Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0017553

Physical Location & Seq

Genomic Coordinates Forward (+)

1322640 .. 1322906

Gene Structure 267 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1011600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGATTTTCTGCCCCAACCCATCTCTCGGAAACTTTGATTACGCCGAGAAAGTCTTCCGTTTCATCAAAGATCCGTGCTTTTTTGTTTACGATGTAATGATCAAGGCGTTTGCCAAAAGGAGTAGTTTCAGAAGCGCCGTTGAGCTCTTCCGGCGGCTGAGGGAGGAGGGATTGTGCCCCTATAATTTTACCTACCCATTTGTTTTAAAGCCATTGGATGCTTGGGAGAGGTTCGTGAAGGTGAAAAGGTTCATGTGTTTGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

89

Amino Acids

10.68

Weight (kDa)

9.39

Isoelectric Point (pI)

50.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31430 AT1G31430
fragaria_vesca	FvH4_1g04051
malus_domestica	MD04G1011600.v1.1
prunus_persica	Prupe.7G236400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0089541
rosa_laevigata	RLG00000016038
rosa_multiflora	Rmu_sc0006193.1_g000007
rosa_rugosa	Rorug02G0001500
rosa_samantha	Rh2BG045500 Rh2BG045600 Rh2DG046800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	154
AclWI	GGATC	1 cut(s)	65
AfiI	CCNNNNNNNGG	1 cut(s)	26
AluBI	AGCT	1 cut(s)	145
AluI	AGCT	1 cut(s)	145
Alw21I	GWGCWC	1 cut(s)	147
AlwI	GGATC	1 cut(s)	65
Asp700I	GAANNNNTTC	2 cut(s)	53, 248
AspLEI	GCGC	1 cut(s)	137
AsuHPI	GGTGA	1 cut(s)	253
BaeGI	GKGCMC	1 cut(s)	179
BanII	GRGCYC	1 cut(s)	147
BbsI	GAAGAC	1 cut(s)	46
Bbv12I	GWGCWC	1 cut(s)	147
BbvCI	CCTCAGC	1 cut(s)	158
BccI	CCATC	1 cut(s)	28
BceAI	ACGGC	1 cut(s)	122
BclI	TGATCA	1 cut(s)	99
BfoI	RGCGCY	1 cut(s)	138
BisI	GCNGC	1 cut(s)	155
BlsI	GCNGC	1 cut(s)	156
BmsI	GCATC	1 cut(s)	208
BpiI	GAAGAC	1 cut(s)	46
Bpu10I	CCTNAGC	1 cut(s)	158
BsaXI	ACNNNNNCTCC	2 cut(s)	158, 188
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
BseGI	GGATG	1 cut(s)	223
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseMII	CTCAG	1 cut(s)	149
BseRI	GAGGAG	1 cut(s)	179
BseSI	GKGCMC	1 cut(s)	179
BsiHKAI	GWGCWC	1 cut(s)	147
BsiSI	CCGG	1 cut(s)	151
BslI	CCNNNNNNNGG	1 cut(s)	26
Bsp1286I	GDGCHC	2 cut(s)	147, 179
Bsp143I	GATC	2 cut(s)	70, 99
BspACI	CCGC	1 cut(s)	154
BspCNI	CTCAG	1 cut(s)	150
BspPI	GGATC	1 cut(s)	65
BspQI	GCTCTTC	1 cut(s)	152
BssMI	GATC	2 cut(s)	70, 99
Bst6I	CTCTTC	1 cut(s)	152
BstDEI	CTNAG	1 cut(s)	158
BstF5I	GGATG	1 cut(s)	223
BstH2I	RGCGCY	1 cut(s)	138
BstHHI	GCGC	1 cut(s)	137
BstKTI	GATC	2 cut(s)	73, 102
BstMBI	GATC	2 cut(s)	70, 99
BstMWI	GCNNNNNNNGC	1 cut(s)	151
BstSLI	GKGCMC	1 cut(s)	179
BstV2I	GAAGAC	1 cut(s)	46
