Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0017553

Physical Location & Seq

Genomic Coordinates Reverse (-)

11253912 .. 11255745

Gene Structure 1834 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G31430.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1713 bp

ATGAACATGAGTTTGTTACAAACTCCATCACTTCTTATGTACAATAAGATGCTCAAATCTCTTGCTGATGGTAAAAGTTTCACGAAAGTTTTGGCTTTGTTCGGTGAATTGCGAGGACAAGGATTGTATCCTGATAATTTCACGTTACCGGTTGTTCTAAAGTCAATTGGTCGTTTGAGGAAGGTTATAGAAGGTGAGAAGGTTCATGGTTATGCTGTGAAAGCTGGGCTTGAGTTCGATTCTTATGTATCTAATTCACTCATGGGAATGTATGCTTCATTGGGTAAGATAGAGATCACACATAAAGTGTTCGATGAAATGCCTCAACGAGATGTTGTTTCTTGGAATGGGTTGATTTCTAGTTATGTTGGTAATGGGAGGTTTGAGGATGCCATTGGTGTGTTTAAGCGGATGAGTCAGGAGAGCAATTTGAAGTTTGATGAAGGTACAATTGTGAGCACTCTTTCGGCTTGTTCGGCTTTGAAGAATCTTGAAATTGGTGAAAGGATTTATAGGTTTGTTGTTACAGAATTTGAAATGAGTGTTAGGATTGGGAATGCGTTGGTGGATATGTTCTGTAAATGTGGGTGTCTCGATAAGGCTAGAGCGGTTTTCGATTCGATGAGAGACAAGAATGTTAAGTGTTGGACTAGTATGGTTTTTGGGTATGTTAGTACTGGTAGGATTGATGAGGCTAGAGTTTTGTTTGAGAGAAGTCCTGTAAAGGATGTTGTTTTGTGGACAGCTATGATGAATGGGTATGTTCAGTTTAACCGGTTTGATGAGGCATTGGAACTGTTCAGGTGCATGCAAACTGCGGGAATTAGGCCGGATAATTTCGTGCTAGTCTCTCTCTTGACAGGTTGCGCGCAAACGGGAGCTTTAGAGCAAGGAAAATGGATTCATGGGTACATAAATGAGAACAGGGTTACAGTAGATAAAGTAGTTGGTACTGCTCTTGTAGACATGTATGCAAAATGTGGATGCATTGAGACAGCTCTAGAGGTTTTCTATGAAATAAAGGAGAGAGACACAGCTTCGTGGACATCACTTATCTACGGTCTTGCGATGAACGGGATGTCAGGAAGAGCGCTGGACTTGTATTACGAAATGGAAAATGTTGGTGTTAGACTAGACGCTATAACATTTGTCGCGGTTTTAACAGCTTGCAATCATGGTGGATTTGTAGCAGAAGGCCGTAAGATTTTCCATTCGATGACCGAAAGACATAACGTCCAGCCTAAATCAGAGCACTGCAGCTGTCTGATTGACCTACTATGCAGAGCTGGTTTGTTAGATGAAGCAGAGGAATTGATAGATAAGATGCGTGGTGAAAGCGATGAAACTCTAGTTCCTGTATACTGTTCTTTACTTAGTGCTGCTAGGAACTATGGGAATGTAAAAATAGCAGAACGGGTAGCGGAAAAGCTTGAGAAAGTGGAAGTAAGTGATTCCAGTGCTCATACTCTGCTTGCAAGTGTATATGCATCTGCTAATAGATGGGAAGATGTAACTAATGTGAGAAGGAAAATGAAAGATTTGGGAATCAGAAAGTTTCCTGGTTGCAGCTCCATCGAGATTGATGGGGTTGGTCATGAGTTTATTGTTGGAGATGATCTATTATCACACCCAAAAATGGATGAGATCAACTCAATGCTGCATCAAACGACAAATTTGATGTTGGATTTGGAACATAAAGAAATTGATAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

570

Amino Acids

63.76

Weight (kDa)

5.61

Isoelectric Point (pI)

