MD13G1045600.v1.1
ERF Family

Beta-lactamase superfamily domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0014201
Physical Location & Seq
Forward (+)
3152510 .. 3154676
2167 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1045600.v1.1.491

Sequence Viewer

Length: 936 bp
ATGCAAGTGCAACTAATTTGGACTGGTAGGGTTGTTTCCGCTGTGGTTTCTGCGGAAAACGCAGTTCAATCGAGCTTCTCTGGCACTGATGGGTTGAAGCTCACTTATTTGGAGCCGACATTCACCTCTCCCAGACCATGCGTAAAGCGGGAGCCTTGTGCACTGGGTACGACTTTTTTTTATGGAAATAATTGGTTGTGGGATGTGGGTGGGGCGAAAATATTGGTGGATCCAATTTTGGTGGGTAATTTGGATTTTGGAATCCCCTGGCTTTATGATGCTGCCAAGAAGTTTTTGAAGAATTTCCAGCTAAGTGATATTCCAGAAACGTTAAAGCCCCTCTCCGAGAAGTACCCGAATCTTAGAGTTATAGCTACACCAAATGCTGAGGCCTTGTTGGATCCCCTTTTCAGCAATAGCTCTGTCATTGAGGCAAGAAATGGTTCTACAGTCAAAGTTCAGGCCACCGCAGGGCCAGTTCTAGGTCCTCCTTGGCAGCGCCCTGAAAATGGATATCTTGTCATCACTCCAGAAGGAAAAAGTACACTTTACTATGAACCCCATTGTGTATACAACACAAGTTCACTGGAGAGCAAAAGGGCTGACATTGTTATCACACCGGTCATAAAGCAGCTTCTGCCTTACCTTGGTCTCAGGACAAGAAGATGCACTTCAACTTGCAAAGCTGCTGAATGCCAAATAAGGATTGTTTTATTGGACGCGTATCAACGCCTTTGTTTTACATTTTGTAGGGTCATTGTCCCGATGACAAATGGGGACTTGGATGCCAAGGGGCTTCTTCCTAGTTTAGTTTCGGCTGAAGGAACAGTCGAATCATTCAAGGAACTTTTGTCCAAGGAATTACCAGATGCACAGGTACTGCAGCCAACTCCTGGTGTCCCGTTACAAATCCCGCTACGTCCAAATCTTCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lactamase_B_3

Protein Analysis

312

Amino Acids

34.21

Weight (kDa)

8.05

Isoelectric Point (pI)

