Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0017553

Physical Location & Seq

Genomic Coordinates Forward (+)

20523239 .. 20524872

Gene Structure 1634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G236400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1542 bp

ATGAACCAGCTCAAACAGATCCAGTCCCAGATGTTTCTTCTTGGTCTACACCAAGACAGATTCACCCTCAGCAAGCTCATGGCCTTTTGCACGGACCCATCTCTTGGAAACTTGTATTGCGCTGAGAAAGTCTTCCATTACATCCAAAACCCATGTTTGTTCGTTTACAATAGAATGATTAAAGCGTTTGCTAAAAGGGGTAGTTTCAGAAGTGCCCTTGAGCTCTTTCGGCTGCTAAGGGAAGAGGGCTTGTGGCCGGATAGTTTCACGTACCCATTTGTTTTTAAAGCCATTGGATGCTTGAGAGAGCCTCGTGAAGGAGCAAAGGTTCATGGGCTTGTGGTAAAAACTGGCTTTGAGTTTGATGCGTATGTATGTAACTCGCTCATTGACATCAATTGTTTGACGAAGCCTGAGAGAAATTGGCTTTGTTGGAATGTTACGATTTCGGGGTATGTTAGGTGCAGGAGGTTTGAGGATGCTTTTGATATGTTCCAGCGGATGCGATGTGAGAGCAATAAGAAGCCTGATGAGGCTACGGTGGTAAGCACCCTTTCGGCTTGCACAGCATTGAAAAATTTGGAGCTTGGTAAACAAATTCACGACTATGTTAAAAGTGAGCTTAAATTGACTACTATAATCGGAAATGCATTGTTGAACATGTATGCTAAGTGTGGTTGTTTGAATGAAGGCCGGCGAATTTTTGATGAGATACCATCGAAAAACGTGATCTGTTGTACGAGTATGGTGTCTGGGTATGATGCTGTTCTATGGACCGCTATGATTAATGGGTATGCGCAATATAACCGTTTTGATGAGGCCGTGGCTCTATTCCAAGAGATGCAAATTAGAAGAGTTAAAGGAGATAAATTTACAGCGGTTACTCTCCTTACAGGCTGTGCTCAGTCGGGAGCATTAGAGCAAGGGAAATGGATTCACAGGTACATGGAGGAAAACGGAATTAAGATTGATGCACCTGCTCTTATTGAAATGTATGCAAAATGTGGGTGCATAGACAAATCCTTGGAGATTTTCAATGGATTAAGGGAAAAAGATGCAGCCTGTTGGACTTCAATCGTTTGTGGGCTTGCAAAGAATGGCAAGGCAAGCAAAGCAGTCGAGTTGTTCTCAGAAATGATACAGATTGGCATCAACCCTGATGACATTAATTTCATTGCTGTTCTAAGGGCTTGCAGTCATGGAGGGTTGGTTGACGAGGGCCGTAAGTTCTTCAACTCCATGAGAAAGATGTATGAAATTGAGCCAAAGTTAGAACACTATGCTTGTCTGGTTGACCTCCTTGGTCGAGCTGGACTGTTAGATGAAGCAGAGGAGATGATAGAGCGGGTTCCAAGTGAAAACAAGGAGATTATGATTCCACTTTATGGTGCTTTGCTTAGTGCTTGCAGAATCCATGGCAATGTTGAGATGGGTGAAAGAGTGGCTAAAAGGCTAGCGGATATTGAATCAAGCGGCTCTAGTGTTCACACGCTTCTAGCCAATACGTACGCCTCTGCCGACAGATGGGAAGATGTAACAAAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

514

Amino Acids

58.13

Weight (kDa)

7.05

Isoelectric Point (pI)

