AT1G31335

cellular macromolecule catabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0017169
Physical Location & Seq
Reverse (-)
11216810 .. 11217546
737 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G31335.1

Sequence Viewer

Length: 213 bp
ATGGGTTTGGTTGTGGTCATATCTCTGCCTCTAATTTTCTTCTGTCTACTTCTCGGATTTGGCTGCTACTTCCTCGGAAAATCTCGCGGCCGTCGTGAGATCCGTACAAATCCTCAGGTGTATGGAGCTCCAGCTCCGCCTCCCGGTGCTATCGCCGCCTCCTCTCCGCCGTTGTCTCCACACGCCAAGCCCGACAATTCTCACAACGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

7.41

Weight (kDa)

9.69

Isoelectric Point (pI)

54.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017169)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31335
malus_domestica MD05G1260300.v1.1 MD10G1239200.v1.1
prunus_persica Prupe.4G105200_v2.0.a1
pyrus_communis pycom05g24400 pycom05g24410 pycom10g20020
rosa_chinensis RchiOBHm_Chr5g0018941
rosa_roxburghii Rroxscaffold_1G00058930 Rroxscaffold_1G00073930
rosa_samantha Rh5AG138500 Rh5BG137200
rosa_wichuraiana Rw5G012270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 46
AccII CGCG 1 cut(s) 87
AciI CCGC 4 cut(s) 87, 137, 156, 167
AclWI GGATC 1 cut(s) 94
AcoI YGGCCR 1 cut(s) 88
AfaI GTAC 1 cut(s) 106
AfiI CCNNNNNNNGG 1 cut(s) 143
AluBI AGCT 2 cut(s) 128, 134
AluI AGCT 2 cut(s) 128, 134
Alw21I GWGCWC 1 cut(s) 130
Alw26I GTCTC 1 cut(s) 180
AlwI GGATC 1 cut(s) 94
AoxI GGCC 1 cut(s) 88
ApeKI GCWGC 1 cut(s) 63
AsuC2I CCSGG 1 cut(s) 144
AxyI CCTNAGG 1 cut(s) 114
BanII GRGCYC 1 cut(s) 130
Bbv12I GWGCWC 1 cut(s) 130
BbvI GCAGC 1 cut(s) 50
BceAI ACGGC 2 cut(s) 75, 154
BcnI CCSGG 1 cut(s) 144
BcoDI GTCTC 1 cut(s) 180
BisI GCNGC 3 cut(s) 64, 88, 156
BlsI GCNGC 3 cut(s) 65, 89, 157
Bme1390I CCNGG 1 cut(s) 144
BmrFI CCNGG 1 cut(s) 144
BpmI CTGGAG 1 cut(s) 114
BpuMI CCSGG 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 73
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse21I CCTNAGG 1 cut(s) 114
BseDI CCNNGG 1 cut(s) 73
BseLI CCNNNNNNNGG 1 cut(s) 143
BseMII CTCAG 1 cut(s) 128
BseRI GAGGAG 1 cut(s) 151
BseX3I CGGCCG 1 cut(s) 88
BseXI GCAGC 1 cut(s) 50
Bsh1236I CGCG 1 cut(s) 87
Bsh1285I CGRYCG 1 cut(s) 91
BshFI GGCC 1 cut(s) 90
BsiEI CGRYCG 1 cut(s) 91
BsiHKAI GWGCWC 1 cut(s) 130
BsiSI CCGG 1 cut(s) 144
BslI CCNNNNNNNGG 1 cut(s) 143
BsmAI GTCTC 1 cut(s) 180
BsnI GGCC 1 cut(s) 90
Bsp1286I GDGCHC 1 cut(s) 130
Bsp143I GATC 1 cut(s) 99
BspACI CCGC 4 cut(s) 87, 137, 156, 167
BspANI GGCC 1 cut(s) 90
BspCNI CTCAG 1 cut(s) 127
BspFNI CGCG 1 cut(s) 87
BspPI GGATC 1 cut(s) 94
BssECI CCNNGG 1 cut(s) 73
BssMI GATC 1 cut(s) 99
BstDEI CTNAG 1 cut(s) 114
