Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005071

Physical Location & Seq

Genomic Coordinates Forward (+)

211457 .. 214743

Gene Structure 3287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0001500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGCTCTGCAACATGCTATGAGGCTCCCATATCTCTTCTCCTCATCAACACACAACAAATTTGTAGCACCCATTTCGTTGATTAGTCGTCAAGGGCATCAATTCAGCACAAAAAGAAGAGAGGTTACTAGATTGTATGCCTCTAGTTCAGGCGACCCCTATTTGATGGATTCTGATGAGAGACGTGAATGGAGAGAGAAAATTAGACAAGTGTTAGATAAAAACCCGGATGTGGAGGAGGAGGAGCTAGACCCTACTGATAGGACCAGGAAAGTGCAGGAACTTCTGGCCAACTATCCTCTCGTTGTGGATGAGGATGATCCTGAATGGCCTGATGATGCCGACGGCCGCGGTTTCAAGTTGGATCAATTCTTTGACAAGATTACTATCAACAACACCCCAAGGAAGGATGACGACGACGATAGTGACAATGAACTAGTATGGCAAGATGATAATTATATTCGTCCCATCAAAGATATAACAACTGCTGAATGGGAAGAGACCGTTTTCAAGGACATTAGCCCTTTGGTCATTCTTGTACATAATCGCTATAAAAGACCAAAAGAGAATGAAAAAATTCGGACTGAACTGGAGAAGGCTGTACAAATTATATGGAATTGCAGGCTACCTTCACCAAGATGCATTGCAATTGATGCTGTTACTGAGCATGACTTGGTTTCTGCTCTCCAAGTGTCTGTCTACCCCGAGATCATCTTCACCAAGGCTGGGAAGATCTTGTATCGTGAGAAAGCAATACGAAGCGGAGATGAGCTCTCAAAAGTAATGGCTTTCTTTTACTATGGAGCAGCCAAACCAGCTTGTTTGAATGGAATTGGTGATAGGCAGGAAGAAATTCCATCCATTCGTATCAATGCCCAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

294

Amino Acids

34.14

Weight (kDa)

5.06

Isoelectric Point (pI)