44.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31430 AT1G31430
fragaria_vesca	FvH4_1g04051
malus_domestica	MD04G1011600.v1.1
prunus_persica	Prupe.7G236400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0089541
rosa_laevigata	RLG00000016038
rosa_multiflora	Rmu_sc0006193.1_g000007
rosa_rugosa	Rorug02G0001500
rosa_samantha	Rh2BG045500 Rh2BG045600 Rh2DG046800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	985
Acc16I	TGCGCA	1 cut(s)	798
Acc36I	ACCTGC	1 cut(s)	985
AccB7I	CCANNNNNTGG	2 cut(s)	104, 1385
AccBSI	CCGCTC	1 cut(s)	1345
AccI	GTMKAC	1 cut(s)	46
AciI	CCGC	6 cut(s)	499, 777, 878, 1345, 1457, 1473
AclWI	GGATC	1 cut(s)	13
AcoI	YGGCCR	1 cut(s)	254
AcsI	RAATTY	4 cut(s)	577, 597, 699, 869
AfaI	GTAC	4 cut(s)	272, 739, 944, 1508
AfiI	CCNNNNNNNGG	4 cut(s)	104, 317, 1385, 1524
AflIII	ACRYGT	1 cut(s)	660
AgsI	TTSAA	8 cut(s)	574, 658, 685, 989, 1036, 1074, 1234, 1466
AloI	GAACNNNNNNTCC	2 cut(s)	312, 344
AluBI	AGCT	6 cut(s)	10, 76, 223, 586, 622, 1310
AluI	AGCT	6 cut(s)	10, 76, 223, 586, 622, 1310
Alw21I	GWGCWC	2 cut(s)	225, 904
AlwI	GGATC	1 cut(s)	13
AoxI	GGCC	5 cut(s)	81, 254, 691, 819, 1219
ApeKI	GCWGC	2 cut(s)	232, 1058
ApoI	RAATTY	4 cut(s)	577, 597, 699, 869
AseI	ATTAAT	2 cut(s)	786, 1167
Asp700I	GAANNNNTTC	1 cut(s)	131
AspLEI	GCGC	2 cut(s)	122, 799
AspS9I	GGNCC	3 cut(s)	94, 774, 1219
AsuHPI	GGTGA	2 cut(s)	55, 1445
AsuNHI	GCTAGC	1 cut(s)	1453
AvaII	GGWCC	2 cut(s)	94, 774
BaeGI	GKGCMC	1 cut(s)	217
BanII	GRGCYC	1 cut(s)	225
BauI	CACGAG	1 cut(s)	312
BbsI	GAAGAC	1 cut(s)	124
Bbv12I	GWGCWC	2 cut(s)	225, 904
BbvCI	CCTCAGC	1 cut(s)	68
BbvI	GCAGC	2 cut(s)	219, 1070
BccI	CCATC	4 cut(s)	106, 724, 1423, 1518
BceAI	ACGGC	2 cut(s)	806, 1206
BcgI	CGANNNNNNTGC	2 cut(s)	1099, 1133
BfaI	CTAG	3 cut(s)	1454, 1479, 1496
BfuAI	ACCTGC	1 cut(s)	985
BisI	GCNGC	3 cut(s)	233, 1059, 1474
BlsI	GCNGC	3 cut(s)	234, 1060, 1475
Bme18I	GGWCC	2 cut(s)	94, 774
BmgT120I	GGNCC	3 cut(s)	94, 774, 1219
BmiI	GGNNCC	2 cut(s)	96, 1350
BmsI	GCATC	9 cut(s)	287, 355, 469, 492, 751, 831, 961, 1045, 1158
BmtI	GCTAGC	1 cut(s)	1457
