cellular macromolecule catabolic process
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G31335 |
| malus_domestica | MD05G1260300.v1.1 MD10G1239200.v1.1 |
| prunus_persica | Prupe.4G105200_v2.0.a1 |
| pyrus_communis | pycom05g24400 pycom05g24410 pycom10g20020 |
| rosa_chinensis | RchiOBHm_Chr5g0018941 |
| rosa_roxburghii | Rroxscaffold_1G00058930 Rroxscaffold_1G00073930 |
| rosa_samantha | Rh5AG138500 Rh5BG137200 |
| rosa_wichuraiana | Rw5G012270 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 121 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 137 |
| AgsI | TTSAA | 1 cut(s) | 184 |
| AjnI | CCWGG | 1 cut(s) | 136 |
| AluBI | AGCT | 1 cut(s) | 143 |
| AluI | AGCT | 1 cut(s) | 143 |
| AsuHPI | GGTGA | 2 cut(s) | 22, 28 |
| BanI | GGYRCC | 1 cut(s) | 121 |
| BceAI | ACGGC | 1 cut(s) | 120 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 179 |
| BciT130I | CCWGG | 1 cut(s) | 138 |
| Bme1390I | CCNGG | 1 cut(s) | 138 |
| BmiI | GGNNCC | 1 cut(s) | 123 |
| BmrFI | CCNGG | 1 cut(s) | 138 |
| BmsI | GCATC | 1 cut(s) | 82 |
| Bpu10I | CCTNAGC | 1 cut(s) | 108 |
| BsaJI | CCNNGG | 1 cut(s) | 102 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 137 |
| BseBI | CCWGG | 1 cut(s) | 138 |
| BseDI | CCNNGG | 1 cut(s) | 102 |
| BseGI | GGATG | 2 cut(s) | 97, 175 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 137 |
| BseMII | CTCAG | 1 cut(s) | 122 |
| BseRI | GAGGAG | 2 cut(s) | 120, 156 |
| BseYI | CCCAGC | 1 cut(s) | 46 |
| BshNI | GGYRCC | 1 cut(s) | 121 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 137 |
| Bsp143I | GATC | 1 cut(s) | 12 |
| BspCNI | CTCAG | 1 cut(s) | 121 |
| BspLI | GGNNCC | 1 cut(s) | 123 |
| BspT107I | GGYRCC | 1 cut(s) | 121 |
| BssECI | CCNNGG | 1 cut(s) | 102 |
| BssMI | GATC | 1 cut(s) | 12 |
| Bst2UI | CCWGG | 1 cut(s) | 138 |
| BstC8I | GCNNGC | 1 cut(s) | 126 |
| BstDEI | CTNAG | 1 cut(s) | 108 |
| BstDSI | CCRYGG | 1 cut(s) | 102 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 135 |
| BstF5I | GGATG | 2 cut(s) | 97, 175 |
| BstKTI | GATC | 1 cut(s) | 15 |
| BstMBI | GATC | 1 cut(s) | 12 |
| BstNI | CCWGG | 1 cut(s) | 138 |
| BstSCI | CCNGG | 1 cut(s) | 136 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 46 |
| BtgI | CCRYGG | 1 cut(s) | 102 |
| BtsCI | GGATG | 2 cut(s) | 97, 175 |
| Cac8I | GCNNGC | 1 cut(s) | 126 |
| CviJI | RGCY | 2 cut(s) | 107, 143 |
| CviKI_1 | RGCY | 2 cut(s) | 107, 143 |
| DdeI | CTNAG | 1 cut(s) | 108 |
| DpnI | GATC | 1 cut(s) | 14 |
| DpnII | GATC | 1 cut(s) | 12 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 135 |
| EcoRII | CCWGG | 1 cut(s) | 136 |
| FaiI | YATR | 1 cut(s) | 41 |
| FokI | GGATG | 2 cut(s) | 104, 162 |
| GsaI | CCCAGC | 1 cut(s) | 50 |
| HphI | GGTGA | 2 cut(s) | 22, 28 |
| Hpy166II | GTNNAC | 2 cut(s) | 36, 115 |
| Hpy188III | TCNNGA | 1 cut(s) | 70 |
| Hpy8I | GTNNAC | 2 cut(s) | 36, 115 |
| HpyAV | CCTTC | 2 cut(s) | 168, 190 |
| HpyF3I | CTNAG | 1 cut(s) | 108 |
| Kzo9I | GATC | 1 cut(s) | 12 |
| LmnI | GCTCC | 2 cut(s) | 133, 140 |
| LpnPI | CCDG | 5 cut(s) | 32, 95, 123, 138, 150 |
| LweI | GCATC | 1 cut(s) | 82 |
| MalI | GATC | 1 cut(s) | 14 |
| MboI | GATC | 1 cut(s) | 12 |
| MboII | GAAGA | 1 cut(s) | 58 |
| MnlI | CCTC | 5 cut(s) | 74, 141, 164, 177, 183 |
| MspR9I | CCNGG | 1 cut(s) | 138 |
| MvaI | CCWGG | 1 cut(s) | 138 |
| NdeII | GATC | 1 cut(s) | 12 |
| NlaIV | GGNNCC | 1 cut(s) | 123 |
| Psp6I | CCWGG | 1 cut(s) | 136 |
| PspFI | CCCAGC | 1 cut(s) | 46 |
| PspGI | CCWGG | 1 cut(s) | 136 |
| PspN4I | GGNNCC | 1 cut(s) | 123 |
| Sau3AI | GATC | 1 cut(s) | 12 |
| ScrFI | CCNGG | 1 cut(s) | 138 |
| SetI | ASST | 3 cut(s) | 114, 145, 175 |
| SfaNI | GCATC | 1 cut(s) | 82 |
| StyD4I | CCNGG | 1 cut(s) | 136 |
| TspDTI | ATGAA | 1 cut(s) | 150 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 135 |