32.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lactamase_B_3 PF13483 58 - 212 6.3e-11 Beta-lactamase superfamily domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29700 AT1G29700
fragaria_vesca FvH4_4g27971
malus_domestica MD13G1045600.v1.1 MD16G1046900.v1.1
prunus_persica Prupe.1G306400_v2.0.a1
pyrus_communis pycom16g04120
rosa_chinensis RchiOBHm_Chr4g0435691
rosa_laevigata RLG00000006566
rosa_multiflora Rmu_sc0000051.1_g000014
rosa_roxburghii Rroxscaffold_5G00376900
rosa_rugosa Rorug04G0288600
rosa_samantha Rh4AG343200 Rh4BG351600 Rh4CG366200 Rh4DG345800
rosa_wichuraiana Rw4G029960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 893
AccI GTMKAC 1 cut(s) 570
AccII CGCG 1 cut(s) 722
AciI CCGC 5 cut(s) 39, 53, 148, 468, 914
AclI AACGTT 1 cut(s) 329
AclWI GGATC 4 cut(s) 224, 237, 395, 408
AcsI RAATTY 1 cut(s) 301
AcuI CTGAAG 1 cut(s) 840
AfaI GTAC 4 cut(s) 169, 353, 544, 879
AfiI CCNNNNNNNGG 5 cut(s) 471, 482, 509, 647, 893
AflIII ACRYGT 1 cut(s) 720
AgeI ACCGGT 1 cut(s) 619
AgsI TTSAA 5 cut(s) 68, 97, 298, 675, 841
AjnI CCWGG 2 cut(s) 266, 892
AluBI AGCT 7 cut(s) 75, 100, 310, 374, 420, 634, 686
AluI AGCT 7 cut(s) 75, 100, 310, 374, 420, 634, 686
Alw21I GWGCWC 1 cut(s) 163
Alw26I GTCTC 1 cut(s) 656
Alw44I GTGCAC 1 cut(s) 159
AlwI GGATC 4 cut(s) 224, 237, 395, 408
AlwNI CAGNNNCTG 2 cut(s) 637, 880
AoxI GGCC 3 cut(s) 390, 462, 473
ApaLI GTGCAC 1 cut(s) 159
ApeKI GCWGC 5 cut(s) 281, 496, 631, 686, 883
ApoI RAATTY 1 cut(s) 301
AsiGI ACCGGT 1 cut(s) 619
Asp700I GAANNNNTTC 2 cut(s) 302, 442
AspLEI GCGC 1 cut(s) 501
AspS9I GGNCC 2 cut(s) 473, 485
AsuHPI GGTGA 1 cut(s) 115
AvaII GGWCC 1 cut(s) 485
BaeGI GKGCMC 1 cut(s) 163
BamHI GGATCC 2 cut(s) 229, 400
Bbv12I GWGCWC 1 cut(s) 163
BbvCI CCTCAGC 1 cut(s) 387
BbvI GCAGC 5 cut(s) 268, 508, 643, 673, 895
BccI CCATC 1 cut(s) 83
BcgI CGANNNNNNTGC 2 cut(s) 51, 85
BciT130I CCWGG 2 cut(s) 268, 894
BcoDI GTCTC 1 cut(s) 656
BfaI CTAG 2 cut(s) 482, 804
BfmI CTRYAG 2 cut(s) 447, 881
BfoI RGCGCY 1 cut(s) 502
BisI GCNGC 5 cut(s) 282, 497, 632, 687, 884
BlsI GCNGC 5 cut(s) 283, 498, 633, 688, 885
Bme1390I CCNGG 2 cut(s) 268, 894
Bme18I GGWCC 1 cut(s) 485
BmgT120I GGNCC 2 cut(s) 473, 485
BmiI GGNNCC 4 cut(s) 114, 153, 231, 402
BmrFI CCNGG 2 cut(s) 268, 894
BmrI ACTGGG 1 cut(s) 173
BmsI GCATC 4 cut(s) 268, 656, 775, 859
BmuI ACTGGG 1 cut(s) 173