BpiI	GAAGAC	1 cut(s)	124
BplI	GAGNNNNNCTC	4 cut(s)	295, 327, 1112, 1144
Bpu10I	CCTNAGC	2 cut(s)	68, 236
BpuEI	CTTGAG	2 cut(s)	239, 322
BsaAI	YACGTR	2 cut(s)	270, 1506
BsaBI	GATNNNNATC	1 cut(s)	1148
BsaJI	CCNNGG	4 cut(s)	822, 1023, 1300, 1414
BsaXI	ACNNNNNCTCC	4 cut(s)	312, 342, 1194, 1224
Bsc4I	CCNNNNNNNGG	4 cut(s)	104, 317, 1385, 1524
Bse118I	RCCGGY	1 cut(s)	693
Bse1I	ACTGG	2 cut(s)	22, 355
Bse3DI	GCAATG	2 cut(s)	1173, 1426
Bse8I	GATNNNNATC	1 cut(s)	1148
BseDI	CCNNGG	4 cut(s)	822, 1023, 1300, 1414
BseGI	GGATG	4 cut(s)	141, 302, 484, 507
BseJI	GATNNNNATC	1 cut(s)	1148
BseLI	CCNNNNNNNGG	4 cut(s)	104, 317, 1385, 1524
BseMI	GCAATG	2 cut(s)	1173, 1426
BseMII	CTCAG	5 cut(s)	82, 114, 405, 917, 1143
BseNI	ACTGG	2 cut(s)	22, 355
BseRI	GAGGAG	1 cut(s)	1346
BseSI	GKGCMC	1 cut(s)	217
BseXI	GCAGC	2 cut(s)	219, 1070
BsgI	GTGCAG	1 cut(s)	484
BshFI	GGCC	5 cut(s)	83, 256, 693, 821, 1221
BsiHKAI	GWGCWC	2 cut(s)	225, 904
BsiSI	CCGG	2 cut(s)	257, 694
BsiWI	CGTACG	1 cut(s)	1506
BslFI	GGGAC	1 cut(s)	10
BslI	CCNNNNNNNGG	4 cut(s)	104, 317, 1385, 1524
BsmFI	GGGAC	1 cut(s)	10
BsnI	GGCC	5 cut(s)	83, 256, 693, 821, 1221
Bsp1286I	GDGCHC	3 cut(s)	217, 225, 904
Bsp143I	GATC	2 cut(s)	18, 729
Bsp19I	CCATGG	1 cut(s)	1414
BspACI	CCGC	6 cut(s)	499, 777, 878, 1345, 1457, 1473
BspANI	GGCC	5 cut(s)	83, 256, 693, 821, 1221
BspCNI	CTCAG	5 cut(s)	81, 115, 406, 916, 1142
BspLI	GGNNCC	2 cut(s)	96, 1350
BspMI	ACCTGC	1 cut(s)	985
BspOI	GCTAGC	1 cut(s)	1457
BspPI	GGATC	1 cut(s)	13
BsrBI	CCGCTC	1 cut(s)	1345
BsrDI	GCAATG	2 cut(s)	1173, 1426
BsrFI	RCCGGY	1 cut(s)	693
BsrI	ACTGG	2 cut(s)	22, 355
BssAI	RCCGGY	1 cut(s)	693
BssECI	CCNNGG	4 cut(s)	822, 1023, 1300, 1414
BssMI	GATC	2 cut(s)	18, 729
BssSI	CACGAG	1 cut(s)	312
BssT1I	CCWWGG	3 cut(s)	1023, 1300, 1414
Bst2BI	CACGAG	1 cut(s)	312
Bst4CI	ACNGT	3 cut(s)	541, 809, 1317
Bst6I	CTCTTC	2 cut(s)	237, 847
BstBAI	YACGTR	2 cut(s)	270, 1506
BstC8I	GCNNGC	8 cut(s)	74, 562, 695, 1089, 1108, 1192, 1405, 1455
BstDEI	CTNAG	9 cut(s)	68, 123, 236, 414, 669, 903, 1129, 1184, 1397
BstDSI	CCRYGG	2 cut(s)	822, 1414
