA 2 cut(s) 570, 1040
TasI AATT 6 cut(s) 105, 337, 391, 591, 704, 977
TatI WGTACW 1 cut(s) 994
TfiI GAWTC 2 cut(s) 351, 950
Tru1I TTAA 1 cut(s) 473
Tru9I TTAA 1 cut(s) 473
TscAI CASTG 5 cut(s) 20, 132, 461, 748, 756
TseI GCWGC 4 cut(s) 18, 371, 661, 796
TspDTI ATGAA 2 cut(s) 735, 862
TspRI CASTG 5 cut(s) 20, 132, 461, 748, 756
Tth111I GACNNNGTC 1 cut(s) 773
Van91I CCANNNNNTGG 1 cut(s) 1010
VpaK11BI GGWCC 2 cut(s) 638, 650
XapI RAATTY 2 cut(s) 391, 704
XceI RCATGY 1 cut(s) 866
XmiI GTMKAC 1 cut(s) 735
XmnI GAANNNNTTC 2 cut(s) 392, 607
XspI CTAG 4 cut(s) 228, 647, 998, 1022
ZrmI AGTACT 1 cut(s) 996
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.