Prupe.1G306400_v2.0.a1
ERF Family

Beta-lactamase superfamily domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014201
Physical Location & Seq
Reverse (-)
29951145 .. 29953429
2285 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G306400.1

Sequence Viewer

Length: 1020 bp
ATGGCTGTTGGTCAGTGCAGCTCTCTTCTCTGGTCGTGCAGACCATGCACGCCGAGAATACCCTTATCCCCTGTCGCGCCCTCTCCCATTCTCTCGACTCCTAGCCCCACTCCCATTCGCGCAAGTTCCAAACAATTGAGGCTTTCAACGTCCAGGATTGGTAGGGTTGTTGCTGCTGTGGTTTCTGAGAAAAACGCAATTCAGTCGAGTTTCGCCGGCACTGATGGGTTCAAACTCACTTACTTGGAGGGGAATAGCTGGTTGTGGGATGTGGGTGGGTTGAAAATATTGGTCGATCCAATCTTGGTGGGTAATTTGGATTTTGGGATCCCCTGGCTTTATGATGCTGCCAAGAAGTTTTTGAAGAATTTCCAGCTAAGTGATCTTCCAGAAGTTGATTGTTTACTAATCACACAAAGCCTCGATGACCACTGCCATTTGAAGACTTTAAAGCCACTCTCTGAAAAGTACCTGAATCTTAGAGTAATAGCTACACCCAATGCTCAGACATTGTTGGATCCCCTTTTCAGCAATGTCACATATATGGAACCTGGTCAGAGCTCCGTAATTGAAGCAAGAAGTGGTTCTACAGTCAAAGTTCAGGCCACTGCAGGGCCTGTTCTTGGTCCTCCTTGGCAGCGCCCTGAAAATGGATATCTTGTCAGTTCTCCACAAGGGAAATTTACTCTTTACTATGAACCCCATTGTGTATACAACAAGAGTTCAGTGGAGAAGGAAAGGGCTGACATTGTCATCACGCCGGTCATAAAGCAGCTTCTGCCTAAATTTACTTTGGTGTCTGGACAAGAAGATGCAGTTGAACTTGCAAAGCTGCTGCATGCCAAGTTCATTGTCCCGATGACAAACGGAGACTTGGATAGCAAAGGGCTTCTTGCTAGTTTAGTTCAGGCTGAAGGAACAATAGAATCATTCAAGGAACTTTTGTCCAAGGAATTACCAGATGCGCAGGTACTGCAGCCTACTCCTGGTGTACCTCTAGAGATCCCGCCACTCCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lactamase_B_3

Protein Analysis

340

Amino Acids

36.89

Weight (kDa)

6.45

Isoelectric Point (pI)