BstENI	CCTNNNNNAGG	1 cut(s)	315
BstF5I	GGATG	4 cut(s)	141, 302, 484, 507
BstHHI	GCGC	2 cut(s)	122, 799
BstKTI	GATC	2 cut(s)	21, 732
BstMBI	GATC	2 cut(s)	18, 729
BstMWI	GCNNNNNNNGC	4 cut(s)	229, 566, 1107, 1112
BstNSI	RCATGY	1 cut(s)	664
BstSLI	GKGCMC	1 cut(s)	217
BstSNI	TACGTA	1 cut(s)	1506
BstV1I	GCAGC	2 cut(s)	219, 1070
BstV2I	GAAGAC	1 cut(s)	124
BstX2I	RGATCY	1 cut(s)	18
BstYI	RGATCY	1 cut(s)	18
BsuRI	GGCC	5 cut(s)	83, 256, 693, 821, 1221
BtgI	CCRYGG	2 cut(s)	822, 1414
BtgZI	GCGATG	1 cut(s)	520
BtsCI	GGATG	4 cut(s)	141, 302, 484, 507
BveI	ACCTGC	1 cut(s)	985
Cac8I	GCNNGC	8 cut(s)	74, 562, 695, 1089, 1108, 1192, 1405, 1455
CfoI	GCGC	2 cut(s)	122, 799
Cfr10I	RCCGGY	1 cut(s)	693
Cfr13I	GGNCC	3 cut(s)	94, 774, 1219
Csp6I	GTAC	4 cut(s)	271, 738, 943, 1507
CviAII	CATG	8 cut(s)	79, 153, 332, 661, 946, 1199, 1240, 1415
CviQI	GTAC	4 cut(s)	271, 738, 943, 1507
DdeI	CTNAG	9 cut(s)	68, 123, 236, 414, 669, 903, 1129, 1184, 1397
DpnI	GATC	2 cut(s)	20, 731
DpnII	GATC	2 cut(s)	18, 729
DraI	TTTAAA	1 cut(s)	286
EaeI	YGGCCR	1 cut(s)	254
Eam1104I	CTCTTC	2 cut(s)	237, 847
EarI	CTCTTC	2 cut(s)	237, 847
Ecl136II	GAGCTC	1 cut(s)	223
Eco105I	TACGTA	1 cut(s)	1506
Eco130I	CCWWGG	3 cut(s)	1023, 1300, 1414
Eco24I	GRGCYC	1 cut(s)	225
Eco47I	GGWCC	2 cut(s)	94, 774
Eco53kI	GAGCTC	1 cut(s)	223
EcoICRI	GAGCTC	1 cut(s)	223
EcoNI	CCTNNNNNAGG	1 cut(s)	315
EcoT14I	CCWWGG	3 cut(s)	1023, 1300, 1414
EcoT22I	ATGCAT	1 cut(s)	652
EcoT38I	GRGCYC	1 cut(s)	225
ErhI	CCWWGG	3 cut(s)	1023, 1300, 1414
FaeI	CATG	8 cut(s)	82, 156, 335, 664, 949, 1202, 1243, 1418
FaqI	GGGAC	1 cut(s)	10
FatI	CATG	8 cut(s)	78, 152, 331, 660, 945, 1198, 1239, 1414
FauI	CCCGC	1 cut(s)	1338
FblI	GTMKAC	1 cut(s)	46
Fnu4HI	GCNGC	3 cut(s)	233, 1059, 1474
FokI	GGATG	4 cut(s)	128, 309, 491, 514
FriOI	GRGCYC	1 cut(s)	225
Fsp4HI	GCNGC	3 cut(s)	233, 1059, 1474
FspBI	CTAG	3 cut(s)	1454, 1479, 1496
FspI	TGCGCA	1 cut(s)	798
GlaI	GCGC	2 cut(s)	121, 798
GluI	GCNGC	3 cut(s)	233, 1059, 1474
HaeIII	GGCC	5 cut(s)	83, 256, 693, 821, 1221
HapII	CCGG	2 cut(s)	257, 694
HhaI	GCGC	2 cut(s)	122, 799