33.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	110 - 158	1.8e-06	PPR repeat family
PPR	PF01535	113 - 140	3.1e-06	PPR repeat
PPR_2	PF13041	242 - 290	1.7e-10	PPR repeat family
PPR	PF01535	245 - 275	1.2e-07	PPR repeat
PPR_2	PF13041	344 - 390	1.1e-06	PPR repeat family
PPR_long	PF17177	363 - 485	1.5e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	420 - 443	1e-06	PPR repeat
E_motif	PF20431	464 - 526	3.2e-17	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31430 AT1G31430
fragaria_vesca	FvH4_1g04051
malus_domestica	MD04G1011600.v1.1
prunus_persica	Prupe.7G236400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0089541
rosa_laevigata	RLG00000016038
rosa_multiflora	Rmu_sc0006193.1_g000007
rosa_rugosa	Rorug02G0001500
rosa_samantha	Rh2BG045500 Rh2BG045600 Rh2DG046800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	608
AccI	GTMKAC	2 cut(s)	963, 1359
AccII	CGCG	2 cut(s)	869, 1154
AciI	CCGC	5 cut(s)	409, 608, 818, 1154, 1421
AcsI	RAATTY	2 cut(s)	530, 1672
AfaI	GTAC	5 cut(s)	41, 448, 676, 911, 952
AfeI	AGCGCT	1 cut(s)	1092
AfiI	CCNNNNNNNGG	1 cut(s)	1636
AflIII	ACRYGT	1 cut(s)	966
AgeI	ACCGGT	2 cut(s)	148, 774
AgsI	TTSAA	4 cut(s)	433, 484, 494, 536
AhdI	GACNNNNNGTC	1 cut(s)	1232
AhlI	ACTAGT	1 cut(s)	650
AjnI	CCWGG	1 cut(s)	1558
Alw21I	GWGCWC	3 cut(s)	461, 1254, 1462
Alw26I	GTCTC	5 cut(s)	596, 621, 853, 986, 1023
Aor51HI	AGCGCT	1 cut(s)	1092
AoxI	GGCC	2 cut(s)	827, 1195
ApeKI	GCWGC	4 cut(s)	1257, 1379, 1566, 1657
ApoI	RAATTY	2 cut(s)	530, 1672
AsiGI	ACCGGT	2 cut(s)	148, 774
AspLEI	GCGC	3 cut(s)	869, 871, 1093
AsuHPI	GGTGA	4 cut(s)	116, 206, 512, 1343
BaeI	ACNNNNGTAYC	2 cut(s)	438, 471
Bbv12I	GWGCWC	3 cut(s)	461, 1254, 1462
BbvI	GCAGC	4 cut(s)	1269, 1366, 1578, 1644
BccI	CCATC	5 cut(s)	34, 62, 1494, 1577, 1580
BceAI	ACGGC	1 cut(s)	1182
BcgI	CGANNNNNNTGC	2 cut(s)	1555, 1589
BciT130I	CCWGG	1 cut(s)	1560
BciVI	GTATCC	1 cut(s)	138
BcoDI	GTCTC	5 cut(s)	596, 621, 853, 986, 1023
BcuI	ACTAGT	1 cut(s)	650
BfaI	CTAG	9 cut(s)	360, 603, 651, 696, 845, 1001, 1133, 1349, 1383
BfmI	CTRYAG	1 cut(s)	1255
BfoI	RGCGCY	1 cut(s)	1094
BfuI	GTATCC	1 cut(s)	138
BisI	GCNGC	4 cut(s)	1258, 1380, 1567, 1658
BlsI	GCNGC	4 cut(s)	1259, 1381, 1568, 1659
BmcAI	AGTACT	1 cut(s)	676
Bme1390I	CCNGG	1 cut(s)	1560
BmeRI	GACNNNNNGTC	1 cut(s)	1232
BmrFI	CCNGG	1 cut(s)	1560
BmsI	GCATC	6 cut(s)	39, 379, 974, 1314, 1496, 1669
BplI	GAGNNNNNCTC	2 cut(s)	1634, 1666
BpuEI	CTTGAG	2 cut(s)	251, 1451
BsaBI	GATNNNNATC	1 cut(s)	293
BsaWI	WCCGGW	2 cut(s)	148, 774