BpmI CTGGAG 2 cut(s) 513, 608
Bpu10I CCTNAGC 1 cut(s) 387
BsaI GGTCTC 1 cut(s) 656
BsaJI CCNNGG 5 cut(s) 266, 491, 646, 789, 855
BsaWI WCCGGW 1 cut(s) 619
Bsc4I CCNNNNNNNGG 5 cut(s) 471, 482, 509, 647, 893
Bse118I RCCGGY 1 cut(s) 619
Bse1I ACTGG 4 cut(s) 28, 168, 476, 591
BseBI CCWGG 2 cut(s) 268, 894
BseDI CCNNGG 5 cut(s) 266, 491, 646, 789, 855
BseGI GGATG 2 cut(s) 208, 790
BseLI CCNNNNNNNGG 5 cut(s) 471, 482, 509, 647, 893
BseMII CTCAG 2 cut(s) 378, 667
BseNI ACTGG 4 cut(s) 28, 168, 476, 591
BseSI GKGCMC 1 cut(s) 163
BseXI GCAGC 5 cut(s) 268, 508, 643, 673, 895
Bsh1236I CGCG 1 cut(s) 722
BshFI GGCC 3 cut(s) 392, 464, 475
BshTI ACCGGT 1 cut(s) 619
BsiHKAI GWGCWC 1 cut(s) 163
BsiSI CCGG 1 cut(s) 620
BslFI GGGAC 3 cut(s) 746, 791, 884
BslI CCNNNNNNNGG 5 cut(s) 471, 482, 509, 647, 893
BsmAI GTCTC 1 cut(s) 656
BsmFI GGGAC 3 cut(s) 746, 791, 884
BsmI GAATGC 1 cut(s) 698
BsnI GGCC 3 cut(s) 392, 464, 475
Bso31I GGTCTC 1 cut(s) 656
Bsp1286I GDGCHC 1 cut(s) 163
Bsp143I GATC 2 cut(s) 229, 400
BspACI CCGC 5 cut(s) 39, 53, 148, 468, 914
BspANI GGCC 3 cut(s) 392, 464, 475
BspCNI CTCAG 2 cut(s) 379, 666
BspFNI CGCG 1 cut(s) 722
BspLI GGNNCC 4 cut(s) 114, 153, 231, 402
BspMAI CTGCAG 1 cut(s) 885
BspPI GGATC 4 cut(s) 224, 237, 395, 408
BspTNI GGTCTC 1 cut(s) 656
BsrFI RCCGGY 1 cut(s) 619
BsrI ACTGG 4 cut(s) 28, 168, 476, 591
BssAI RCCGGY 1 cut(s) 619
BssECI CCNNGG 5 cut(s) 266, 491, 646, 789, 855
BssMI GATC 2 cut(s) 229, 400
BssNAI GTATAC 1 cut(s) 571
BssT1I CCWWGG 4 cut(s) 491, 646, 789, 855
Bst1107I GTATAC 1 cut(s) 571
Bst2UI CCWGG 2 cut(s) 268, 894
Bst4CI ACNGT 2 cut(s) 451, 829
BstAPI GCANNNNNTGC 1 cut(s) 637
BstDEI CTNAG 4 cut(s) 311, 362, 387, 653
BstF5I GGATG 2 cut(s) 208, 790
BstFNI CGCG 1 cut(s) 722
BstH2I RGCGCY 1 cut(s) 502
BstHHI GCGC 1 cut(s) 501
BstKTI GATC 2 cut(s) 232, 403
BstMAI GTCTC 1 cut(s) 656
BstMBI GATC 2 cut(s) 229, 400
BstMWI GCNNNNNNNGC 3 cut(s) 59, 81, 637
BstNI CCWGG 2 cut(s) 268, 894
BstSCI CCNGG 2 cut(s) 266, 892
BstSFI CTRYAG 2 cut(s) 447, 881
BstSLI GKGCMC 1 cut(s) 163
BstUI CGCG 1 cut(s) 722
BstV1I GCAGC 5 cut(s) 268, 508, 643, 673, 895
BstX2I RGATCY 2 cut(s) 229, 400
BstYI RGATCY 2 cut(s) 229, 400
BstZ17I GTATAC 1 cut(s) 571
BsuRI GGCC 3 cut(s) 392, 464, 475
BtsCI GGATG 2 cut(s) 208, 790
BtsIMutI CAGTG 3 cut(s) 84, 161, 584
CaiI CAGNNNCTG 2 cut(s) 637, 880