44.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08070 AT1G08070
fragaria_vesca	FvH4_1g03710 FvH4_1g04070
malus_domestica	MD02G1039500.v1.1 MD15G1176200.v1.1 MD15G1180300.v1.1
prunus_persica	Prupe.7G236200_v2.0.a1 Prupe.7G239300_v2.0.a1
pyrus_communis	pycom02g03280 pycom15g15800 pycom15g16170 pycom15g16180
rosa_chinensis	RchiOBHm_Chr2g0089161 RchiOBHm_Chr2g0089561
rosa_laevigata	RLG00000015999 RLG00000016040
rosa_multiflora	Rmu_co8347093.1_g000001 Rmu_sc0006193.1_g000005 Rmu_sc0008909.1_g000002 Rmu_sc0023591.1_g000001
rosa_rugosa	Rorug01G0488000 Rorug02G0001500
rosa_samantha	Rh2AG043600 Rh2BG042300 Rh2CG043600 Rh2CG047500 Rh2DG042700
rosa_wichuraiana	Rw2G003400 Rw2G003590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	699
AccII	CGCG	1 cut(s)	351
AciI	CCGC	3 cut(s)	349, 351, 762
AclWI	GGATC	2 cut(s)	314, 372
AcoI	YGGCCR	2 cut(s)	288, 346
AcsI	RAATTY	3 cut(s)	59, 576, 852
AfaI	GTAC	2 cut(s)	540, 603
AfiI	CCNNNNNNNGG	3 cut(s)	232, 406, 726
AgsI	TTSAA	3 cut(s)	358, 511, 826
AhlI	ACTAGT	1 cut(s)	436
AjiI	CACGTC	1 cut(s)	185
AjnI	CCWGG	1 cut(s)	266
AluBI	AGCT	3 cut(s)	247, 772, 818
AluI	AGCT	3 cut(s)	247, 772, 818
Alw21I	GWGCWC	1 cut(s)	774
Alw26I	GTCTC	2 cut(s)	175, 494
AlwI	GGATC	2 cut(s)	314, 372
Ama87I	CYCGRG	1 cut(s)	704
AoxI	GGCC	3 cut(s)	288, 329, 346
ApeKI	GCWGC	1 cut(s)	806
ApoI	RAATTY	3 cut(s)	59, 576, 852
Asp700I	GAANNNNTTC	2 cut(s)	576, 852
AspS9I	GGNCC	1 cut(s)	264
AsuC2I	CCSGG	1 cut(s)	227
AsuHPI	GGTGA	3 cut(s)	624, 709, 848
AvaI	CYCGRG	1 cut(s)	704
AvaII	GGWCC	1 cut(s)	264
BalI	TGGCCA	1 cut(s)	290
BanII	GRGCYC	1 cut(s)	774
BarI	GAAGNNNNNNTAC	2 cut(s)	109, 141
Bbv12I	GWGCWC	1 cut(s)	774
BbvI	GCAGC	1 cut(s)	818
BccI	CCATC	3 cut(s)	160, 476, 865
BceAI	ACGGC	1 cut(s)	361
BcgI	CGANNNNNNTGC	2 cut(s)	57, 91
BciT130I	CCWGG	1 cut(s)	268
BcnI	CCSGG	1 cut(s)	227
BcoDI	GTCTC	2 cut(s)	175, 494
BcuI	ACTAGT	1 cut(s)	436
BfaI	CTAG	4 cut(s)	129, 144, 248, 437
BglII	AGATCT	1 cut(s)	732
BisI	GCNGC	2 cut(s)	349, 807
BlsI	GCNGC	2 cut(s)	350, 808
Bme1390I	CCNGG	2 cut(s)	227, 268
Bme18I	GGWCC	1 cut(s)	264
BmeT110I	CYCGRG	1 cut(s)	704
BmgBI	CACGTC	1 cut(s)	185
BmgT120I	GGNCC	1 cut(s)	264
BmiI	GGNNCC	1 cut(s)	26
BmrFI	CCNGG	2 cut(s)	227, 268
BmsI	GCATC	4 cut(s)	106, 328, 629, 643
BplI	GAGNNNNNCTC	2 cut(s)	756, 788
BpmI	CTGGAG	1 cut(s)	611