Bsc4I	CCNNNNNNNGG	1 cut(s)	1636
Bse118I	RCCGGY	2 cut(s)	148, 774
Bse1I	ACTGG	2 cut(s)	682, 1455
Bse8I	GATNNNNATC	1 cut(s)	293
BseBI	CCWGG	1 cut(s)	1560
BseGI	GGATG	6 cut(s)	394, 417, 733, 989, 1083, 1645
BseJI	GATNNNNATC	1 cut(s)	293
BseLI	CCNNNNNNNGG	1 cut(s)	1636
BseNI	ACTGG	2 cut(s)	682, 1455
BsePI	GCGCGC	1 cut(s)	867
BseXI	GCAGC	4 cut(s)	1269, 1366, 1578, 1644
BseYI	CCCAGC	1 cut(s)	224
Bsh1236I	CGCG	2 cut(s)	869, 1154
BshFI	GGCC	2 cut(s)	829, 1197
BshTI	ACCGGT	2 cut(s)	148, 774
BsiHKAI	GWGCWC	3 cut(s)	461, 1254, 1462
BsiSI	CCGG	3 cut(s)	149, 775, 830
BslI	CCNNNNNNNGG	1 cut(s)	1636
BsmAI	GTCTC	5 cut(s)	596, 621, 853, 986, 1023
BsmI	GAATGC	1 cut(s)	562
BsnI	GGCC	2 cut(s)	829, 1197
Bsp1286I	GDGCHC	3 cut(s)	461, 1254, 1462
Bsp1407I	TGTACA	1 cut(s)	39
Bsp143I	GATC	3 cut(s)	294, 1615, 1644
BspACI	CCGC	5 cut(s)	409, 608, 818, 1154, 1421
BspANI	GGCC	2 cut(s)	829, 1197
BspFNI	CGCG	2 cut(s)	869, 1154
BspHI	TCATGA	1 cut(s)	1594
BspMAI	CTGCAG	1 cut(s)	1259
BspQI	GCTCTTC	1 cut(s)	1081
BsrBI	CCGCTC	1 cut(s)	608
BsrFI	RCCGGY	2 cut(s)	148, 774
BsrGI	TGTACA	1 cut(s)	39
BsrI	ACTGG	2 cut(s)	682, 1455
BssAI	RCCGGY	2 cut(s)	148, 774
BssHII	GCGCGC	1 cut(s)	867
BssMI	GATC	3 cut(s)	294, 1615, 1644
BssNAI	GTATAC	1 cut(s)	1360
Bst1107I	GTATAC	1 cut(s)	1360
Bst2UI	CCWGG	1 cut(s)	1560
Bst4CI	ACNGT	4 cut(s)	798, 934, 1061, 1364
Bst6I	CTCTTC	1 cut(s)	1081
BstAUI	TGTACA	1 cut(s)	39
BstC8I	GCNNGC	4 cut(s)	809, 869, 1168, 1473
BstDEI	CTNAG	1 cut(s)	1373
BstF5I	GGATG	6 cut(s)	394, 417, 733, 989, 1083, 1645
BstFNI	CGCG	2 cut(s)	869, 1154
BstH2I	RGCGCY	1 cut(s)	1094
BstHHI	GCGC	3 cut(s)	869, 871, 1093
BstKTI	GATC	3 cut(s)	297, 1618, 1647
BstMAI	GTCTC	5 cut(s)	596, 621, 853, 986, 1023
BstMBI	GATC	3 cut(s)	294, 1615, 1644
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 476
BstNI	CCWGG	1 cut(s)	1560
BstNSI	RCATGY	2 cut(s)	811, 970
BstSCI	CCNGG	1 cut(s)	1558
BstSFI	CTRYAG	1 cut(s)	1255
BstUI	CGCG	2 cut(s)	869, 1154
BstV1I	GCAGC	4 cut(s)	1269, 1366, 1578, 1644
BstZ17I	GTATAC	1 cut(s)	1360
BsuI	GTATCC	1 cut(s)	138
BsuRI	GGCC	2 cut(s)	829, 1197
BtgZI	GCGATG	2 cut(s)	1082, 1353
BtsCI	GGATG	6 cut(s)	394, 417, 733, 989, 1083, 1645
BtsI	GCAGTG	1 cut(s)	1252
BtsIMutI	CAGTG	2 cut(s)	1252, 1462
Cac8I	GCNNGC	4 cut(s)	809, 869, 1168, 1473
CciI	TCATGA	1 cut(s)	1594
CfoI	GCGC	3 cut(s)	869, 871, 1093
Cfr10I	RCCGGY	2 cut(s)	148, 774
CseI	GACGC	1 cut(s)	1145
Csp6I	GTAC	5 cut(s)	40, 447, 675, 910, 951
CspAI	ACCGGT	2 cut(s)	148, 774
CspCI	CAANNNNNGTGG	2 cut(s)	1159, 1194
