Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023591.1

Orthogroup ID

OG0005071

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 522

Gene Structure 521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023591.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 521 bp

atggtgttttcgttttcatcttcgtcttcgttgctgaccgctccaccctccacccttcacgtcctccccgcctccgatcctccgtacaacctcctccaaacccacccatctctcaccctcctctccaaatgcagaagcatccaaaatctcagacaagtccacacccacatcatcaagaccggcctccacaacacccactttgctatgagcaagctcattgagttttgcgccgtttcgcaatttggggacctctcctatgctctgtcggtcttcgaatgcgttgagaatccgaaccagattatttggaacacaattattcgaggctattccttgagctcgaagccattacaggccgtggagttctatgtaaggatgattgtttcgggtgctgagccgaattcttacactttcccttttgttttgaagtcctgtgccaaagctggggcagctcaggaagggaagcaggtccatgggcatgtgttgaagcatggagttggctctgatgcgtttgtgcacacttc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

174

Amino Acids

19.06

Weight (kDa)

8.72

Isoelectric Point (pI)

43.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08070 AT1G08070
fragaria_vesca	FvH4_1g03710 FvH4_1g04070
malus_domestica	MD02G1039500.v1.1 MD15G1176200.v1.1 MD15G1180300.v1.1
prunus_persica	Prupe.7G236200_v2.0.a1 Prupe.7G239300_v2.0.a1
pyrus_communis	pycom02g03280 pycom15g15800 pycom15g16170 pycom15g16180
rosa_chinensis	RchiOBHm_Chr2g0089161 RchiOBHm_Chr2g0089561
rosa_laevigata	RLG00000015999 RLG00000016040
rosa_multiflora	Rmu_co8347093.1_g000001 Rmu_sc0006193.1_g000005 Rmu_sc0008909.1_g000002 Rmu_sc0023591.1_g000001
rosa_rugosa	Rorug01G0488000 Rorug02G0001500
rosa_samantha	Rh2AG043600 Rh2BG042300 Rh2CG043600 Rh2CG047500 Rh2DG042700
rosa_wichuraiana	Rw2G003400 Rw2G003590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	454
AccBSI	CCGCTC	1 cut(s)	41
AciI	CCGC	2 cut(s)	39, 69
AclWI	GGATC	1 cut(s)	71
AcsI	RAATTY	1 cut(s)	397
AfaI	GTAC	1 cut(s)	86
AfiI	CCNNNNNNNGG	1 cut(s)	441
AgsI	TTSAA	2 cut(s)	424, 484
AjiI	CACGTC	1 cut(s)	61
AluBI	AGCT	4 cut(s)	214, 336, 440, 449
AluI	AGCT	4 cut(s)	214, 336, 440, 449
Alw21I	GWGCWC	2 cut(s)	338, 516
Alw44I	GTGCAC	1 cut(s)	512
AlwI	GGATC	1 cut(s)	71
AoxI	GGCC	2 cut(s)	181, 351
ApaLI	GTGCAC	1 cut(s)	512
ApeKI	GCWGC	1 cut(s)	446
ApoI	RAATTY	1 cut(s)	397
AspLEI	GCGC	1 cut(s)	230
AspS9I	GGNCC	2 cut(s)	247, 466
AsuHPI	GGTGA	1 cut(s)	106
AsuII	TTCGAA	1 cut(s)	273
AvaII	GGWCC	2 cut(s)	247, 466
BaeGI	GKGCMC	1 cut(s)	516
BanII	GRGCYC	1 cut(s)	338
BbsI	GAAGAC	2 cut(s)	18, 262
Bbv12I	GWGCWC	2 cut(s)	338, 516
BbvI	GCAGC	1 cut(s)	458
BccI	CCATC	1 cut(s)	115
BceAI	ACGGC	2 cut(s)	215, 338
BfuAI	ACCTGC	1 cut(s)	454
BisI	GCNGC	1 cut(s)	447
BlpI	GCTNAGC	1 cut(s)	390
BlsI	GCNGC	1 cut(s)	448
Bme18I	GGWCC	2 cut(s)	247, 466