BpuMI	CCSGG	1 cut(s)	227
BsaBI	GATNNNNATC	1 cut(s)	386
BsaI	GGTCTC	1 cut(s)	494
BsaJI	CCNNGG	3 cut(s)	349, 401, 720
Bsc4I	CCNNNNNNNGG	3 cut(s)	232, 406, 726
Bse1I	ACTGG	1 cut(s)	594
Bse3DI	GCAATG	1 cut(s)	642
Bse8I	GATNNNNATC	1 cut(s)	386
BseBI	CCWGG	1 cut(s)	268
BseDI	CCNNGG	3 cut(s)	349, 401, 720
BseGI	GGATG	5 cut(s)	235, 316, 322, 415, 857
BseJI	GATNNNNATC	1 cut(s)	386
BseLI	CCNNNNNNNGG	3 cut(s)	232, 406, 726
BseMI	GCAATG	1 cut(s)	642
BseMII	CTCAG	1 cut(s)	654
BseNI	ACTGG	1 cut(s)	594
BseRI	GAGGAG	4 cut(s)	31, 251, 254, 257
BseX3I	CGGCCG	1 cut(s)	346
BseXI	GCAGC	1 cut(s)	818
BseYI	CCCAGC	1 cut(s)	725
BsgI	GTGCAG	1 cut(s)	296
Bsh1236I	CGCG	1 cut(s)	351
Bsh1285I	CGRYCG	1 cut(s)	349
BshFI	GGCC	3 cut(s)	290, 331, 348
BsiEI	CGRYCG	1 cut(s)	349
BsiHKAI	GWGCWC	1 cut(s)	774
BsiHKCI	CYCGRG	1 cut(s)	704
BsiSI	CCGG	1 cut(s)	227
BslFI	GGGAC	1 cut(s)	450
BslI	CCNNNNNNNGG	3 cut(s)	232, 406, 726
BsmAI	GTCTC	2 cut(s)	175, 494
BsmBI	CGTCTC	1 cut(s)	175
BsmFI	GGGAC	1 cut(s)	450
BsnI	GGCC	3 cut(s)	290, 331, 348
Bso31I	GGTCTC	1 cut(s)	494
BsoBI	CYCGRG	1 cut(s)	704
Bsp1286I	GDGCHC	1 cut(s)	774
Bsp1407I	TGTACA	2 cut(s)	538, 601
Bsp143I	GATC	4 cut(s)	319, 364, 708, 732
BspACI	CCGC	3 cut(s)	349, 351, 762
BspANI	GGCC	3 cut(s)	290, 331, 348
BspCNI	CTCAG	1 cut(s)	655
BspFNI	CGCG	1 cut(s)	351
BspLI	GGNNCC	1 cut(s)	26
BspPI	GGATC	2 cut(s)	314, 372
BspTNI	GGTCTC	1 cut(s)	494
BsrDI	GCAATG	1 cut(s)	642
BsrGI	TGTACA	2 cut(s)	538, 601
BsrI	ACTGG	1 cut(s)	594
BssECI	CCNNGG	3 cut(s)	349, 401, 720
BssMI	GATC	4 cut(s)	319, 364, 708, 732
BssT1I	CCWWGG	2 cut(s)	401, 720
Bst2UI	CCWGG	1 cut(s)	268
Bst4CI	ACNGT	1 cut(s)	505
Bst6I	CTCTTC	3 cut(s)	41, 112, 492
BstAPI	GCANNNNNTGC	1 cut(s)	653
BstAUI	TGTACA	2 cut(s)	538, 601
BstC8I	GCNNGC	1 cut(s)	623
BstDEI	CTNAG	1 cut(s)	663
BstDSI	CCRYGG	1 cut(s)	349
BstF5I	GGATG	5 cut(s)	235, 316, 322, 415, 857
BstFNI	CGCG	1 cut(s)	351
BstKTI	GATC	4 cut(s)	322, 367, 711, 735
BstMAI	GTCTC	2 cut(s)	175, 494
BstMBI	GATC	4 cut(s)	319, 364, 708, 732
BstMCI	CGRYCG	1 cut(s)	349
BstMWI	GCNNNNNNNGC	2 cut(s)	653, 815
BstNI	CCWGG	1 cut(s)	268
BstNSI	RCATGY	1 cut(s)	17
BstSCI	CCNGG	2 cut(s)	225, 266
BstUI	CGCG	1 cut(s)	351
BstV1I	GCAGC	1 cut(s)	818
BstX2I	RGATCY	1 cut(s)	732
BstYI	RGATCY	1 cut(s)	732
BstZI	CGGCCG	1 cut(s)	346
