Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005071

Physical Location & Seq

Genomic Coordinates Forward (+)

3376570 .. 3378708

Gene Structure 2139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG043600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGAGCAAGCTCATTGAGTTTTGCGCCGTTTCGCAATTTGGGGACCTCTCCTATGCTCTGTCGGTCTTCGAATGCGTTGAGAATCCGAACCAGATTATTTGGAACACGATTATTCGAGGCTATTCCTTGAGCTCGAAGCCATTACAGGCCGTGGAGTTCTATGTAAGGATGATTGTTTCGGGTGCTGAGCCGAATTCTTACACATTCCCTTTCGTTTTGAAGTCTTGTGCGAAAGCTGGGGCAGTTCAGGAAGGGAAGCAGGTCCATGGGCATGTGTTGAAGCATGGAGTTGGCTCTGATGCGTTTGTGCACACTTCTCTGATCAACATGTATGCGAAAAGTGGTGAATTGGATAATGCAAGAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

122

Amino Acids

13.41

Weight (kDa)

6.4

Isoelectric Point (pI)

33.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	29 - 78	7.9e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08070 AT1G08070
fragaria_vesca	FvH4_1g03710 FvH4_1g04070
malus_domestica	MD02G1039500.v1.1 MD15G1176200.v1.1 MD15G1180300.v1.1
prunus_persica	Prupe.7G236200_v2.0.a1 Prupe.7G239300_v2.0.a1
pyrus_communis	pycom02g03280 pycom15g15800 pycom15g16170 pycom15g16180
rosa_chinensis	RchiOBHm_Chr2g0089161 RchiOBHm_Chr2g0089561
rosa_laevigata	RLG00000015999 RLG00000016040
rosa_multiflora	Rmu_co8347093.1_g000001 Rmu_sc0006193.1_g000005 Rmu_sc0008909.1_g000002 Rmu_sc0023591.1_g000001
rosa_rugosa	Rorug01G0488000 Rorug02G0001500
rosa_samantha	Rh2AG043600 Rh2BG042300 Rh2CG043600 Rh2CG047500 Rh2DG042700
rosa_wichuraiana	Rw2G003400 Rw2G003590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	250
AcsI	RAATTY	1 cut(s)	193
AflIII	ACRYGT	1 cut(s)	327
AgsI	TTSAA	2 cut(s)	220, 280
AluBI	AGCT	3 cut(s)	10, 132, 236
AluI	AGCT	3 cut(s)	10, 132, 236
Alw21I	GWGCWC	2 cut(s)	134, 312
Alw26I	GTCTC	1 cut(s)	357
Alw44I	GTGCAC	1 cut(s)	308
AoxI	GGCC	1 cut(s)	147
ApaLI	GTGCAC	1 cut(s)	308
ApoI	RAATTY	1 cut(s)	193
AspLEI	GCGC	1 cut(s)	26
AspS9I	GGNCC	2 cut(s)	43, 262
AsuHPI	GGTGA	1 cut(s)	356
AsuII	TTCGAA	1 cut(s)	69
AvaII	GGWCC	2 cut(s)	43, 262
BaeGI	GKGCMC	1 cut(s)	312
BanII	GRGCYC	1 cut(s)	134
BbsI	GAAGAC	1 cut(s)	58
Bbv12I	GWGCWC	2 cut(s)	134, 312
BceAI	ACGGC	2 cut(s)	11, 134
BclI	TGATCA	1 cut(s)	321
BcoDI	GTCTC	1 cut(s)	357
BfuAI	ACCTGC	1 cut(s)	250
BlpI	GCTNAGC	1 cut(s)	186
Bme18I	GGWCC	2 cut(s)	43, 262
BmgT120I	GGNCC	2 cut(s)	43, 262
BmiI	GGNNCC	1 cut(s)	44
BmsI	GCATC	1 cut(s)	289
BpiI	GAAGAC	1 cut(s)	58
Bpu1102I	GCTNAGC	1 cut(s)	186
Bpu14I	TTCGAA	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	148
BsaJI	CCNNGG	2 cut(s)	150, 265
BseDI	CCNNGG	2 cut(s)	150, 265
BseGI	GGATG	1 cut(s)	174
BseMII	CTCAG	1 cut(s)	177
BseSI	GKGCMC	1 cut(s)	312
BseYI	CCCAGC	1 cut(s)	236
BshFI	GGCC	1 cut(s)	149
BsiHKAI	GWGCWC	2 cut(s)	134, 312
BslFI	GGGAC	1 cut(s)	56
BsmAI	GTCTC	1 cut(s)	357
BsmFI	GGGAC	1 cut(s)	56
BsmI	GAATGC	1 cut(s)	77
BsnI	GGCC	1 cut(s)	149
Bsp119I	TTCGAA	1 cut(s)	69
Bsp1286I	GDGCHC	2 cut(s)	134, 312
Bsp143I	GATC	1 cut(s)	321
Bsp1720I	GCTNAGC	1 cut(s)	186
Bsp19I	CCATGG	1 cut(s)	265
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	1 cut(s)	178
BspLI	GGNNCC	1 cut(s)	44
BspMI	ACCTGC	1 cut(s)	250
BspT104I	TTCGAA	1 cut(s)	69
BssECI	CCNNGG	2 cut(s)	150, 265
BssMI	GATC	1 cut(s)	321
BssT1I	CCWWGG	1 cut(s)	265
BstBI	TTCGAA	1 cut(s)	69
BstC8I	GCNNGC	1 cut(s)	8
BstDEI	CTNAG	1 cut(s)	186