BstX2I	RGATCY	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	70
BtsCI	GGATG	1 cut(s)	223
CfoI	GCGC	1 cut(s)	137
CviAII	CATG	1 cut(s)	253
CviJI	RGCY	3 cut(s)	145, 157, 211
CviKI_1	RGCY	3 cut(s)	145, 157, 211
DdeI	CTNAG	1 cut(s)	158
DpnI	GATC	2 cut(s)	72, 101
DpnII	GATC	2 cut(s)	70, 99
DraI	TTTAAA	1 cut(s)	207
Eam1104I	CTCTTC	1 cut(s)	152
EarI	CTCTTC	1 cut(s)	152
Ecl136II	GAGCTC	1 cut(s)	145
Eco24I	GRGCYC	1 cut(s)	147
Eco53kI	GAGCTC	1 cut(s)	145
EcoICRI	GAGCTC	1 cut(s)	145
EcoT38I	GRGCYC	1 cut(s)	147
FaeI	CATG	1 cut(s)	256
FaiI	YATR	2 cut(s)	183, 254
FatI	CATG	1 cut(s)	252
FbaI	TGATCA	1 cut(s)	99
Fnu4HI	GCNGC	1 cut(s)	155
FokI	GGATG	1 cut(s)	230
FriOI	GRGCYC	1 cut(s)	147
Fsp4HI	GCNGC	1 cut(s)	155
GlaI	GCGC	1 cut(s)	136
GluI	GCNGC	1 cut(s)	155
HaeII	RGCGCY	1 cut(s)	138
HapII	CCGG	1 cut(s)	151
HhaI	GCGC	1 cut(s)	137
Hin1II	CATG	1 cut(s)	256
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
HpaII	CCGG	1 cut(s)	151
HphI	GGTGA	1 cut(s)	253
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	2 cut(s)	29, 131
Hpy188III	TCNNGA	1 cut(s)	235
Hpy8I	GTNNAC	1 cut(s)	88
HpyAV	CCTTC	1 cut(s)	232
HpyF10VI	GCNNNNNNNGC	1 cut(s)	151
HpyF3I	CTNAG	1 cut(s)	158
Hsp92II	CATG	1 cut(s)	256
HspAI	GCGC	1 cut(s)	135
Ksp22I	TGATCA	1 cut(s)	99
Kzo9I	GATC	2 cut(s)	70, 99
LguI	GCTCTTC	1 cut(s)	152
LpnPI	CCDG	1 cut(s)	164
LweI	GCATC	1 cut(s)	208
MalI	GATC	2 cut(s)	72, 101
MboI	GATC	2 cut(s)	70, 99
MboII	GAAGA	2 cut(s)	46, 139
MflI	RGATCY	1 cut(s)	70
MhlI	GDGCHC	2 cut(s)	147, 179
MluCI	AATT	1 cut(s)	184
MnlI	CCTC	4 cut(s)	153, 157, 160, 222
MroXI	GAANNNNTTC	2 cut(s)	53, 248
MseI	TTAA	1 cut(s)	206
MspI	CCGG	1 cut(s)	151
MwoI	GCNNNNNNNGC	1 cut(s)	151
NdeII	GATC	2 cut(s)	70, 99
NlaIII	CATG	1 cut(s)	256
NmeAIII	GCCGAG	1 cut(s)	70
PciSI	GCTCTTC	1 cut(s)	152
PdmI	GAANNNNTTC	2 cut(s)	53, 248
PkrI	GCNGC	1 cut(s)	156
Psp124BI	GAGCTC	1 cut(s)	147
PsuI	RGATCY	1 cut(s)	70
SacI	GAGCTC	1 cut(s)	147
SapI	GCTCTTC	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	206
SatI	GCNGC	1 cut(s)	155
Sau3AI	GATC	2 cut(s)	70, 99
SduI	GDGCHC	2 cut(s)	147, 179
SetI	ASST	5 cut(s)	147, 194, 233, 243, 251
SfaNI	GCATC	1 cut(s)	208
SgeI	CNNG	7 cut(s)	38, 58, 87, 115, 163, 234, 247
Sse9I	AATT	1 cut(s)	184
SsiI	CCGC	1 cut(s)	154
SstI	GAGCTC	1 cut(s)	147
TasI	AATT	1 cut(s)	184
TauI	GCSGC	1 cut(s)	157
Tru1I	TTAA	1 cut(s)	206
Tru9I	TTAA	1 cut(s)	206
TspDTI	ATGAA	2 cut(s)	52, 241
TspGWI	ACGGA	2 cut(s)	47, 63
XcmI	CCANNNNNNNNNTGG	1 cut(s)	219
XmnI	GAANNNNTTC	2 cut(s)	53, 248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.