pycom10g20020

cellular macromolecule catabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0017169
Physical Location & Seq
Reverse (-)
23029350 .. 23030045
696 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g20020.2

Sequence Viewer

Length: 489 bp
ATGGAAGTATTGAACCCCGCCAGATCACTTGAGGCAACAAATTCAGGCCCCGCGTTCTATTCGTTTCTATTGTCCCCCCAAAAAAGTGACCTCCTGTCACTCACGTTGCTCTTCTGGACAGAATCAGAAACCTCCAGATCACCATACTTCACTCCACAAACTACTAATTATATATACTCCCTCTCAGTCTCATCAGAATTCAAAACTCAAACGAAGGAGGAAAGCTTTGGAGAAGTGAAAGTAGCAGCAACAACCAGAACAAGAAAGGGAGACATGGGCATGGTGGTGGTGATCTCTCTGCCTTTTATTTTGTTCACCATACTGCTGGGTTTCGGGTGCTACTTCTTCGGGAGAGCGAGAGGGCGAAAGGACGCGATCGCCACGGCTCAGGTTTACGGGATGCCTGCTCCTCCGCCAGGAGCTACTAACTCTCTCCCTTCCTCTCCTCCACCACATCCTTTCAAGCATGACAACTCTGCCAATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

17.74

Weight (kDa)

8.73

Isoelectric Point (pI)