BsuRI	GGCC	3 cut(s)	290, 331, 348
BtgI	CCRYGG	1 cut(s)	349
BtrI	CACGTC	1 cut(s)	185
BtsCI	GGATG	5 cut(s)	235, 316, 322, 415, 857
Cac8I	GCNNGC	1 cut(s)	623
Cfr13I	GGNCC	1 cut(s)	264
Cfr42I	CCGCGG	1 cut(s)	352
Csp6I	GTAC	2 cut(s)	539, 602
CviAII	CATG	3 cut(s)	14, 668, 882
CviQI	GTAC	2 cut(s)	539, 602
DdeI	CTNAG	1 cut(s)	663
DpnI	GATC	4 cut(s)	321, 366, 710, 734
DpnII	GATC	4 cut(s)	319, 364, 708, 732
EaeI	YGGCCR	2 cut(s)	288, 346
EagI	CGGCCG	1 cut(s)	346
Eam1104I	CTCTTC	3 cut(s)	41, 112, 492
EarI	CTCTTC	3 cut(s)	41, 112, 492
Ecl136II	GAGCTC	1 cut(s)	772
EclXI	CGGCCG	1 cut(s)	346
Eco130I	CCWWGG	2 cut(s)	401, 720
Eco24I	GRGCYC	1 cut(s)	774
Eco31I	GGTCTC	1 cut(s)	494
Eco47I	GGWCC	1 cut(s)	264
Eco52I	CGGCCG	1 cut(s)	346
Eco53kI	GAGCTC	1 cut(s)	772
Eco88I	CYCGRG	1 cut(s)	704
EcoICRI	GAGCTC	1 cut(s)	772
EcoRII	CCWGG	1 cut(s)	266
EcoT14I	CCWWGG	2 cut(s)	401, 720
EcoT22I	ATGCAT	1 cut(s)	644
EcoT38I	GRGCYC	1 cut(s)	774
ErhI	CCWWGG	2 cut(s)	401, 720
Esp3I	CGTCTC	1 cut(s)	175
FaeI	CATG	3 cut(s)	17, 671, 885
FaqI	GGGAC	1 cut(s)	450
FatI	CATG	3 cut(s)	13, 667, 881
FblI	GTMKAC	1 cut(s)	699
Fnu4HI	GCNGC	2 cut(s)	349, 807
FokI	GGATG	5 cut(s)	242, 323, 329, 422, 844
FriOI	GRGCYC	1 cut(s)	774
Fsp4HI	GCNGC	2 cut(s)	349, 807
FspBI	CTAG	4 cut(s)	129, 144, 248, 437
GluI	GCNGC	2 cut(s)	349, 807
GsaI	CCCAGC	1 cut(s)	729
GsuI	CTGGAG	1 cut(s)	611
HaeIII	GGCC	3 cut(s)	290, 331, 348
HapII	CCGG	1 cut(s)	227
Hin1II	CATG	3 cut(s)	17, 671, 885
HinfI	GANTC	1 cut(s)	170
HpaII	CCGG	1 cut(s)	227
HphI	GGTGA	3 cut(s)	624, 709, 848
Hpy166II	GTNNAC	1 cut(s)	700
Hpy188I	TCNGA	2 cut(s)	175, 582
Hpy188III	TCNNGA	2 cut(s)	323, 743
Hpy8I	GTNNAC	1 cut(s)	700
Hpy99I	CGWCG	3 cut(s)	347, 419, 422
HpyAV	CCTTC	3 cut(s)	400, 589, 639
HpyCH4III	ACNGT	1 cut(s)	505
HpyCH4IV	ACGT	1 cut(s)	184
HpyCH4V	TGCA	5 cut(s)	10, 277, 621, 642, 647
HpyF10VI	GCNNNNNNNGC	2 cut(s)	653, 815
HpyF3I	CTNAG	1 cut(s)	663
HpySE526I	ACGT	1 cut(s)	184
Hsp92II	CATG	3 cut(s)	17, 671, 885
KspI	CCGCGG	1 cut(s)	352
Kzo9I	GATC	4 cut(s)	319, 364, 708, 732
LmnI	GCTCC	3 cut(s)	30, 244, 803
Lsp1109I	GCAGC	1 cut(s)	818
LweI	GCATC	4 cut(s)	106, 328, 629, 643
MaeI	CTAG	4 cut(s)	129, 144, 248, 437
MaeII	ACGT	1 cut(s)	184
MaeIII	GTNAC	3 cut(s)	124, 425, 658
MalI	GATC	4 cut(s)	321, 366, 710, 734
MboI	GATC	4 cut(s)	319, 364, 708, 732