Hin1II	CATG	8 cut(s)	82, 156, 335, 664, 949, 1202, 1243, 1418
Hin6I	GCGC	2 cut(s)	120, 797
HinP1I	GCGC	2 cut(s)	120, 797
HincII	GTYRAC	2 cut(s)	1213, 1294
HindII	GTYRAC	2 cut(s)	1213, 1294
HinfI	GANTC	5 cut(s)	60, 934, 1375, 1410, 1466
HpaII	CCGG	2 cut(s)	257, 694
HphI	GGTGA	2 cut(s)	55, 1445
Hpy166II	GTNNAC	6 cut(s)	47, 166, 593, 1213, 1294, 1486
Hpy188I	TCNGA	3 cut(s)	209, 644, 1132
Hpy188III	TCNNGA	3 cut(s)	314, 602, 909
Hpy8I	GTNNAC	6 cut(s)	47, 166, 593, 1213, 1294, 1486
HpyAV	CCTTC	2 cut(s)	311, 683
HpyCH4III	ACNGT	3 cut(s)	541, 809, 1317
HpyCH4IV	ACGT	3 cut(s)	269, 726, 1505
HpyF10VI	GCNNNNNNNGC	4 cut(s)	229, 566, 1107, 1112
HpyF3I	CTNAG	9 cut(s)	68, 123, 236, 414, 669, 903, 1129, 1184, 1397
HpySE526I	ACGT	3 cut(s)	269, 726, 1505
Hsp92II	CATG	8 cut(s)	82, 156, 335, 664, 949, 1202, 1243, 1418
HspAI	GCGC	2 cut(s)	120, 797
KroI	GCCGGC	1 cut(s)	693
KroNI	GCCGGC	1 cut(s)	695
Kzo9I	GATC	2 cut(s)	18, 729
LmnI	GCTCC	3 cut(s)	320, 583, 911
Lsp1109I	GCAGC	2 cut(s)	219, 1070
LweI	GCATC	9 cut(s)	287, 355, 469, 492, 751, 831, 961, 1045, 1158
MaeI	CTAG	3 cut(s)	1454, 1479, 1496
MaeII	ACGT	3 cut(s)	269, 726, 1505
MaeIII	GTNAC	4 cut(s)	377, 439, 880, 1534
MalI	GATC	2 cut(s)	20, 731
MbiI	CCGCTC	1 cut(s)	1345
MboI	GATC	2 cut(s)	18, 729
MboII	GAAGA	6 cut(s)	29, 124, 254, 864, 1222, 1541
MfeI	CAATTG	1 cut(s)	397
MflI	RGATCY	1 cut(s)	18
MhlI	GDGCHC	3 cut(s)	217, 225, 904
MmeI	TCCRAC	2 cut(s)	413, 1046
Mph1103I	ATGCAT	1 cut(s)	652
MroNI	GCCGGC	1 cut(s)	693
MroXI	GAANNNNTTC	1 cut(s)	131
MseI	TTAA	9 cut(s)	180, 285, 612, 624, 786, 858, 963, 1043, 1167
MslI	CAYNNNNRTG	2 cut(s)	606, 1419
MspA1I	CMGCKG	2 cut(s)	499, 878
MspI	CCGG	2 cut(s)	257, 694
MunI	CAATTG	1 cut(s)	397
MwoI	GCNNNNNNNGC	4 cut(s)	229, 566, 1107, 1112
NaeI	GCCGGC	1 cut(s)	695
NcoI	CCATGG	1 cut(s)	1414
NdeII	GATC	2 cut(s)	18, 729
NgoMIV	GCCGGC	1 cut(s)	693
NheI	GCTAGC	1 cut(s)	1453
NlaIII	CATG	8 cut(s)	82, 156, 335, 664, 949, 1202, 1243, 1418
NlaIV	GGNNCC	2 cut(s)	96, 1350
NsbI	TGCGCA	1 cut(s)	798
NsiI	ATGCAT	1 cut(s)	652
NspI	RCATGY	1 cut(s)	664