45.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29700 AT1G29700
fragaria_vesca FvH4_4g27971
malus_domestica MD13G1045600.v1.1 MD16G1046900.v1.1
prunus_persica Prupe.1G306400_v2.0.a1
pyrus_communis pycom16g04120
rosa_chinensis RchiOBHm_Chr4g0435691
rosa_laevigata RLG00000006566
rosa_multiflora Rmu_sc0000051.1_g000014
rosa_roxburghii Rroxscaffold_5G00376900
rosa_rugosa Rorug04G0288600
rosa_samantha Rh4AG343200 Rh4BG351600 Rh4CG366200 Rh4DG345800
rosa_wichuraiana Rw4G029960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 966
Acc36I ACCTGC 1 cut(s) 958
AccI GTMKAC 1 cut(s) 711
AccII CGCG 2 cut(s) 77, 120
AciI CCGC 1 cut(s) 1007
AclWI GGATC 6 cut(s) 290, 322, 335, 512, 525, 997
AcsI RAATTY 3 cut(s) 367, 680, 785
AcuI CTGAAG 1 cut(s) 933
AfaI GTAC 3 cut(s) 470, 972, 993
AfiI CCNNNNNNNGG 4 cut(s) 612, 623, 650, 986
AgsI TTSAA 8 cut(s) 147, 232, 283, 364, 442, 572, 821, 934
AjnI CCWGG 4 cut(s) 152, 332, 550, 985
AluBI AGCT 7 cut(s) 21, 258, 376, 491, 561, 775, 832
AluI AGCT 7 cut(s) 21, 258, 376, 491, 561, 775, 832
Alw21I GWGCWC 1 cut(s) 563
Alw26I GTCTC 1 cut(s) 864
AlwI GGATC 6 cut(s) 290, 322, 335, 512, 525, 997
AlwNI CAGNNNCTG 3 cut(s) 617, 778, 973
AoxI GGCC 2 cut(s) 603, 614
ApeKI GCWGC 8 cut(s) 18, 173, 347, 637, 772, 832, 835, 976
ApoI RAATTY 3 cut(s) 367, 680, 785
Asp700I GAANNNNTTC 2 cut(s) 368, 583
AspLEI GCGC 4 cut(s) 79, 122, 642, 967
AspS9I GGNCC 2 cut(s) 614, 626
AvaII GGWCC 1 cut(s) 626
BamHI GGATCC 2 cut(s) 327, 517
BanII GRGCYC 1 cut(s) 563
BarI GAAGNNNNNNTAC 2 cut(s) 571, 603
BbsI GAAGAC 1 cut(s) 449
Bbv12I GWGCWC 1 cut(s) 563
BbvI GCAGC 8 cut(s) 30, 160, 334, 649, 784, 819, 822, 988
BccI CCATC 1 cut(s) 218
BcgI CGANNNNNNTGC 2 cut(s) 186, 220
BciT130I CCWGG 4 cut(s) 154, 334, 552, 987
BcoDI GTCTC 1 cut(s) 864
BfaI CTAG 3 cut(s) 102, 897, 998
BfmI CTRYAG 3 cut(s) 588, 609, 974
BfoI RGCGCY 1 cut(s) 643
BfuAI ACCTGC 1 cut(s) 958
BisI GCNGC 8 cut(s) 19, 174, 348, 638, 773, 833, 836, 977
BlsI GCNGC 8 cut(s) 20, 175, 349, 639, 774, 834, 837, 978
Bme1390I CCNGG 4 cut(s) 154, 334, 552, 987
Bme18I GGWCC 1 cut(s) 626
BmgT120I GGNCC 2 cut(s) 614, 626
BmiI GGNNCC 3 cut(s) 329, 519, 549
BmrFI CCNGG 4 cut(s) 154, 334, 552, 987
BmsI GCATC 3 cut(s) 334, 802, 952
BpiI GAAGAC 1 cut(s) 449
BsaJI CCNNGG 3 cut(s) 332, 632, 948
Bsc4I CCNNNNNNNGG 4 cut(s) 612, 623, 650, 986
Bse118I RCCGGY 2 cut(s) 215, 760
Bse3DI GCAATG 1 cut(s) 538
BseBI CCWGG 4 cut(s) 154, 334, 552, 987
BseDI CCNNGG 3 cut(s) 332, 632, 948
BseGI GGATG 1 cut(s) 274
BseLI CCNNNNNNNGG 4 cut(s) 612, 623, 650, 986
BseMI GCAATG 1 cut(s) 538