49.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017169)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31335
malus_domestica MD05G1260300.v1.1 MD10G1239200.v1.1
prunus_persica Prupe.4G105200_v2.0.a1
pyrus_communis pycom05g24400 pycom05g24410 pycom10g20020
rosa_chinensis RchiOBHm_Chr5g0018941
rosa_roxburghii Rroxscaffold_1G00058930 Rroxscaffold_1G00073930
rosa_samantha Rh5AG138500 Rh5BG137200
rosa_wichuraiana Rw5G012270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 53, 374
AciI CCGC 3 cut(s) 18, 51, 413
AcsI RAATTY 2 cut(s) 40, 197
AfiI CCNNNNNNNGG 1 cut(s) 416
AgsI TTSAA 3 cut(s) 13, 202, 463
AhdI GACNNNNNGTC 1 cut(s) 94
AjnI CCWGG 1 cut(s) 415
AluBI AGCT 2 cut(s) 225, 422
AluI AGCT 2 cut(s) 225, 422
Alw26I GTCTC 2 cut(s) 193, 264
AoxI GGCC 1 cut(s) 46
ApeKI GCWGC 1 cut(s) 245
ApoI RAATTY 2 cut(s) 40, 197
AsiSI GCGATCGC 1 cut(s) 378
AspS9I GGNCC 1 cut(s) 47
AsuHPI GGTGA 3 cut(s) 132, 301, 307
BbvI GCAGC 1 cut(s) 257
BceAI ACGGC 1 cut(s) 399
BciT130I CCWGG 1 cut(s) 417
BcoDI GTCTC 2 cut(s) 193, 264
BisI GCNGC 1 cut(s) 246
BlsI GCNGC 1 cut(s) 247
Bme1390I CCNGG 1 cut(s) 417
BmeRI GACNNNNNGTC 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 47
BmiI GGNNCC 1 cut(s) 49
BmrFI CCNGG 1 cut(s) 417
BmsI GCATC 1 cut(s) 390
BpmI CTGGAG 1 cut(s) 118
Bpu10I CCTNAGC 1 cut(s) 387
BpuEI CTTGAG 1 cut(s) 50
BsaJI CCNNGG 1 cut(s) 381
Bsc4I CCNNNNNNNGG 1 cut(s) 416
BseBI CCWGG 1 cut(s) 417
BseDI CCNNGG 1 cut(s) 381
BseGI GGATG 2 cut(s) 405, 454
BseLI CCNNNNNNNGG 1 cut(s) 416
BseMII CTCAG 2 cut(s) 198, 401
BseRI GAGGAG 2 cut(s) 399, 435
BseXI GCAGC 1 cut(s) 257
BseYI CCCAGC 1 cut(s) 325
Bsh1236I CGCG 2 cut(s) 53, 374
Bsh1285I CGRYCG 1 cut(s) 378
BshFI GGCC 1 cut(s) 48
BsiEI CGRYCG 1 cut(s) 378
BslFI GGGAC 1 cut(s) 58
BslI CCNNNNNNNGG 1 cut(s) 416
BsmAI GTCTC 2 cut(s) 193, 264
BsmFI GGGAC 1 cut(s) 58
BsnI GGCC 1 cut(s) 48
Bsp143I GATC 4 cut(s) 23, 137, 291, 375
BspACI CCGC 3 cut(s) 18, 51, 413
BspANI GGCC 1 cut(s) 48
BspCNI CTCAG 2 cut(s) 197, 400
BspFNI CGCG 2 cut(s) 53, 374
BspLI GGNNCC 1 cut(s) 49
BspQI GCTCTTC 1 cut(s) 116
BssECI CCNNGG 1 cut(s) 381
BssMI GATC 4 cut(s) 23, 137, 291, 375
Bst2UI CCWGG 1 cut(s) 417
Bst6I CTCTTC 1 cut(s) 116
BstC8I GCNNGC 1 cut(s) 405
BstDEI CTNAG 2 cut(s) 184, 387
BstDSI CCRYGG 1 cut(s) 381
BstENI CCTNNNNNAGG 1 cut(s) 414
BstF5I GGATG 2 cut(s) 405, 454
BstFNI CGCG 2 cut(s) 53, 374
BstKTI GATC 4 cut(s) 26, 140, 294, 378
BstMAI GTCTC 2 cut(s) 193, 264
BstMBI GATC 4 cut(s) 23, 137, 291, 375
BstMCI CGRYCG 1 cut(s) 378
BstNI CCWGG 1 cut(s) 417
BstSCI CCNGG 1 cut(s) 415
BstUI CGCG 2 cut(s) 53, 374
BstV1I GCAGC 1 cut(s) 257
BstXI CCANNNNNNTGG 1 cut(s) 325
BsuRI GGCC 1 cut(s) 48
BtgI CCRYGG 1 cut(s) 381
BtsCI GGATG 2 cut(s) 405, 454
Cac8I GCNNGC 1 cut(s) 405
Cfr13I GGNCC 1 cut(s) 47
CseI GACGC 1 cut(s) 380
CviAII CATG 3 cut(s) 274, 280, 467
CviJI RGCY 4 cut(s) 48, 225, 386, 422
CviKI_1 RGCY 4 cut(s) 48, 225, 386, 422
