cellular macromolecule catabolic process
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G31335 |
| malus_domestica | MD05G1260300.v1.1 MD10G1239200.v1.1 |
| prunus_persica | Prupe.4G105200_v2.0.a1 |
| pyrus_communis | pycom05g24400 pycom05g24410 pycom10g20020 |
| rosa_chinensis | RchiOBHm_Chr5g0018941 |
| rosa_roxburghii | Rroxscaffold_1G00058930 Rroxscaffold_1G00073930 |
| rosa_samantha | Rh5AG138500 Rh5BG137200 |
| rosa_wichuraiana | Rw5G012270 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 127 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 97, 143 |
| AgsI | TTSAA | 1 cut(s) | 196 |
| AjnI | CCWGG | 1 cut(s) | 142 |
| AluBI | AGCT | 1 cut(s) | 149 |
| AluI | AGCT | 1 cut(s) | 149 |
| AoxI | GGCC | 1 cut(s) | 88 |
| AsuHPI | GGTGA | 2 cut(s) | 28, 34 |
| BanI | GGYRCC | 1 cut(s) | 127 |
| BbvCI | CCTCAGC | 1 cut(s) | 177 |
| BciT130I | CCWGG | 1 cut(s) | 144 |
| Bme1390I | CCNGG | 1 cut(s) | 144 |
| BmiI | GGNNCC | 1 cut(s) | 129 |
| BmrFI | CCNGG | 1 cut(s) | 144 |
| Bpu10I | CCTNAGC | 1 cut(s) | 177 |
| BpuEI | CTTGAG | 1 cut(s) | 99 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 97, 143 |
| BseBI | CCWGG | 1 cut(s) | 144 |
| BseGI | GGATG | 1 cut(s) | 184 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 97, 143 |
| BseMII | CTCAG | 1 cut(s) | 191 |
| BseRI | GAGGAG | 1 cut(s) | 165 |
| BshFI | GGCC | 1 cut(s) | 90 |
| BshNI | GGYRCC | 1 cut(s) | 127 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 97, 143 |
| BsnI | GGCC | 1 cut(s) | 90 |
| Bsp143I | GATC | 1 cut(s) | 18 |
| BspANI | GGCC | 1 cut(s) | 90 |
| BspCNI | CTCAG | 1 cut(s) | 190 |
| BspLI | GGNNCC | 1 cut(s) | 129 |
| BspQI | GCTCTTC | 1 cut(s) | 73 |
| BspT107I | GGYRCC | 1 cut(s) | 127 |
| BssMI | GATC | 1 cut(s) | 18 |
| Bst2UI | CCWGG | 1 cut(s) | 144 |
| Bst6I | CTCTTC | 1 cut(s) | 73 |
| BstDEI | CTNAG | 1 cut(s) | 177 |
| BstF5I | GGATG | 1 cut(s) | 184 |
| BstKTI | GATC | 1 cut(s) | 21 |
| BstMBI | GATC | 1 cut(s) | 18 |
| BstNI | CCWGG | 1 cut(s) | 144 |
| BstSCI | CCNGG | 1 cut(s) | 142 |
| BsuRI | GGCC | 1 cut(s) | 90 |
| BtgZI | GCGATG | 1 cut(s) | 116 |
| BtsCI | GGATG | 1 cut(s) | 184 |
| CviJI | RGCY | 3 cut(s) | 90, 149, 181 |
| CviKI_1 | RGCY | 3 cut(s) | 90, 149, 181 |
| DdeI | CTNAG | 1 cut(s) | 177 |
| DpnI | GATC | 1 cut(s) | 20 |
| DpnII | GATC | 1 cut(s) | 18 |
| Eam1104I | CTCTTC | 1 cut(s) | 73 |
| EarI | CTCTTC | 1 cut(s) | 73 |
| EcoRII | CCWGG | 1 cut(s) | 142 |
| FaiI | YATR | 3 cut(s) | 8, 47, 123 |
| FokI | GGATG | 1 cut(s) | 171 |
| HaeIII | GGCC | 1 cut(s) | 90 |
| HphI | GGTGA | 2 cut(s) | 28, 34 |
| Hpy166II | GTNNAC | 1 cut(s) | 42 |
| Hpy8I | GTNNAC | 1 cut(s) | 42 |
| HpyAV | CCTTC | 1 cut(s) | 177 |
| HpyF3I | CTNAG | 1 cut(s) | 177 |
| Kzo9I | GATC | 1 cut(s) | 18 |
| LguI | GCTCTTC | 1 cut(s) | 73 |
| LmnI | GCTCC | 1 cut(s) | 146 |
| LpnPI | CCDG | 3 cut(s) | 129, 156, 213 |
| MaeIII | GTNAC | 1 cut(s) | 65 |
| MalI | GATC | 1 cut(s) | 20 |
| MboI | GATC | 1 cut(s) | 18 |
| MboII | GAAGA | 1 cut(s) | 90 |
| MnlI | CCTC | 4 cut(s) | 80, 91, 123, 186 |
| MseI | TTAA | 1 cut(s) | 220 |
| MspR9I | CCNGG | 1 cut(s) | 144 |
| MvaI | CCWGG | 1 cut(s) | 144 |
| NdeII | GATC | 1 cut(s) | 18 |
| NlaIV | GGNNCC | 1 cut(s) | 129 |
| PciSI | GCTCTTC | 1 cut(s) | 73 |
| Psp6I | CCWGG | 1 cut(s) | 142 |
| PspGI | CCWGG | 1 cut(s) | 142 |
| PspN4I | GGNNCC | 1 cut(s) | 129 |
| SapI | GCTCTTC | 1 cut(s) | 73 |
| SaqAI | TTAA | 1 cut(s) | 220 |
| Sau3AI | GATC | 1 cut(s) | 18 |
| ScrFI | CCNGG | 1 cut(s) | 144 |
| SetI | ASST | 1 cut(s) | 151 |
| SgeI | CNNG | 8 cut(s) | 65, 73, 96, 120, 128, 155, 156, 212 |
| SmlI | CTYRAG | 1 cut(s) | 114 |
| SmoI | CTYRAG | 1 cut(s) | 114 |
| StyD4I | CCNGG | 1 cut(s) | 142 |
| Tru1I | TTAA | 1 cut(s) | 220 |
| Tru9I | TTAA | 1 cut(s) | 220 |
| TspDTI | ATGAA | 1 cut(s) | 159 |