BseMII CTCAG 2 cut(s) 177, 518
BseXI GCAGC 8 cut(s) 30, 160, 334, 649, 784, 819, 822, 988
BsgI GTGCAG 2 cut(s) 37, 58
Bsh1236I CGCG 2 cut(s) 77, 120
BshFI GGCC 2 cut(s) 605, 616
BsiHKAI GWGCWC 1 cut(s) 563
BsiSI CCGG 2 cut(s) 216, 761
BslFI GGGAC 1 cut(s) 839
BslI CCNNNNNNNGG 4 cut(s) 612, 623, 650, 986
BsmAI GTCTC 1 cut(s) 864
BsmFI GGGAC 1 cut(s) 839
BsnI GGCC 2 cut(s) 605, 616
Bsp1286I GDGCHC 1 cut(s) 563
Bsp143I GATC 5 cut(s) 295, 327, 382, 517, 1002
BspACI CCGC 1 cut(s) 1007
BspANI GGCC 2 cut(s) 605, 616
BspCNI CTCAG 2 cut(s) 178, 517
BspFNI CGCG 2 cut(s) 77, 120
BspLI GGNNCC 3 cut(s) 329, 519, 549
BspMAI CTGCAG 2 cut(s) 613, 978
BspMI ACCTGC 1 cut(s) 958
BspPI GGATC 6 cut(s) 290, 322, 335, 512, 525, 997
BsrDI GCAATG 1 cut(s) 538
BsrFI RCCGGY 2 cut(s) 215, 760
BssAI RCCGGY 2 cut(s) 215, 760
BssECI CCNNGG 3 cut(s) 332, 632, 948
BssMI GATC 5 cut(s) 295, 327, 382, 517, 1002
BssNAI GTATAC 1 cut(s) 712
BssT1I CCWWGG 2 cut(s) 632, 948
Bst1107I GTATAC 1 cut(s) 712
Bst2UI CCWGG 4 cut(s) 154, 334, 552, 987
Bst4CI ACNGT 1 cut(s) 592
Bst6I CTCTTC 1 cut(s) 30
BstAPI GCANNNNNTGC 3 cut(s) 45, 778, 973
BstC8I GCNNGC 3 cut(s) 50, 217, 840
BstDEI CTNAG 4 cut(s) 186, 377, 479, 504
BstF5I GGATG 1 cut(s) 274
BstFNI CGCG 2 cut(s) 77, 120
BstH2I RGCGCY 1 cut(s) 643
BstHHI GCGC 4 cut(s) 79, 122, 642, 967
BstKTI GATC 5 cut(s) 298, 330, 385, 520, 1005
BstMAI GTCTC 1 cut(s) 864
BstMBI GATC 5 cut(s) 295, 327, 382, 517, 1002
BstMWI GCNNNNNNNGC 3 cut(s) 45, 778, 973
BstNI CCWGG 4 cut(s) 154, 334, 552, 987
BstNSI RCATGY 1 cut(s) 842
BstSCI CCNGG 4 cut(s) 152, 332, 550, 985
BstSFI CTRYAG 3 cut(s) 588, 609, 974
BstUI CGCG 2 cut(s) 77, 120
BstV1I GCAGC 8 cut(s) 30, 160, 334, 649, 784, 819, 822, 988
BstV2I GAAGAC 1 cut(s) 449
BstX2I RGATCY 3 cut(s) 327, 517, 1002
BstYI RGATCY 3 cut(s) 327, 517, 1002
BstZ17I GTATAC 1 cut(s) 712
BsuRI GGCC 2 cut(s) 605, 616
BtsCI GGATG 1 cut(s) 274
BtsI GCAGTG 2 cut(s) 430, 606
BtsIMutI CAGTG 5 cut(s) 20, 219, 430, 606, 732
BveI ACCTGC 1 cut(s) 958
Cac8I GCNNGC 3 cut(s) 50, 217, 840
CaiI CAGNNNCTG 3 cut(s) 617, 778, 973
CfoI GCGC 4 cut(s) 79, 122, 642, 967
Cfr10I RCCGGY 2 cut(s) 215, 760
Cfr13I GGNCC 2 cut(s) 614, 626
CsiI ACCWGGT 1 cut(s) 550
Csp6I GTAC 3 cut(s) 469, 971, 992
CspCI CAANNNNNGTGG 2 cut(s) 288, 323
CviAII CATG 2 cut(s) 45, 839
CviQI GTAC 3 cut(s) 469, 971, 992
DdeI CTNAG 4 cut(s) 186, 377, 479, 504
DpnI GATC 5 cut(s) 297, 329, 384, 519, 1004
DpnII GATC 5 cut(s) 295, 327, 382, 517, 1002
DraI TTTAAA 1 cut(s) 450
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Ecl136II GAGCTC 1 cut(s) 561