CviAII	CATG	8 cut(s)	7, 206, 262, 808, 905, 967, 1175, 1595
CviQI	GTAC	5 cut(s)	40, 447, 675, 910, 951
DdeI	CTNAG	1 cut(s)	1373
DpnI	GATC	3 cut(s)	296, 1617, 1646
DpnII	GATC	3 cut(s)	294, 1615, 1644
DriI	GACNNNNNGTC	1 cut(s)	1232
Eam1104I	CTCTTC	1 cut(s)	1081
Eam1105I	GACNNNNNGTC	1 cut(s)	1232
EarI	CTCTTC	1 cut(s)	1081
Eco47III	AGCGCT	1 cut(s)	1092
EcoRII	CCWGG	1 cut(s)	1558
EcoT22I	ATGCAT	2 cut(s)	989, 1489
FaeI	CATG	8 cut(s)	10, 209, 265, 811, 908, 970, 1178, 1598
FalI	AAGNNNNNCTT	2 cut(s)	213, 245
FatI	CATG	8 cut(s)	6, 205, 261, 807, 904, 966, 1174, 1594
FauI	CCCGC	1 cut(s)	811
FblI	GTMKAC	2 cut(s)	963, 1359
Fnu4HI	GCNGC	4 cut(s)	1258, 1380, 1567, 1658
FokI	GGATG	6 cut(s)	401, 424, 740, 996, 1090, 1652
Fsp4HI	GCNGC	4 cut(s)	1258, 1380, 1567, 1658
FspBI	CTAG	9 cut(s)	360, 603, 651, 696, 845, 1001, 1133, 1349, 1383
GlaI	GCGC	3 cut(s)	868, 870, 1092
GluI	GCNGC	4 cut(s)	1258, 1380, 1567, 1658
GsaI	CCCAGC	1 cut(s)	228
HaeII	RGCGCY	1 cut(s)	1094
HaeIII	GGCC	2 cut(s)	829, 1197
HapII	CCGG	3 cut(s)	149, 775, 830
HgaI	GACGC	1 cut(s)	1145
HhaI	GCGC	3 cut(s)	869, 871, 1093
Hin1II	CATG	8 cut(s)	10, 209, 265, 811, 908, 970, 1178, 1598
Hin6I	GCGC	3 cut(s)	867, 869, 1091
HinP1I	GCGC	3 cut(s)	867, 869, 1091
HindIII	AAGCTT	1 cut(s)	1427
HinfI	GANTC	7 cut(s)	239, 415, 487, 617, 901, 1451, 1545
HpaII	CCGG	3 cut(s)	149, 775, 830
HphI	GGTGA	4 cut(s)	116, 206, 512, 1343
Hpy166II	GTNNAC	4 cut(s)	741, 964, 1044, 1360
Hpy188I	TCNGA	3 cut(s)	1249, 1266, 1550
Hpy8I	GTNNAC	4 cut(s)	741, 964, 1044, 1360
HpyAV	CCTTC	6 cut(s)	175, 185, 193, 437, 1187, 1518
HpyCH4III	ACNGT	4 cut(s)	798, 934, 1061, 1364
HpyCH4IV	ACGT	2 cut(s)	143, 1233
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 476
HpyF3I	CTNAG	1 cut(s)	1373
HpySE526I	ACGT	2 cut(s)	143, 1233
Hsp92II	CATG	8 cut(s)	10, 209, 265, 811, 908, 970, 1178, 1598
HspAI	GCGC	3 cut(s)	867, 869, 1091
Kzo9I	GATC	3 cut(s)	294, 1615, 1644
LguI	GCTCTTC	1 cut(s)	1081
LmnI	GCTCC	2 cut(s)	878, 1574
Lsp1109I	GCAGC	4 cut(s)	1269, 1366, 1578, 1644
LweI	GCATC	6 cut(s)	39, 379, 974, 1314, 1496, 1669
MaeI	CTAG	9 cut(s)	360, 603, 651, 696, 845, 1001, 1133, 1349, 1383
MaeII	ACGT	2 cut(s)	143, 1233
MaeIII	GTNAC	5 cut(s)	15, 144, 523, 928, 1510
MalI	GATC	3 cut(s)	296, 1617, 1646
MbiI	CCGCTC	1 cut(s)	608
MboI	GATC	3 cut(s)	294, 1615, 1644
MboII	GAAGA	3 cut(s)	496, 1098, 1517
MfeI	CAATTG	2 cut(s)	165, 450
MhlI	GDGCHC	3 cut(s)	461, 1254, 1462
MlyI	GAGTC	1 cut(s)	424
MmeI	TCCRAC	3 cut(s)	626, 1588, 1662
MnlI	CCTC	9 cut(s)	107, 171, 333, 372, 379, 685, 778, 997, 1300