DdeI CTNAG 2 cut(s) 184, 387
DpnI GATC 4 cut(s) 25, 139, 293, 377
DpnII GATC 4 cut(s) 23, 137, 291, 375
DriI GACNNNNNGTC 1 cut(s) 94
Eam1104I CTCTTC 1 cut(s) 116
Eam1105I GACNNNNNGTC 1 cut(s) 94
EarI CTCTTC 1 cut(s) 116
EciI GGCGGA 1 cut(s) 402
EcoNI CCTNNNNNAGG 1 cut(s) 414
EcoO109I RGGNCCY 1 cut(s) 47
EcoRI GAATTC 1 cut(s) 197
EcoRII CCWGG 1 cut(s) 415
FaeI CATG 3 cut(s) 277, 283, 470
FaiI YATR 8 cut(s) 145, 171, 173, 175, 275, 281, 320, 468
FaqI GGGAC 1 cut(s) 58
FatI CATG 3 cut(s) 273, 279, 466
FauI CCCGC 2 cut(s) 25, 58
Fnu4HI GCNGC 1 cut(s) 246
FokI GGATG 2 cut(s) 412, 441
Fsp4HI GCNGC 1 cut(s) 246
GluI GCNGC 1 cut(s) 246
GsaI CCCAGC 1 cut(s) 329
GsuI CTGGAG 1 cut(s) 118
HaeIII GGCC 1 cut(s) 48
HgaI GACGC 1 cut(s) 380
Hin1II CATG 3 cut(s) 277, 283, 470
HindIII AAGCTT 1 cut(s) 223
HinfI GANTC 1 cut(s) 122
HphI GGTGA 3 cut(s) 132, 301, 307
Hpy166II GTNNAC 2 cut(s) 315, 394
Hpy188I TCNGA 2 cut(s) 127, 196
Hpy188III TCNNGA 3 cut(s) 115, 135, 349
Hpy8I GTNNAC 2 cut(s) 315, 394
HpyAV CCTTC 2 cut(s) 208, 447
HpyCH4IV ACGT 1 cut(s) 104
HpyF3I CTNAG 2 cut(s) 184, 387
HpySE526I ACGT 1 cut(s) 104
Hsp92II CATG 3 cut(s) 277, 283, 470
Kzo9I GATC 4 cut(s) 23, 137, 291, 375
LguI GCTCTTC 1 cut(s) 116
LmnI GCTCC 2 cut(s) 412, 419
Lsp1109I GCAGC 1 cut(s) 257
LweI GCATC 1 cut(s) 390
MaeII ACGT 1 cut(s) 104
MaeIII GTNAC 2 cut(s) 86, 96
MalI GATC 4 cut(s) 25, 139, 293, 377
MboI GATC 4 cut(s) 23, 137, 291, 375
MboII GAAGA 2 cut(s) 103, 337
MluCI AATT 3 cut(s) 40, 166, 197
MnlI CCTC 9 cut(s) 25, 101, 142, 191, 211, 353, 420, 451, 456
MseI TTAA 1 cut(s) 487
MslI CAYNNNNRTG 2 cut(s) 278, 284
MspR9I CCNGG 1 cut(s) 417
MvaI CCWGG 1 cut(s) 417
MvnI CGCG 2 cut(s) 53, 374
NdeII GATC 4 cut(s) 23, 137, 291, 375
NlaIII CATG 3 cut(s) 277, 283, 470
NlaIV GGNNCC 1 cut(s) 49
NmuCI GTSAC 2 cut(s) 86, 96
PciSI GCTCTTC 1 cut(s) 116
PfeI GAWTC 1 cut(s) 122
PkrI GCNGC 1 cut(s) 247
Ple19I CGATCG 1 cut(s) 378
Psp6I CCWGG 1 cut(s) 415
PspFI CCCAGC 1 cut(s) 325
PspGI CCWGG 1 cut(s) 415
PspN4I GGNNCC 1 cut(s) 49
PspPI GGNCC 1 cut(s) 47
PvuI CGATCG 1 cut(s) 378
RgaI GCGATCGC 1 cut(s) 378
RseI CAYNNNNRTG 2 cut(s) 278, 284
SapI GCTCTTC 1 cut(s) 116
SaqAI TTAA 1 cut(s) 487
SatI GCNGC 1 cut(s) 246
Sau3AI GATC 4 cut(s) 23, 137, 291, 375
Sau96I GGNCC 1 cut(s) 47
ScrFI CCNGG 1 cut(s) 417
SetI ASST 6 cut(s) 93, 107, 134, 227, 393, 424
SfaAI GCGATCGC 1 cut(s) 378
SfaNI GCATC 1 cut(s) 390
SgfI GCGATCGC 1 cut(s) 378
SmiMI CAYNNNNRTG 2 cut(s) 278, 284
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
Sse9I AATT 3 cut(s) 40, 166, 197
SsiI CCGC 3 cut(s) 18, 51, 413
StyD4I CCNGG 1 cut(s) 415
TaiI ACGT 1 cut(s) 107
TasI AATT 3 cut(s) 40, 166, 197
TfiI GAWTC 1 cut(s) 122
Tru1I TTAA 1 cut(s) 487
Tru9I TTAA 1 cut(s) 487
TseFI GTSAC 2 cut(s) 86, 96
TseI GCWGC 1 cut(s) 245
Tsp45I GTSAC 2 cut(s) 86, 96
XagI CCTNNNNNAGG 1 cut(s) 414
XapI RAATTY 2 cut(s) 40, 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.