CfoI GCGC 1 cut(s) 501
Cfr10I RCCGGY 1 cut(s) 619
Cfr13I GGNCC 2 cut(s) 473, 485
CseI GACGC 1 cut(s) 728
Csp6I GTAC 4 cut(s) 168, 352, 543, 878
CspAI ACCGGT 1 cut(s) 619
CspCI CAANNNNNGTGG 2 cut(s) 222, 257
CviAII CATG 1 cut(s) 138
CviQI GTAC 4 cut(s) 168, 352, 543, 878
DdeI CTNAG 4 cut(s) 311, 362, 387, 653
DpnI GATC 2 cut(s) 231, 402
DpnII GATC 2 cut(s) 229, 400
Eco130I CCWWGG 4 cut(s) 491, 646, 789, 855
Eco147I AGGCCT 1 cut(s) 392
Eco31I GGTCTC 1 cut(s) 656
Eco32I GATATC 1 cut(s) 515
Eco47I GGWCC 1 cut(s) 485
Eco57I CTGAAG 1 cut(s) 840
EcoO109I RGGNCCY 1 cut(s) 485
EcoRII CCWGG 2 cut(s) 266, 892
EcoRV GATATC 1 cut(s) 515
EcoT14I CCWWGG 4 cut(s) 491, 646, 789, 855
ErhI CCWWGG 4 cut(s) 491, 646, 789, 855
FaeI CATG 1 cut(s) 141
FaiI YATR 7 cut(s) 139, 183, 276, 371, 555, 571, 626
FalI AAGNNNNNCTT 2 cut(s) 655, 687
FaqI GGGAC 3 cut(s) 746, 791, 884
FatI CATG 1 cut(s) 137
FauI CCCGC 2 cut(s) 141, 921
FblI GTMKAC 1 cut(s) 570
Fnu4HI GCNGC 5 cut(s) 282, 497, 632, 687, 884
FokI GGATG 2 cut(s) 215, 797
Fsp4HI GCNGC 5 cut(s) 282, 497, 632, 687, 884
FspBI CTAG 2 cut(s) 482, 804
GlaI GCGC 1 cut(s) 500
GluI GCNGC 5 cut(s) 282, 497, 632, 687, 884
GsuI CTGGAG 2 cut(s) 513, 608
HaeII RGCGCY 1 cut(s) 502
HaeIII GGCC 3 cut(s) 392, 464, 475
HapII CCGG 1 cut(s) 620
HgaI GACGC 1 cut(s) 728
HhaI GCGC 1 cut(s) 501
Hin1II CATG 1 cut(s) 141
Hin6I GCGC 1 cut(s) 499
HinP1I GCGC 1 cut(s) 499
HinfI GANTC 3 cut(s) 261, 358, 833
HpaII CCGG 1 cut(s) 620
HphI GGTGA 1 cut(s) 115
Hpy166II GTNNAC 4 cut(s) 161, 545, 571, 584
Hpy188I TCNGA 1 cut(s) 346
Hpy188III TCNNGA 4 cut(s) 323, 530, 655, 763
Hpy8I GTNNAC 4 cut(s) 161, 545, 571, 584
HpyAV CCTTC 2 cut(s) 527, 815
HpyCH4III ACNGT 2 cut(s) 451, 829
HpyCH4IV ACGT 2 cut(s) 329, 919
HpyCH4V TGCA 7 cut(s) 4, 10, 161, 669, 681, 872, 883
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 81, 637
HpyF3I CTNAG 4 cut(s) 311, 362, 387, 653
HpySE526I ACGT 2 cut(s) 329, 919
Hsp92II CATG 1 cut(s) 141
HspAI GCGC 1 cut(s) 499
Kzo9I GATC 2 cut(s) 229, 400
LmnI GCTCC 2 cut(s) 112, 151
Lsp1109I GCAGC 5 cut(s) 268, 508, 643, 673, 895
LweI GCATC 4 cut(s) 268, 656, 775, 859
MaeI CTAG 2 cut(s) 482, 804
MaeII ACGT 2 cut(s) 329, 919
MaeIII GTNAC 1 cut(s) 903
MalI GATC 2 cut(s) 231, 402
MboI GATC 2 cut(s) 229, 400
MboII GAAGA 4 cut(s) 310, 675, 791, 920
MflI RGATCY 2 cut(s) 229, 400
MhlI GDGCHC 1 cut(s) 163