BstDSI	CCRYGG	2 cut(s)	150, 265
BstF5I	GGATG	1 cut(s)	174
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	1 cut(s)	324
BstMAI	GTCTC	1 cut(s)	357
BstMBI	GATC	1 cut(s)	321
BstNSI	RCATGY	2 cut(s)	275, 331
BstSLI	GKGCMC	1 cut(s)	312
BstV2I	GAAGAC	1 cut(s)	58
BsuRI	GGCC	1 cut(s)	149
BtgI	CCRYGG	2 cut(s)	150, 265
BtsCI	GGATG	1 cut(s)	174
BveI	ACCTGC	1 cut(s)	250
Cac8I	GCNNGC	1 cut(s)	8
CfoI	GCGC	1 cut(s)	26
Cfr13I	GGNCC	2 cut(s)	43, 262
CviAII	CATG	4 cut(s)	266, 272, 284, 328
CviJI	RGCY	8 cut(s)	10, 120, 132, 139, 149, 190, 236, 294
CviKI_1	RGCY	8 cut(s)	10, 120, 132, 139, 149, 190, 236, 294
DdeI	CTNAG	1 cut(s)	186
DpnI	GATC	1 cut(s)	323
DpnII	GATC	1 cut(s)	321
Ecl136II	GAGCTC	1 cut(s)	132
Eco130I	CCWWGG	1 cut(s)	265
Eco24I	GRGCYC	1 cut(s)	134
Eco47I	GGWCC	2 cut(s)	43, 262
Eco53kI	GAGCTC	1 cut(s)	132
EcoICRI	GAGCTC	1 cut(s)	132
EcoO109I	RGGNCCY	1 cut(s)	43
EcoRI	GAATTC	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	265
EcoT38I	GRGCYC	1 cut(s)	134
ErhI	CCWWGG	1 cut(s)	265
FaeI	CATG	4 cut(s)	269, 275, 287, 331
FaiI	YATR	7 cut(s)	54, 162, 267, 273, 285, 329, 333
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	4 cut(s)	265, 271, 283, 327
FbaI	TGATCA	1 cut(s)	321
FokI	GGATG	1 cut(s)	181
FriOI	GRGCYC	1 cut(s)	134
GlaI	GCGC	1 cut(s)	25
GsaI	CCCAGC	1 cut(s)	240
HaeIII	GGCC	1 cut(s)	149
HhaI	GCGC	1 cut(s)	26
Hin1II	CATG	4 cut(s)	269, 275, 287, 331
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HinfI	GANTC	1 cut(s)	82
HphI	GGTGA	1 cut(s)	356
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	3 cut(s)	87, 298, 321
Hpy188III	TCNNGA	1 cut(s)	248
Hpy8I	GTNNAC	1 cut(s)	310
HpyAV	CCTTC	1 cut(s)	245
HpyCH4V	TGCA	2 cut(s)	310, 359
HpyF3I	CTNAG	1 cut(s)	186
Hsp92II	CATG	4 cut(s)	269, 275, 287, 331
HspAI	GCGC	1 cut(s)	24
Ksp22I	TGATCA	1 cut(s)	321
Kzo9I	GATC	1 cut(s)	321
LpnPI	CCDG	5 cut(s)	104, 131, 222, 233, 245
LweI	GCATC	1 cut(s)	289
MalI	GATC	1 cut(s)	323
MboI	GATC	1 cut(s)	321
MboII	GAAGA	1 cut(s)	58
MhlI	GDGCHC	2 cut(s)	134, 312
MluCI	AATT	3 cut(s)	35, 193, 347
MnlI	CCTC	2 cut(s)	56, 110
MslI	CAYNNNNRTG	1 cut(s)	270
Mva1269I	GAATGC	1 cut(s)	77
NcoI	CCATGG	1 cut(s)	265
NdeII	GATC	1 cut(s)	321
NlaIII	CATG	4 cut(s)	269, 275, 287, 331
NlaIV	GGNNCC	1 cut(s)	44
NspI	RCATGY	2 cut(s)	275, 331
NspV	TTCGAA	1 cut(s)	69
PciI	ACATGT	1 cut(s)	327
PctI	GAATGC	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	82
PpuMI	RGGWCCY	1 cut(s)	43
PscI	ACATGT	1 cut(s)	327
Psp124BI	GAGCTC	1 cut(s)	134
Psp5II	RGGWCCY	1 cut(s)	43
PspFI	CCCAGC	1 cut(s)	236
PspN4I	GGNNCC	1 cut(s)	44
PspPI	GGNCC	2 cut(s)	43, 262
PspPPI	RGGWCCY	1 cut(s)	43
RseI	CAYNNNNRTG	1 cut(s)	270
SacI	GAGCTC	1 cut(s)	134
Sau3AI	GATC	1 cut(s)	321
Sau96I	GGNCC	2 cut(s)	43, 262
SduI	GDGCHC	2 cut(s)	134, 312
SetI	ASST	5 cut(s)	12, 48, 134, 238, 264
SfaNI	GCATC	1 cut(s)	289
SfuI	TTCGAA	1 cut(s)	69
SinI	GGWCC	2 cut(s)	43, 262
SmiMI	CAYNNNNRTG	1 cut(s)	270
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
Sse9I	AATT	3 cut(s)	35, 193, 347
SstI	GAGCTC	1 cut(s)	134
StyI	CCWWGG	1 cut(s)	265
TaqI	TCGA	3 cut(s)	69, 115, 134
TaqII	GACCGA	1 cut(s)	52
TasI	AATT	3 cut(s)	35, 193, 347
TfiI	GAWTC	1 cut(s)	82
VneI	GTGCAC	1 cut(s)	308
VpaK11BI	GGWCC	2 cut(s)	43, 262
XapI	RAATTY	1 cut(s)	193
XceI	RCATGY	2 cut(s)	275, 331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.