Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G31430 AT1G31430 |
| fragaria_vesca | FvH4_1g04051 |
| malus_domestica | MD04G1011600.v1.1 |
| prunus_persica | Prupe.7G236400_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr2g0089541 |
| rosa_laevigata | RLG00000016038 |
| rosa_multiflora | Rmu_sc0006193.1_g000007 |
| rosa_rugosa | Rorug02G0001500 |
| rosa_samantha | Rh2BG045500 Rh2BG045600 Rh2DG046800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 152 |
| AclWI | GGATC | 1 cut(s) | 61 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 152 |
| AgsI | TTSAA | 1 cut(s) | 52 |
| AluBI | AGCT | 3 cut(s) | 39, 58, 124 |
| AluI | AGCT | 3 cut(s) | 39, 58, 124 |
| Alw26I | GTCTC | 1 cut(s) | 150 |
| AlwI | GGATC | 1 cut(s) | 61 |
| ApeKI | GCWGC | 2 cut(s) | 39, 55 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 179 |
| BbsI | GAAGAC | 1 cut(s) | 124 |
| BbvI | GCAGC | 2 cut(s) | 26, 67 |
| BcoDI | GTCTC | 1 cut(s) | 150 |
| BisI | GCNGC | 2 cut(s) | 40, 56 |
| BlsI | GCNGC | 2 cut(s) | 41, 57 |
| BmsI | GCATC | 2 cut(s) | 23, 30 |
| BpiI | GAAGAC | 1 cut(s) | 124 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 99, 131 |
| BpuEI | CTTGAG | 1 cut(s) | 17 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 152 |
| BseGI | GGATG | 2 cut(s) | 21, 189 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 152 |
| BseRI | GAGGAG | 1 cut(s) | 20 |
| BseXI | GCAGC | 2 cut(s) | 26, 67 |
| BsgI | GTGCAG | 1 cut(s) | 121 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 152 |
| BsmAI | GTCTC | 1 cut(s) | 150 |
| Bsp143I | GATC | 2 cut(s) | 66, 184 |
| BspPI | GGATC | 1 cut(s) | 61 |
| BssMI | GATC | 2 cut(s) | 66, 184 |
| BstF5I | GGATG | 2 cut(s) | 21, 189 |
| BstKTI | GATC | 2 cut(s) | 69, 187 |
| BstMAI | GTCTC | 1 cut(s) | 150 |
| BstMBI | GATC | 2 cut(s) | 66, 184 |
| BstV1I | GCAGC | 2 cut(s) | 26, 67 |
| BstV2I | GAAGAC | 1 cut(s) | 124 |
| BstX2I | RGATCY | 1 cut(s) | 66 |
| BstYI | RGATCY | 1 cut(s) | 66 |
| BtsCI | GGATG | 2 cut(s) | 21, 189 |
| CviAII | CATG | 3 cut(s) | 18, 127, 218 |
| CviJI | RGCY | 4 cut(s) | 39, 58, 110, 124 |
| CviKI_1 | RGCY | 4 cut(s) | 39, 58, 110, 124 |
| DpnI | GATC | 2 cut(s) | 68, 186 |
| DpnII | GATC | 2 cut(s) | 66, 184 |
| EcoT22I | ATGCAT | 2 cut(s) | 23, 223 |
| FaeI | CATG | 3 cut(s) | 21, 130, 221 |
| FaiI | YATR | 5 cut(s) | 11, 19, 128, 219, 223 |
| FatI | CATG | 3 cut(s) | 17, 126, 217 |
| Fnu4HI | GCNGC | 2 cut(s) | 40, 56 |
| FokI | GGATG | 2 cut(s) | 8, 176 |
| Fsp4HI | GCNGC | 2 cut(s) | 40, 56 |
| GluI | GCNGC | 2 cut(s) | 40, 56 |
| Hin1II | CATG | 3 cut(s) | 21, 130, 221 |
| Hpy188III | TCNNGA | 1 cut(s) | 34 |
| HpyAV | CCTTC | 1 cut(s) | 95 |
| HpyCH4V | TGCA | 6 cut(s) | 21, 42, 105, 138, 163, 221 |
| Hsp92II | CATG | 3 cut(s) | 21, 130, 221 |
| Kzo9I | GATC | 2 cut(s) | 66, 184 |
| LpnPI | CCDG | 1 cut(s) | 213 |
| Lsp1109I | GCAGC | 2 cut(s) | 26, 67 |
| LweI | GCATC | 2 cut(s) | 23, 30 |
| MalI | GATC | 2 cut(s) | 68, 186 |
| MboI | GATC | 2 cut(s) | 66, 184 |
| MboII | GAAGA | 3 cut(s) | 124, 172, 218 |
| MflI | RGATCY | 1 cut(s) | 66 |
| MmeI | TCCRAC | 1 cut(s) | 49 |
| MnlI | CCTC | 2 cut(s) | 41, 125 |
| Mph1103I | ATGCAT | 2 cut(s) | 23, 223 |
| MroXI | GAANNNNTTC | 1 cut(s) | 179 |
| NdeII | GATC | 2 cut(s) | 66, 184 |
| NlaIII | CATG | 3 cut(s) | 21, 130, 221 |
| NmeAIII | GCCGAG | 1 cut(s) | 196 |
| NsiI | ATGCAT | 2 cut(s) | 23, 223 |
| PdmI | GAANNNNTTC | 1 cut(s) | 179 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 152 |
| PkrI | GCNGC | 2 cut(s) | 41, 57 |
| PsuI | RGATCY | 1 cut(s) | 66 |
| SatI | GCNGC | 2 cut(s) | 40, 56 |
| Sau3AI | GATC | 2 cut(s) | 66, 184 |
| SetI | ASST | 3 cut(s) | 41, 60, 126 |
| SfaNI | GCATC | 2 cut(s) | 23, 30 |
| SmlI | CTYRAG | 1 cut(s) | 32 |
| SmoI | CTYRAG | 1 cut(s) | 32 |
| TaqI | TCGA | 1 cut(s) | 183 |
| TseI | GCWGC | 2 cut(s) | 39, 55 |
| TspDTI | ATGAA | 1 cut(s) | 219 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 152 |
| XmnI | GAANNNNTTC | 1 cut(s) | 179 |
| Zsp2I | ATGCAT | 2 cut(s) | 23, 223 |