Eco130I CCWWGG 2 cut(s) 632, 948
Eco24I GRGCYC 1 cut(s) 563
Eco32I GATATC 1 cut(s) 656
Eco47I GGWCC 1 cut(s) 626
Eco53kI GAGCTC 1 cut(s) 561
Eco57I CTGAAG 1 cut(s) 933
EcoICRI GAGCTC 1 cut(s) 561
EcoO109I RGGNCCY 1 cut(s) 614
EcoRII CCWGG 4 cut(s) 152, 332, 550, 985
EcoRV GATATC 1 cut(s) 656
EcoT14I CCWWGG 2 cut(s) 632, 948
EcoT38I GRGCYC 1 cut(s) 563
ErhI CCWWGG 2 cut(s) 632, 948
FaeI CATG 2 cut(s) 48, 842
FalI AAGNNNNNCTT 2 cut(s) 876, 908
FaqI GGGAC 1 cut(s) 839
FatI CATG 2 cut(s) 44, 838
FauI CCCGC 1 cut(s) 1014
FblI GTMKAC 1 cut(s) 711
Fnu4HI GCNGC 8 cut(s) 19, 174, 348, 638, 773, 833, 836, 977
FokI GGATG 1 cut(s) 281
FriOI GRGCYC 1 cut(s) 563
Fsp4HI GCNGC 8 cut(s) 19, 174, 348, 638, 773, 833, 836, 977
FspBI CTAG 3 cut(s) 102, 897, 998
FspI TGCGCA 1 cut(s) 966
GlaI GCGC 4 cut(s) 78, 121, 641, 966
GluI GCNGC 8 cut(s) 19, 174, 348, 638, 773, 833, 836, 977
HaeII RGCGCY 1 cut(s) 643
HaeIII GGCC 2 cut(s) 605, 616
HapII CCGG 2 cut(s) 216, 761
HhaI GCGC 4 cut(s) 79, 122, 642, 967
Hin1II CATG 2 cut(s) 48, 842
Hin6I GCGC 4 cut(s) 77, 120, 640, 965
HinP1I GCGC 4 cut(s) 77, 120, 640, 965
HinfI GANTC 3 cut(s) 97, 475, 926
HpaII CCGG 2 cut(s) 216, 761
Hpy166II GTNNAC 3 cut(s) 404, 712, 992
Hpy188I TCNGA 4 cut(s) 187, 463, 507, 558
Hpy188III TCNNGA 5 cut(s) 94, 389, 801, 856, 998
Hpy8I GTNNAC 3 cut(s) 404, 712, 992
HpyAV CCTTC 2 cut(s) 727, 908
HpyCH4III ACNGT 1 cut(s) 592
HpyCH4IV ACGT 1 cut(s) 149
HpyCH4V TGCA 8 cut(s) 18, 39, 48, 611, 815, 827, 838, 976
HpyF10VI GCNNNNNNNGC 3 cut(s) 45, 778, 973
HpyF3I CTNAG 4 cut(s) 186, 377, 479, 504
HpySE526I ACGT 1 cut(s) 149
Hsp92II CATG 2 cut(s) 48, 842
HspAI GCGC 4 cut(s) 77, 120, 640, 965
KroI GCCGGC 1 cut(s) 215
KroNI GCCGGC 1 cut(s) 217
Kzo9I GATC 5 cut(s) 295, 327, 382, 517, 1002
LmnI GCTCC 1 cut(s) 566
Lsp1109I GCAGC 8 cut(s) 30, 160, 334, 649, 784, 819, 822, 988
LweI GCATC 3 cut(s) 334, 802, 952
MabI ACCWGGT 1 cut(s) 550
MaeI CTAG 3 cut(s) 102, 897, 998
MaeII ACGT 1 cut(s) 149
MaeIII GTNAC 1 cut(s) 535
MalI GATC 5 cut(s) 297, 329, 384, 519, 1004
MboI GATC 5 cut(s) 295, 327, 382, 517, 1002
MboII GAAGA 5 cut(s) 17, 376, 377, 454, 821
MfeI CAATTG 1 cut(s) 134
MflI RGATCY 3 cut(s) 327, 517, 1002
MhlI GDGCHC 1 cut(s) 563
MluCI AATT 8 cut(s) 134, 198, 313, 367, 567, 680, 785, 953
MlyI GAGTC 1 cut(s) 91
MmeI TCCRAC 1 cut(s) 495
MnlI CCTC 6 cut(s) 91, 132, 241, 431, 639, 1005
MroNI GCCGGC 1 cut(s) 215
MroXI GAANNNNTTC 2 cut(s) 368, 583
MseI TTAA 1 cut(s) 449
MslI CAYNNNNRTG 1 cut(s) 542
MspI CCGG 2 cut(s) 216, 761
MspR9I CCNGG 4 cut(s) 154, 334, 552, 987