BstFNI CGCG 1 cut(s) 87
BstKTI GATC 1 cut(s) 102
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 1 cut(s) 99
BstMCI CGRYCG 1 cut(s) 91
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstSCI CCNGG 1 cut(s) 142
BstUI CGCG 1 cut(s) 87
BstV1I GCAGC 1 cut(s) 50
BstX2I RGATCY 1 cut(s) 99
BstYI RGATCY 1 cut(s) 99
BstZI CGGCCG 1 cut(s) 88
Bsu36I CCTNAGG 1 cut(s) 114
BsuRI GGCC 1 cut(s) 90
Csp6I GTAC 1 cut(s) 105
CviJI RGCY 5 cut(s) 63, 90, 128, 134, 190
CviKI_1 RGCY 5 cut(s) 63, 90, 128, 134, 190
CviQI GTAC 1 cut(s) 105
DdeI CTNAG 1 cut(s) 114
DpnI GATC 1 cut(s) 101
DpnII GATC 1 cut(s) 99
EaeI YGGCCR 1 cut(s) 88
EagI CGGCCG 1 cut(s) 88
EciI GGCGGA 2 cut(s) 126, 156
Ecl136II GAGCTC 1 cut(s) 128
EclXI CGGCCG 1 cut(s) 88
Eco24I GRGCYC 1 cut(s) 130
Eco52I CGGCCG 1 cut(s) 88
Eco53kI GAGCTC 1 cut(s) 128
Eco81I CCTNAGG 1 cut(s) 114
EcoICRI GAGCTC 1 cut(s) 128
EcoT38I GRGCYC 1 cut(s) 130
FaiI YATR 2 cut(s) 20, 123
FblI GTMKAC 1 cut(s) 46
Fnu4HI GCNGC 3 cut(s) 64, 88, 156
FriOI GRGCYC 1 cut(s) 130
Fsp4HI GCNGC 3 cut(s) 64, 88, 156
GluI GCNGC 3 cut(s) 64, 88, 156
GsuI CTGGAG 1 cut(s) 114
HaeIII GGCC 1 cut(s) 90
HapII CCGG 1 cut(s) 144
HpaII CCGG 1 cut(s) 144
Hpy166II GTNNAC 1 cut(s) 47
Hpy188I TCNGA 3 cut(s) 56, 77, 212
Hpy188III TCNNGA 1 cut(s) 95
Hpy8I GTNNAC 1 cut(s) 47
Hpy99I CGWCG 1 cut(s) 96
HpyCH4IV ACGT 1 cut(s) 207
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 1 cut(s) 114
HpySE526I ACGT 1 cut(s) 207
Kzo9I GATC 1 cut(s) 99
LmnI GCTCC 3 cut(s) 125, 133, 139
LpnPI CCDG 3 cut(s) 101, 144, 157
Lsp1109I GCAGC 1 cut(s) 50
MaeII ACGT 1 cut(s) 207
MalI GATC 1 cut(s) 101
MboI GATC 1 cut(s) 99
MboII GAAGA 1 cut(s) 31
MflI RGATCY 1 cut(s) 99
MhlI GDGCHC 1 cut(s) 130
MluCI AATT 2 cut(s) 33, 196
MnlI CCTC 6 cut(s) 39, 83, 123, 150, 169, 172
MspI CCGG 1 cut(s) 144
MspR9I CCNGG 1 cut(s) 144
MvnI CGCG 1 cut(s) 87
MwoI GCNNNNNNNGC 1 cut(s) 155
NciI CCSGG 1 cut(s) 144
NdeII GATC 1 cut(s) 99
PcsI WCGNNNNNNNCGW 3 cut(s) 91, 100, 189
PkrI GCNGC 3 cut(s) 65, 89, 157
Psp124BI GAGCTC 1 cut(s) 130
PsuI RGATCY 1 cut(s) 99
RsaI GTAC 1 cut(s) 106
RsaNI GTAC 1 cut(s) 105
SacI GAGCTC 1 cut(s) 130
SatI GCNGC 3 cut(s) 64, 88, 156
Sau3AI GATC 1 cut(s) 99
ScrFI CCNGG 1 cut(s) 144
SduI GDGCHC 1 cut(s) 130
SetI ASST 4 cut(s) 120, 130, 136, 210
Sse9I AATT 2 cut(s) 33, 196
SsiI CCGC 4 cut(s) 87, 137, 156, 167
SstI GAGCTC 1 cut(s) 130
StyD4I CCNGG 1 cut(s) 142
TaiI ACGT 1 cut(s) 210
TasI AATT 2 cut(s) 33, 196
TauI GCSGC 2 cut(s) 90, 158
TseI GCWGC 1 cut(s) 63
TspGWI ACGGA 1 cut(s) 92
XmiI GTMKAC 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.