MboII	GAAGA	6 cut(s)	28, 129, 509, 706, 742, 860
MfeI	CAATTG	1 cut(s)	648
MflI	RGATCY	1 cut(s)	732
MhlI	GDGCHC	1 cut(s)	774
MlsI	TGGCCA	1 cut(s)	290
MluNI	TGGCCA	1 cut(s)	290
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	9 cut(s)	15, 52, 115, 151, 229, 232, 235, 307, 309
Mox20I	TGGCCA	1 cut(s)	290
Mph1103I	ATGCAT	1 cut(s)	644
MroXI	GAANNNNTTC	2 cut(s)	576, 852
MscI	TGGCCA	1 cut(s)	290
MslI	CAYNNNNRTG	1 cut(s)	637
Msp20I	TGGCCA	1 cut(s)	290
MspA1I	CMGCKG	1 cut(s)	351
MspI	CCGG	1 cut(s)	227
MspR9I	CCNGG	2 cut(s)	227, 268
MunI	CAATTG	1 cut(s)	648
MvaI	CCWGG	1 cut(s)	268
MvnI	CGCG	1 cut(s)	351
MwoI	GCNNNNNNNGC	2 cut(s)	653, 815
NciI	CCSGG	1 cut(s)	227
NdeII	GATC	4 cut(s)	319, 364, 708, 732
NlaIII	CATG	3 cut(s)	17, 671, 885
NlaIV	GGNNCC	1 cut(s)	26
NmuCI	GTSAC	1 cut(s)	425
NsiI	ATGCAT	1 cut(s)	644
NspI	RCATGY	1 cut(s)	17
PdmI	GAANNNNTTC	2 cut(s)	576, 852
PfeI	GAWTC	1 cut(s)	170
PkrI	GCNGC	2 cut(s)	350, 808
Psp124BI	GAGCTC	1 cut(s)	774
Psp6I	CCWGG	1 cut(s)	266
PspFI	CCCAGC	1 cut(s)	725
PspGI	CCWGG	1 cut(s)	266
PspN4I	GGNNCC	1 cut(s)	26
PspPI	GGNCC	1 cut(s)	264
PsuI	RGATCY	1 cut(s)	732
RsaI	GTAC	2 cut(s)	540, 603
RsaNI	GTAC	2 cut(s)	539, 602
RseI	CAYNNNNRTG	1 cut(s)	637
SacI	GAGCTC	1 cut(s)	774
SacII	CCGCGG	1 cut(s)	352
SatI	GCNGC	2 cut(s)	349, 807
Sau3AI	GATC	4 cut(s)	319, 364, 708, 732
Sau96I	GGNCC	1 cut(s)	264
ScrFI	CCNGG	2 cut(s)	227, 268
SduI	GDGCHC	1 cut(s)	774
SetI	ASST	6 cut(s)	126, 187, 249, 631, 774, 820
SfaNI	GCATC	4 cut(s)	106, 328, 629, 643
Sfr303I	CCGCGG	1 cut(s)	352
SgrBI	CCGCGG	1 cut(s)	352
SinI	GGWCC	1 cut(s)	264
SmiMI	CAYNNNNRTG	1 cut(s)	637
SpeI	ACTAGT	1 cut(s)	436
SsiI	CCGC	3 cut(s)	349, 351, 762
SspMI	CTAG	4 cut(s)	129, 144, 248, 437
SstI	GAGCTC	1 cut(s)	774
StyD4I	CCNGG	2 cut(s)	225, 266
StyI	CCWWGG	2 cut(s)	401, 720
TaaI	ACNGT	1 cut(s)	505
TaiI	ACGT	1 cut(s)	187
TatI	WGTACW	2 cut(s)	538, 601
TauI	GCSGC	1 cut(s)	351
TfiI	GAWTC	1 cut(s)	170
TseFI	GTSAC	1 cut(s)	425
TseI	GCWGC	1 cut(s)	806
Tsp45I	GTSAC	1 cut(s)	425
TspDTI	ATGAA	2 cut(s)	447, 585
VpaK11BI	GGWCC	1 cut(s)	264
XapI	RAATTY	3 cut(s)	59, 576, 852
XceI	RCATGY	1 cut(s)	17
XmiI	GTMKAC	1 cut(s)	699
XmnI	GAANNNNTTC	2 cut(s)	576, 852
XspI	CTAG	4 cut(s)	129, 144, 248, 437
Zsp2I	ATGCAT	1 cut(s)	644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.