PaqCI	CACCTGC	1 cut(s)	985
PciI	ACATGT	1 cut(s)	660
PcsI	WCGNNNNNNNCGW	1 cut(s)	1515
PdiI	GCCGGC	1 cut(s)	695
PdmI	GAANNNNTTC	1 cut(s)	131
PfeI	GAWTC	5 cut(s)	60, 934, 1375, 1410, 1466
Pfl23II	CGTACG	1 cut(s)	1506
PflMI	CCANNNNNTGG	2 cut(s)	104, 1385
PkrI	GCNGC	3 cut(s)	234, 1060, 1475
Ppu21I	YACGTR	2 cut(s)	270, 1506
PscI	ACATGT	1 cut(s)	660
PshBI	ATTAAT	2 cut(s)	786, 1167
Psp124BI	GAGCTC	1 cut(s)	225
PspLI	CGTACG	1 cut(s)	1506
PspN4I	GGNNCC	2 cut(s)	96, 1350
PspPI	GGNCC	3 cut(s)	94, 774, 1219
PsuI	RGATCY	1 cut(s)	18
RsaI	GTAC	4 cut(s)	272, 739, 944, 1508
RsaNI	GTAC	4 cut(s)	271, 738, 943, 1507
RseI	CAYNNNNRTG	2 cut(s)	606, 1419
SacI	GAGCTC	1 cut(s)	225
SaqAI	TTAA	9 cut(s)	180, 285, 612, 624, 786, 858, 963, 1043, 1167
SatI	GCNGC	3 cut(s)	233, 1059, 1474
Sau3AI	GATC	2 cut(s)	18, 729
Sau96I	GGNCC	3 cut(s)	94, 774, 1219
SduI	GDGCHC	3 cut(s)	217, 225, 904
SfaNI	GCATC	9 cut(s)	287, 355, 469, 492, 751, 831, 961, 1045, 1158
SinI	GGWCC	2 cut(s)	94, 774
SmiMI	CAYNNNNRTG	2 cut(s)	606, 1419
SmlI	CTYRAG	2 cut(s)	218, 301
SmoI	CTYRAG	2 cut(s)	218, 301
SnaBI	TACGTA	1 cut(s)	1506
SsiI	CCGC	6 cut(s)	499, 777, 878, 1345, 1457, 1473
SspMI	CTAG	3 cut(s)	1454, 1479, 1496
SstI	GAGCTC	1 cut(s)	225
StyI	CCWWGG	3 cut(s)	1023, 1300, 1414
TaaI	ACNGT	3 cut(s)	541, 809, 1317
TaiI	ACGT	3 cut(s)	272, 729, 1508
TaqI	TCGA	3 cut(s)	719, 1119, 1306
TauI	GCSGC	1 cut(s)	1476
TfiI	GAWTC	5 cut(s)	60, 934, 1375, 1410, 1466
Tru1I	TTAA	9 cut(s)	180, 285, 612, 624, 786, 858, 963, 1043, 1167
Tru9I	TTAA	9 cut(s)	180, 285, 612, 624, 786, 858, 963, 1043, 1167
TseI	GCWGC	2 cut(s)	232, 1058
TspDTI	ATGAA	6 cut(s)	17, 320, 702, 1162, 1269, 1338
TspGWI	ACGGA	2 cut(s)	107, 972
Van91I	CCANNNNNTGG	2 cut(s)	104, 1385
VpaK11BI	GGWCC	2 cut(s)	94, 774
VspI	ATTAAT	2 cut(s)	786, 1167
XagI	CCTNNNNNAGG	1 cut(s)	315
XapI	RAATTY	4 cut(s)	577, 597, 699, 869
XceI	RCATGY	1 cut(s)	664
XmiI	GTMKAC	1 cut(s)	46
XmnI	GAANNNNTTC	1 cut(s)	131
XspI	CTAG	3 cut(s)	1454, 1479, 1496
Zsp2I	ATGCAT	1 cut(s)	652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.