BmgBI	CACGTC	1 cut(s)	61
BmgT120I	GGNCC	2 cut(s)	247, 466
BmiI	GGNNCC	1 cut(s)	248
BmsI	GCATC	2 cut(s)	147, 493
BpiI	GAAGAC	2 cut(s)	18, 262
Bpu10I	CCTNAGC	1 cut(s)	450
Bpu1102I	GCTNAGC	1 cut(s)	390
Bpu14I	TTCGAA	1 cut(s)	273
BpuEI	CTTGAG	1 cut(s)	352
BsaJI	CCNNGG	2 cut(s)	354, 469
Bsc4I	CCNNNNNNNGG	1 cut(s)	441
Bse118I	RCCGGY	1 cut(s)	179
BseDI	CCNNGG	2 cut(s)	354, 469
BseGI	GGATG	2 cut(s)	138, 378
BseLI	CCNNNNNNNGG	1 cut(s)	441
BseMII	CTCAG	3 cut(s)	163, 381, 464
BseRI	GAGGAG	2 cut(s)	83, 110
BseSI	GKGCMC	1 cut(s)	516
BseXI	GCAGC	1 cut(s)	458
BseYI	CCCAGC	1 cut(s)	440
BshFI	GGCC	2 cut(s)	183, 353
BsiHKAI	GWGCWC	2 cut(s)	338, 516
BsiSI	CCGG	1 cut(s)	180
BslFI	GGGAC	1 cut(s)	260
BslI	CCNNNNNNNGG	1 cut(s)	441
BsmFI	GGGAC	1 cut(s)	260
BsmI	GAATGC	1 cut(s)	281
BsnI	GGCC	2 cut(s)	183, 353
Bsp119I	TTCGAA	1 cut(s)	273
Bsp1286I	GDGCHC	2 cut(s)	338, 516
Bsp143I	GATC	1 cut(s)	76
Bsp1720I	GCTNAGC	1 cut(s)	390
Bsp19I	CCATGG	1 cut(s)	469
BspACI	CCGC	2 cut(s)	39, 69
BspANI	GGCC	2 cut(s)	183, 353
BspCNI	CTCAG	3 cut(s)	162, 382, 463
BspLI	GGNNCC	1 cut(s)	248
BspMI	ACCTGC	1 cut(s)	454
BspPI	GGATC	1 cut(s)	71
BspT104I	TTCGAA	1 cut(s)	273
BsrBI	CCGCTC	1 cut(s)	41
BsrFI	RCCGGY	1 cut(s)	179
BssAI	RCCGGY	1 cut(s)	179
BssECI	CCNNGG	2 cut(s)	354, 469
BssMI	GATC	1 cut(s)	76
BssT1I	CCWWGG	1 cut(s)	469
BstBI	TTCGAA	1 cut(s)	273
BstC8I	GCNNGC	1 cut(s)	212
BstDEI	CTNAG	3 cut(s)	149, 390, 450
BstDSI	CCRYGG	2 cut(s)	354, 469
BstF5I	GGATG	2 cut(s)	138, 378
BstHHI	GCGC	1 cut(s)	230
BstKTI	GATC	1 cut(s)	79
BstMBI	GATC	1 cut(s)	76
BstMWI	GCNNNNNNNGC	1 cut(s)	446
BstNSI	RCATGY	1 cut(s)	479
BstSLI	GKGCMC	1 cut(s)	516
BstV1I	GCAGC	1 cut(s)	458
BstV2I	GAAGAC	2 cut(s)	18, 262
BsuRI	GGCC	2 cut(s)	183, 353
BtgI	CCRYGG	2 cut(s)	354, 469
BtrI	CACGTC	1 cut(s)	61
BtsCI	GGATG	2 cut(s)	138, 378
BveI	ACCTGC	1 cut(s)	454
Cac8I	GCNNGC	1 cut(s)	212
CfoI	GCGC	1 cut(s)	230
Cfr10I	RCCGGY	1 cut(s)	179
Cfr13I	GGNCC	2 cut(s)	247, 466
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	3 cut(s)	470, 476, 488
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	3 cut(s)	149, 390, 450
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
Ecl136II	GAGCTC	1 cut(s)	336
Eco130I	CCWWGG	1 cut(s)	469
Eco24I	GRGCYC	1 cut(s)	338
Eco47I	GGWCC	2 cut(s)	247, 466
Eco53kI	GAGCTC	1 cut(s)	336
EcoICRI	GAGCTC	1 cut(s)	336
EcoO109I	RGGNCCY	1 cut(s)	247
EcoRI	GAATTC	1 cut(s)	397
EcoT14I	CCWWGG	1 cut(s)	469
EcoT38I	GRGCYC	1 cut(s)	338
ErhI	CCWWGG	1 cut(s)	469
FaeI	CATG	3 cut(s)	473, 479, 491
FaiI	YATR	6 cut(s)	206, 258, 366, 471, 477, 489
FaqI	GGGAC	1 cut(s)	260
FatI	CATG	3 cut(s)	469, 475, 487
FauI	CCCGC	1 cut(s)	76
Fnu4HI	GCNGC	1 cut(s)	447
