Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005071

Physical Location & Seq

Genomic Coordinates Forward (+)

3082419 .. 3084641

Gene Structure 2223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015999

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1956 bp

ATGGTGTTTTCGTTTTCATCTTCGTCTTCGTTGCTGACCACTCCACCCTCCACCCTCCACGTCCTCCCCGCCTCCGATCCTCCGTACAACCTCCTCCAAACCCACCCATCTCTCACTCTCCTCTCCAAATGCAAAAGCATCCAAAATCTCAAACAAGTCCACACCCACATCATCAAGACCGGCCTCCACAACACCCACTTTGCTATGAGCAAGCTCATTGAGTTTTGCGCCGTTTCGCAATTTGGGGACCTCTCCTATGCCCTGTCGGTCTTCGAATGCGTTGAGAATCCGAACCAGATTATTTGGAACACAATTATTCGAGGCTATTCCTTGAGCTCGAAGCCATTACAGGCCGTGGAGTTCTATGCAAGGATGATTGTCTCGGGTGCTGAGCCGAATTCTTACACATTCCCTTTTGTTTTGAAGTCTTGTGCGAAAGTTGGGGCAGCTCAGGAAGGGAAGCAGGTCCATGGGCATGTGTTGAAGCATGGAGTTGGCTCTGATGCGTTTGTGCACACTTCTCTGATCAACATGTATGCGAAAAGTGGTGAATTGGATAATGCAAGGTTGGTTTTTGATAAAAGTCATCTGAGAGATGCGGTTTCGTTTACTGCGTTGATTACTGGCTATGTTTCAAGTGGTTGTATGGATGATGCCCGCAGCTTGTTTGATGAAATCTTAGTAAGAGATGCGGTGTCTTGGAATGCAATGATTTCTGGGTATGCTCAGAGCGGCCGGTTTGAGGAAGCGTTGGCTTTGTTTTCAGATATGCGAAAAGCAAATGTGGTACCTAATGAGAGTACTATGCTTACTGTGCTTTCTGCTTGTGCTCAGTCGGGGTCACTTGAATTGGGAAAATGGGTCGCTTCTTGGATTGAAGACCAGGGACTTGGCTCAAATGTTAGGCTTGTTAATGCACTTATTGATATGTACTCAAAGTGTGGTGCTTTGGACACAGCTAGAGGTTTATTTGATGGTATGCAACAGAGGGATGTGATATCATGGAATGTTATGATTGGTGGTTATACACATAAGAGCCAGTACAAGGAAGCCTTGGCACTCTTTCGGTTAATGCTACGTTCAAATGCAGAGCCTAATGATGTCACATTCTTGGGCATTCTTCCGGCTTGTGCTCATTTGGGAGCTCTTGACCTTGGCAAATGGATTCATGTTTATATAGATAAGAAGTTGCAGGGTTTGACCAATACATCTCTCCAGACCAGTCTCATAGACATGTATGCAAAATGCGGAAACATCGAGGCAGCAAAACAAGTCTTTGATGGTATGGAAGCCAAAAGCTTGGCCTCTTGGAATGCAATGATAACTGGCTTAGCAATGCATGGGAAAGCAAATGCAGCACTTGAGCTTTTCTCCAAGATGGCTGATGAAGGATTCAAACCAGATGATATCACATTTGTGGGAGTTTTATCGGCTTGCAACCATGGTGGTCTAGTAGACCTTGGACGCCAATATTTTAGTTCCATGACCAAAGACTATTATATTTCACCGCAACTACAACACTATGGATGTATGATAGATCTTCTAGGACGAGCTGGGCTACTTGATGAAGCAGAGGCCCTAATGAAGACCATGGAGATGAAGCCAGATGTGCATCCTTTAAGTGAAGAAATCTATGAGATGTTGAAAGAAATGGATAGGCTTTTGGATATGGCTGGTTTTGTGCCTGATACATCTGAGGTACTCTATGATATGGATGAGGAATGGAAGGAAGGGATTTTGAGTCATCATAGTGAGAAGTTGGCCATTGCTTTTGGTTTGATCAGCACAAAGCCAGGCACAACTATTCGAATTGTAAAGAATCTTCGAGTATGTGGAAATTGTCATTCAGCTACAAAGCTGATATCCAAGATCTTCAATAGGGAAATTATTGCAAGAGATAGGAATCGCTTCCACCATTTTAGAGATGGTTCTTGTTCATGTAATGACAATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

652

Amino Acids

71.96

Weight (kDa)

6.15

Isoelectric Point (pI)

