Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0017169

Physical Location & Seq

Genomic Coordinates Reverse (-)

39552173 .. 39552388

Gene Structure 216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1260300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGGGTATGGTGGTGGTGATCTCTCTGCCTTTTATTTTGTTCACCATACTTCTGGGTTTCGGGTGCTACTTCTTCGGGAGAGCGAGGGGGCGAAGGGATGCTATTGCCACGGCTCAGGTTTACGGGGCGCCTGCTCCTCCACCAGGAGCTAATAACACCCTCCCTTCATCTCCTCCACCGCATCCTTTCAAACACGACAACTCTGCCAATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0019538 GO:0031386 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045116 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03010 ko03320 map03010 map03320

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

72

Amino Acids

7.54

Weight (kDa)

9.78

Isoelectric Point (pI)

54.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31335
malus_domestica	MD05G1260300.v1.1 MD10G1239200.v1.1
prunus_persica	Prupe.4G105200_v2.0.a1
pyrus_communis	pycom05g24400 pycom05g24410 pycom10g20020
rosa_chinensis	RchiOBHm_Chr5g0018941
rosa_roxburghii	Rroxscaffold_1G00058930 Rroxscaffold_1G00073930
rosa_samantha	Rh5AG138500 Rh5BG137200
rosa_wichuraiana	Rw5G012270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	127
AciI	CCGC	1 cut(s)	179
AcyI	GRCGYC	1 cut(s)	128
AfiI	CCNNNNNNNGG	1 cut(s)	143
AgsI	TTSAA	1 cut(s)	190
AjnI	CCWGG	1 cut(s)	142
AluBI	AGCT	1 cut(s)	149
AluI	AGCT	1 cut(s)	149
AspLEI	GCGC	1 cut(s)	130
AsuHPI	GGTGA	2 cut(s)	28, 34
BanI	GGYRCC	1 cut(s)	127
BceAI	ACGGC	1 cut(s)	126
BcgI	CGANNNNNNTGC	1 cut(s)	185
BciT130I	CCWGG	1 cut(s)	144
BfoI	RGCGCY	1 cut(s)	131
Bme1390I	CCNGG	1 cut(s)	144
BmiI	GGNNCC	1 cut(s)	129
BmrFI	CCNGG	1 cut(s)	144
BmsI	GCATC	2 cut(s)	88, 190
Bpu10I	CCTNAGC	1 cut(s)	114
BsaHI	GRCGYC	1 cut(s)	128
BsaJI	CCNNGG	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
BseBI	CCWGG	1 cut(s)	144
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	2 cut(s)	103, 181
BseLI	CCNNNNNNNGG	1 cut(s)	143
BseMII	CTCAG	1 cut(s)	128
BseRI	GAGGAG	2 cut(s)	126, 162
BshNI	GGYRCC	1 cut(s)	127
BslI	CCNNNNNNNGG	1 cut(s)	143
Bsp143I	GATC	1 cut(s)	18
BspACI	CCGC	1 cut(s)	179
BspCNI	CTCAG	1 cut(s)	127
BspLI	GGNNCC	1 cut(s)	129
BspT107I	GGYRCC	1 cut(s)	127
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	1 cut(s)	18
BssNI	GRCGYC	1 cut(s)	128
Bst2UI	CCWGG	1 cut(s)	144
BstACI	GRCGYC	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	1 cut(s)	114
BstDSI	CCRYGG	1 cut(s)	108
BstENI	CCTNNNNNAGG	1 cut(s)	141
BstF5I	GGATG	2 cut(s)	103, 181
BstH2I	RGCGCY	1 cut(s)	131
BstHHI	GCGC	1 cut(s)	130
BstKTI	GATC	1 cut(s)	21
BstMBI	GATC	1 cut(s)	18
BstNI	CCWGG	1 cut(s)	144
BstSCI	CCNGG	1 cut(s)	142
BstXI	CCANNNNNNTGG	1 cut(s)	52
BtgI	CCRYGG	1 cut(s)	108
BtsCI	GGATG	2 cut(s)	103, 181
Cac8I	GCNNGC	1 cut(s)	132
CfoI	GCGC	1 cut(s)	130
CviJI	RGCY	2 cut(s)	113, 149
CviKI_1	RGCY	2 cut(s)	113, 149
DdeI	CTNAG	1 cut(s)	114
DinI	GGCGCC	1 cut(s)	129
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
EcoNI	CCTNNNNNAGG	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	142
EgeI	GGCGCC	1 cut(s)	129
EheI	GGCGCC	1 cut(s)	129
FaiI	YATR	2 cut(s)	8, 47
FokI	GGATG	2 cut(s)	110, 168
GlaI	GCGC	1 cut(s)	129
HaeII	RGCGCY	1 cut(s)	131
HhaI	GCGC	1 cut(s)	130
Hin1I	GRCGYC	1 cut(s)	128
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HphI	GGTGA	2 cut(s)	28, 34
Hpy166II	GTNNAC	2 cut(s)	42, 121
Hpy188III	TCNNGA	1 cut(s)	76
Hpy8I	GTNNAC	2 cut(s)	42, 121
HpyAV	CCTTC	2 cut(s)	87, 174
HpyF3I	CTNAG	1 cut(s)	114
Hsp92I	GRCGYC	1 cut(s)	128
HspAI	GCGC	1 cut(s)	128
KasI	GGCGCC	1 cut(s)	127
Kzo9I	GATC	1 cut(s)	18
LmnI	GCTCC	2 cut(s)	139, 146
LpnPI	CCDG	5 cut(s)	38, 101, 129, 144, 156
LweI	GCATC	2 cut(s)	88, 190
MalI	GATC	1 cut(s)	20
MboI	GATC	1 cut(s)	18
MboII	GAAGA	1 cut(s)	64
Mly113I	GGCGCC	1 cut(s)	128
MnlI	CCTC	4 cut(s)	78, 147, 170, 183
MseI	TTAA	1 cut(s)	214
MspR9I	CCNGG	1 cut(s)	144
MvaI	CCWGG	1 cut(s)	144
NarI	GGCGCC	1 cut(s)	128
NdeII	GATC	1 cut(s)	18
NlaIV	GGNNCC	1 cut(s)	129
PluTI	GGCGCC	1 cut(s)	131
Psp6I	CCWGG	1 cut(s)	142
PspGI	CCWGG	1 cut(s)	142
PspN4I	GGNNCC	1 cut(s)	129
SaqAI	TTAA	1 cut(s)	214
Sau3AI	GATC	1 cut(s)	18
ScrFI	CCNGG	1 cut(s)	144
SetI	ASST	2 cut(s)	120, 151
SfaNI	GCATC	2 cut(s)	88, 190
SfoI	GGCGCC	1 cut(s)	129
SsiI	CCGC	1 cut(s)	179
SspDI	GGCGCC	1 cut(s)	127
StyD4I	CCNGG	1 cut(s)	142
Tru1I	TTAA	1 cut(s)	214
Tru9I	TTAA	1 cut(s)	214
TspDTI	ATGAA	1 cut(s)	156
XagI	CCTNNNNNAGG	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.