MunI CAATTG 1 cut(s) 134
MvaI CCWGG 4 cut(s) 154, 334, 552, 987
MvnI CGCG 2 cut(s) 77, 120
MwoI GCNNNNNNNGC 3 cut(s) 45, 778, 973
NaeI GCCGGC 1 cut(s) 217
NdeII GATC 5 cut(s) 295, 327, 382, 517, 1002
NgoMIV GCCGGC 1 cut(s) 215
NlaIII CATG 2 cut(s) 48, 842
NlaIV GGNNCC 3 cut(s) 329, 519, 549
NmeAIII GCCGAG 1 cut(s) 78
NmuCI GTSAC 1 cut(s) 535
NsbI TGCGCA 1 cut(s) 966
NspI RCATGY 1 cut(s) 842
PaeI GCATGC 1 cut(s) 842
PdiI GCCGGC 1 cut(s) 217
PdmI GAANNNNTTC 2 cut(s) 368, 583
PfeI GAWTC 2 cut(s) 475, 926
PflFI GACNNNGTC 1 cut(s) 749
PfoI TCCNGGA 1 cut(s) 152
PkrI GCNGC 8 cut(s) 20, 175, 349, 639, 774, 834, 837, 978
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
Psp124BI GAGCTC 1 cut(s) 563
Psp6I CCWGG 4 cut(s) 152, 332, 550, 985
PspGI CCWGG 4 cut(s) 152, 332, 550, 985
PspN4I GGNNCC 3 cut(s) 329, 519, 549
PspPI GGNCC 2 cut(s) 614, 626
PstI CTGCAG 2 cut(s) 613, 978
PstNI CAGNNNCTG 3 cut(s) 617, 778, 973
PsuI RGATCY 3 cut(s) 327, 517, 1002
PsyI GACNNNGTC 1 cut(s) 749
RsaI GTAC 3 cut(s) 470, 972, 993
RsaNI GTAC 3 cut(s) 469, 971, 992
RseI CAYNNNNRTG 1 cut(s) 542
SacI GAGCTC 1 cut(s) 563
SaqAI TTAA 1 cut(s) 449
SatI GCNGC 8 cut(s) 19, 174, 348, 638, 773, 833, 836, 977
Sau3AI GATC 5 cut(s) 295, 327, 382, 517, 1002
Sau96I GGNCC 2 cut(s) 614, 626
SchI GAGTC 1 cut(s) 91
ScrFI CCNGG 4 cut(s) 154, 334, 552, 987
SduI GDGCHC 1 cut(s) 563
SexAI ACCWGGT 1 cut(s) 550
SfaNI GCATC 3 cut(s) 334, 802, 952
SfcI CTRYAG 3 cut(s) 588, 609, 974
SinI GGWCC 1 cut(s) 626
SmiMI CAYNNNNRTG 1 cut(s) 542
SphI GCATGC 1 cut(s) 842
Sse9I AATT 8 cut(s) 134, 198, 313, 367, 567, 680, 785, 953
SsiI CCGC 1 cut(s) 1007
SspI AATATT 1 cut(s) 288
SspMI CTAG 3 cut(s) 102, 897, 998
SstI GAGCTC 1 cut(s) 563
StyD4I CCNGG 4 cut(s) 152, 332, 550, 985
StyI CCWWGG 2 cut(s) 632, 948
TaaI ACNGT 1 cut(s) 592
TaiI ACGT 1 cut(s) 152
TaqI TCGA 4 cut(s) 95, 206, 294, 423
TasI AATT 8 cut(s) 134, 198, 313, 367, 567, 680, 785, 953
TfiI GAWTC 2 cut(s) 475, 926
Tru1I TTAA 1 cut(s) 449
Tru9I TTAA 1 cut(s) 449
TscAI CASTG 5 cut(s) 20, 226, 437, 613, 732
TseFI GTSAC 1 cut(s) 535
TseI GCWGC 8 cut(s) 18, 173, 347, 637, 772, 832, 835, 976
Tsp45I GTSAC 1 cut(s) 535
TspDTI ATGAA 2 cut(s) 711, 838
TspGWI ACGGA 2 cut(s) 553, 882
TspRI CASTG 5 cut(s) 20, 226, 437, 613, 732
Tth111I GACNNNGTC 1 cut(s) 749
VpaK11BI GGWCC 1 cut(s) 626
XapI RAATTY 3 cut(s) 367, 680, 785
XbaI TCTAGA 1 cut(s) 997
XceI RCATGY 1 cut(s) 842
XmiI GTMKAC 1 cut(s) 711
XmnI GAANNNNTTC 2 cut(s) 368, 583
XspI CTAG 3 cut(s) 102, 897, 998
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.