FokI	GGATG	2 cut(s)	125, 385
FriOI	GRGCYC	1 cut(s)	338
Fsp4HI	GCNGC	1 cut(s)	447
GlaI	GCGC	1 cut(s)	229
GluI	GCNGC	1 cut(s)	447
GsaI	CCCAGC	1 cut(s)	444
HaeIII	GGCC	2 cut(s)	183, 353
HapII	CCGG	1 cut(s)	180
HhaI	GCGC	1 cut(s)	230
Hin1II	CATG	3 cut(s)	473, 479, 491
Hin6I	GCGC	1 cut(s)	228
HinP1I	GCGC	1 cut(s)	228
HinfI	GANTC	1 cut(s)	286
HpaII	CCGG	1 cut(s)	180
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	2 cut(s)	160, 514
Hpy188I	TCNGA	4 cut(s)	76, 152, 291, 502
Hpy188III	TCNNGA	2 cut(s)	175, 452
Hpy8I	GTNNAC	2 cut(s)	160, 514
HpyAV	CCTTC	2 cut(s)	65, 449
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	2 cut(s)	132, 514
HpyF10VI	GCNNNNNNNGC	1 cut(s)	446
HpyF3I	CTNAG	3 cut(s)	149, 390, 450
HpySE526I	ACGT	1 cut(s)	60
Hsp92II	CATG	3 cut(s)	473, 479, 491
HspAI	GCGC	1 cut(s)	228
Kzo9I	GATC	1 cut(s)	76
LmnI	GCTCC	1 cut(s)	46
LpnPI	CCDG	7 cut(s)	193, 308, 335, 426, 437, 442, 449
Lsp1109I	GCAGC	1 cut(s)	458
LweI	GCATC	2 cut(s)	147, 493
MaeII	ACGT	1 cut(s)	60
MalI	GATC	1 cut(s)	78
MbiI	CCGCTC	1 cut(s)	41
MboI	GATC	1 cut(s)	76
MboII	GAAGA	3 cut(s)	12, 18, 262
MhlI	GDGCHC	2 cut(s)	338, 516
MluCI	AATT	3 cut(s)	239, 312, 397
MslI	CAYNNNNRTG	1 cut(s)	474
MspI	CCGG	1 cut(s)	180
Mva1269I	GAATGC	1 cut(s)	281
MwoI	GCNNNNNNNGC	1 cut(s)	446
NcoI	CCATGG	1 cut(s)	469
NdeII	GATC	1 cut(s)	76
NlaIII	CATG	3 cut(s)	473, 479, 491
NlaIV	GGNNCC	1 cut(s)	248
NspI	RCATGY	1 cut(s)	479
NspV	TTCGAA	1 cut(s)	273
PctI	GAATGC	1 cut(s)	281
PfeI	GAWTC	1 cut(s)	286
PkrI	GCNGC	1 cut(s)	448
PpuMI	RGGWCCY	1 cut(s)	247
Psp124BI	GAGCTC	1 cut(s)	338
Psp5II	RGGWCCY	1 cut(s)	247
PspFI	CCCAGC	1 cut(s)	440
PspN4I	GGNNCC	1 cut(s)	248
PspPI	GGNCC	2 cut(s)	247, 466
PspPPI	RGGWCCY	1 cut(s)	247
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
RseI	CAYNNNNRTG	1 cut(s)	474
SacI	GAGCTC	1 cut(s)	338
SatI	GCNGC	1 cut(s)	447
Sau3AI	GATC	1 cut(s)	76
Sau96I	GGNCC	2 cut(s)	247, 466
SduI	GDGCHC	2 cut(s)	338, 516
SetI	ASST	8 cut(s)	63, 93, 216, 252, 338, 442, 451, 468
SfaNI	GCATC	2 cut(s)	147, 493
SfuI	TTCGAA	1 cut(s)	273
SinI	GGWCC	2 cut(s)	247, 466
SmiMI	CAYNNNNRTG	1 cut(s)	474
SmlI	CTYRAG	1 cut(s)	331
SmoI	CTYRAG	1 cut(s)	331
Sse9I	AATT	3 cut(s)	239, 312, 397
SsiI	CCGC	2 cut(s)	39, 69
SstI	GAGCTC	1 cut(s)	338
StyI	CCWWGG	1 cut(s)	469
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	3 cut(s)	273, 319, 338
TaqII	GACCGA	1 cut(s)	256
TasI	AATT	3 cut(s)	239, 312, 397
TfiI	GAWTC	1 cut(s)	286
TseI	GCWGC	1 cut(s)	446
TspDTI	ATGAA	1 cut(s)	6
TspGWI	ACGGA	1 cut(s)	72
VneI	GTGCAC	1 cut(s)	512
VpaK11BI	GGWCC	2 cut(s)	247, 466
XapI	RAATTY	1 cut(s)	397
XceI	RCATGY	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.