MluCI AATT 6 cut(s) 15, 190, 234, 247, 301, 860
MluI ACGCGT 1 cut(s) 720
MmeI TCCRAC 1 cut(s) 378
MnlI CCTC 5 cut(s) 136, 350, 382, 424, 498
MroXI GAANNNNTTC 2 cut(s) 302, 442
MseI TTAA 1 cut(s) 332
MspA1I CMGCKG 1 cut(s) 41
MspI CCGG 1 cut(s) 620
MspR9I CCNGG 2 cut(s) 268, 894
Mva1269I GAATGC 1 cut(s) 698
MvaI CCWGG 2 cut(s) 268, 894
MvnI CGCG 1 cut(s) 722
MwoI GCNNNNNNNGC 3 cut(s) 59, 81, 637
NdeII GATC 2 cut(s) 229, 400
NlaIII CATG 1 cut(s) 141
NlaIV GGNNCC 4 cut(s) 114, 153, 231, 402
PceI AGGCCT 1 cut(s) 392
PctI GAATGC 1 cut(s) 698
PdmI GAANNNNTTC 2 cut(s) 302, 442
PfeI GAWTC 3 cut(s) 261, 358, 833
PflMI CCANNNNNTGG 1 cut(s) 893
PinAI ACCGGT 1 cut(s) 619
PkrI GCNGC 5 cut(s) 283, 498, 633, 688, 885
PpuMI RGGWCCY 1 cut(s) 485
Psp1406I AACGTT 1 cut(s) 329
Psp5II RGGWCCY 1 cut(s) 485
Psp6I CCWGG 2 cut(s) 266, 892
PspGI CCWGG 2 cut(s) 266, 892
PspN4I GGNNCC 4 cut(s) 114, 153, 231, 402
PspPI GGNCC 2 cut(s) 473, 485
PspPPI RGGWCCY 1 cut(s) 485
PstI CTGCAG 1 cut(s) 885
PstNI CAGNNNCTG 2 cut(s) 637, 880
PsuI RGATCY 2 cut(s) 229, 400
RsaI GTAC 4 cut(s) 169, 353, 544, 879
RsaNI GTAC 4 cut(s) 168, 352, 543, 878
SaqAI TTAA 1 cut(s) 332
SatI GCNGC 5 cut(s) 282, 497, 632, 687, 884
Sau3AI GATC 2 cut(s) 229, 400
Sau96I GGNCC 2 cut(s) 473, 485
ScrFI CCNGG 2 cut(s) 268, 894
SduI GDGCHC 1 cut(s) 163
SfaNI GCATC 4 cut(s) 268, 656, 775, 859
SfcI CTRYAG 2 cut(s) 447, 881
SinI GGWCC 1 cut(s) 485
Sse9I AATT 6 cut(s) 15, 190, 234, 247, 301, 860
SseBI AGGCCT 1 cut(s) 392
SsiI CCGC 5 cut(s) 39, 53, 148, 468, 914
SspI AATATT 1 cut(s) 222
SspMI CTAG 2 cut(s) 482, 804
StuI AGGCCT 1 cut(s) 392
StyD4I CCNGG 2 cut(s) 266, 892
StyI CCWWGG 4 cut(s) 491, 646, 789, 855
TaaI ACNGT 2 cut(s) 451, 829
TaiI ACGT 2 cut(s) 332, 922
TaqI TCGA 2 cut(s) 71, 831
TasI AATT 6 cut(s) 15, 190, 234, 247, 301, 860
TatI WGTACW 1 cut(s) 542
TfiI GAWTC 3 cut(s) 261, 358, 833
Tru1I TTAA 1 cut(s) 332
Tru9I TTAA 1 cut(s) 332
TscAI CASTG 3 cut(s) 91, 168, 591
TseI GCWGC 5 cut(s) 281, 496, 631, 686, 883
TspDTI ATGAA 1 cut(s) 570
TspGWI ACGGA 1 cut(s) 921
TspRI CASTG 3 cut(s) 91, 168, 591
Van91I CCANNNNNTGG 1 cut(s) 893
VneI GTGCAC 1 cut(s) 159
VpaK11BI GGWCC 1 cut(s) 485
XapI RAATTY 1 cut(s) 301
XmiI GTMKAC 1 cut(s) 570
XmnI GAANNNNTTC 2 cut(s) 302, 442
XspI CTAG 2 cut(s) 482, 804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.