Mph1103I	ATGCAT	2 cut(s)	989, 1489
MseI	TTAA	4 cut(s)	405, 639, 771, 1160
MslI	CAYNNNNRTG	3 cut(s)	210, 266, 398
MspA1I	CMGCKG	1 cut(s)	1260
MspI	CCGG	3 cut(s)	149, 775, 830
MspR9I	CCNGG	1 cut(s)	1560
MunI	CAATTG	2 cut(s)	165, 450
Mva1269I	GAATGC	1 cut(s)	562
MvaI	CCWGG	1 cut(s)	1560
MvnI	CGCG	2 cut(s)	869, 1154
MwoI	GCNNNNNNNGC	2 cut(s)	221, 476
NdeII	GATC	3 cut(s)	294, 1615, 1644
NlaIII	CATG	8 cut(s)	10, 209, 265, 811, 908, 970, 1178, 1598
NsiI	ATGCAT	2 cut(s)	989, 1489
NspI	RCATGY	2 cut(s)	811, 970
PaeI	GCATGC	1 cut(s)	811
PagI	TCATGA	1 cut(s)	1594
PauI	GCGCGC	1 cut(s)	867
PciI	ACATGT	1 cut(s)	966
PciSI	GCTCTTC	1 cut(s)	1081
PctI	GAATGC	1 cut(s)	562
PfeI	GAWTC	6 cut(s)	239, 487, 617, 901, 1451, 1545
PinAI	ACCGGT	2 cut(s)	148, 774
PkrI	GCNGC	4 cut(s)	1259, 1381, 1568, 1659
PleI	GAGTC	1 cut(s)	423
PpsI	GAGTC	1 cut(s)	423
PscI	ACATGT	1 cut(s)	966
Psp6I	CCWGG	1 cut(s)	1558
PspFI	CCCAGC	1 cut(s)	224
PspGI	CCWGG	1 cut(s)	1558
PstI	CTGCAG	1 cut(s)	1259
PteI	GCGCGC	1 cut(s)	867
PvuII	CAGCTG	1 cut(s)	1260
RsaI	GTAC	5 cut(s)	41, 448, 676, 911, 952
RsaNI	GTAC	5 cut(s)	40, 447, 675, 910, 951
RseI	CAYNNNNRTG	3 cut(s)	210, 266, 398
SapI	GCTCTTC	1 cut(s)	1081
SaqAI	TTAA	4 cut(s)	405, 639, 771, 1160
SatI	GCNGC	4 cut(s)	1258, 1380, 1567, 1658
Sau3AI	GATC	3 cut(s)	294, 1615, 1644
ScaI	AGTACT	1 cut(s)	676
SchI	GAGTC	1 cut(s)	424
ScrFI	CCNGG	1 cut(s)	1560
SduI	GDGCHC	3 cut(s)	461, 1254, 1462
SfaNI	GCATC	6 cut(s)	39, 379, 974, 1314, 1496, 1669
SfcI	CTRYAG	1 cut(s)	1255
SmiMI	CAYNNNNRTG	3 cut(s)	210, 266, 398
SmlI	CTYRAG	2 cut(s)	230, 1430
SmoI	CTYRAG	2 cut(s)	230, 1430
SpeI	ACTAGT	1 cut(s)	650
SphI	GCATGC	1 cut(s)	811
SsiI	CCGC	5 cut(s)	409, 608, 818, 1154, 1421
SspMI	CTAG	9 cut(s)	360, 603, 651, 696, 845, 1001, 1133, 1349, 1383
StyD4I	CCNGG	1 cut(s)	1558
TaaI	ACNGT	4 cut(s)	798, 934, 1061, 1364
TaiI	ACGT	2 cut(s)	146, 1236
TaqI	TCGA	7 cut(s)	237, 312, 594, 615, 620, 1214, 1575
TaqII	GACCGA	1 cut(s)	1235
TatI	WGTACW	2 cut(s)	39, 674
TfiI	GAWTC	6 cut(s)	239, 487, 617, 901, 1451, 1545
Tru1I	TTAA	4 cut(s)	405, 639, 771, 1160
Tru9I	TTAA	4 cut(s)	405, 639, 771, 1160
TscAI	CASTG	2 cut(s)	1259, 1462
TseI	GCWGC	4 cut(s)	1257, 1379, 1566, 1657
TspRI	CASTG	2 cut(s)	1259, 1462
XapI	RAATTY	2 cut(s)	530, 1672
XbaI	TCTAGA	1 cut(s)	1000
XceI	RCATGY	2 cut(s)	811, 970
XmiI	GTMKAC	2 cut(s)	963, 1359
XspI	CTAG	9 cut(s)	360, 603, 651, 696, 845, 1001, 1133, 1349, 1383
ZrmI	AGTACT	1 cut(s)	676
Zsp2I	ATGCAT	2 cut(s)	989, 1489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.