38.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	97 - 146	4.8e-09	PPR repeat family
PPR_1	PF12854	228 - 258	1.7e-06	PPR repeat
PPR_2	PF13041	230 - 277	3e-14	PPR repeat family
PPR	PF01535	232 - 261	3.7e-10	PPR repeat
PPR_2	PF13041	330 - 379	5.7e-11	PPR repeat family
PPR	PF01535	333 - 361	6.2e-06	PPR repeat
PPR_2	PF13041	435 - 479	1.3e-10	PPR repeat family
PPR	PF01535	436 - 465	3.2e-06	PPR repeat
DYW_deaminase	PF14432	559 - 651	1.5e-40	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08070 AT1G08070
fragaria_vesca	FvH4_1g03710 FvH4_1g04070
malus_domestica	MD02G1039500.v1.1 MD15G1176200.v1.1 MD15G1180300.v1.1
prunus_persica	Prupe.7G236200_v2.0.a1 Prupe.7G239300_v2.0.a1
pyrus_communis	pycom02g03280 pycom15g15800 pycom15g16170 pycom15g16180
rosa_chinensis	RchiOBHm_Chr2g0089161 RchiOBHm_Chr2g0089561
rosa_laevigata	RLG00000015999 RLG00000016040
rosa_multiflora	Rmu_co8347093.1_g000001 Rmu_sc0006193.1_g000005 Rmu_sc0008909.1_g000002 Rmu_sc0023591.1_g000001
rosa_rugosa	Rorug01G0488000 Rorug02G0001500
rosa_samantha	Rh2AG043600 Rh2BG042300 Rh2CG043600 Rh2CG047500 Rh2DG042700
rosa_wichuraiana	Rw2G003400 Rw2G003590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	454
Acc65I	GGTACC	1 cut(s)	787
AccB1I	GGYRCC	1 cut(s)	787
AccBSI	CCGCTC	1 cut(s)	732
AccI	GTMKAC	1 cut(s)	1455
AciI	CCGC	7 cut(s)	69, 599, 658, 692, 732, 1248, 1508
AclWI	GGATC	1 cut(s)	71
AcoI	YGGCCR	2 cut(s)	733, 1761
AcsI	RAATTY	1 cut(s)	397
AcyI	GRCGYC	1 cut(s)	1465
AfaI	GTAC	6 cut(s)	86, 789, 802, 932, 1043, 1701
AfiI	CCNNNNNNNGG	2 cut(s)	742, 1045
AflIII	ACRYGT	2 cut(s)	531, 1233
AgsI	TTSAA	9 cut(s)	424, 484, 636, 848, 878, 1083, 1396, 1645, 1876
AjiI	CACGTC	1 cut(s)	61
AjnI	CCWGG	2 cut(s)	882, 1792
AleI	CACNNNNGTG	1 cut(s)	1415
Alw21I	GWGCWC	5 cut(s)	338, 516, 832, 1135, 1147
Alw26I	GTCTC	2 cut(s)	385, 1229
Alw44I	GTGCAC	1 cut(s)	512
AlwI	GGATC	1 cut(s)	71
Ama87I	CYCGRG	1 cut(s)	382
AoxI	GGCC	6 cut(s)	181, 351, 733, 1302, 1575, 1761
ApaLI	GTGCAC	1 cut(s)	512
ApeKI	GCWGC	4 cut(s)	446, 660, 1262, 1355
ApoI	RAATTY	1 cut(s)	397
Asp700I	GAANNNNTTC	1 cut(s)	1907
Asp718I	GGTACC	1 cut(s)	787
AspLEI	GCGC	1 cut(s)	230
AspS9I	GGNCC	3 cut(s)	247, 466, 1576
AsuHPI	GGTGA	2 cut(s)	560, 1497
AsuII	TTCGAA	2 cut(s)	273, 1807
AvaI	CYCGRG	1 cut(s)	382
AvaII	GGWCC	2 cut(s)	247, 466
BaeGI	GKGCMC	1 cut(s)	516
BalI	TGGCCA	1 cut(s)	1763
BanI	GGYRCC	1 cut(s)	787
BanII	GRGCYC	2 cut(s)	338, 1147
BarI	GAAGNNNNNNTAC	2 cut(s)	1806, 1838
BbsI	GAAGAC	4 cut(s)	18, 262, 885, 1592
Bbv12I	GWGCWC	5 cut(s)	338, 516, 832, 1135, 1147
BbvI	GCAGC	4 cut(s)	458, 672, 1274, 1367
BccI	CCATC	5 cut(s)	115, 968, 1274, 1372, 1919
BceAI	ACGGC	2 cut(s)	215, 338
BciT130I	CCWGG	2 cut(s)	884, 1794
BclI	TGATCA	2 cut(s)	525, 1779
BcoDI	GTCTC	2 cut(s)	385, 1229
BfaI	CTAG	3 cut(s)	960, 1451, 1544
BfuAI	ACCTGC	1 cut(s)	454
BglII	AGATCT	2 cut(s)	1537, 1869
BisI	GCNGC	5 cut(s)	447, 661, 733, 1263, 1356
BlpI	GCTNAGC	2 cut(s)	390, 1330
BlsI	GCNGC	5 cut(s)	448, 662, 734, 1264, 1357
BmcAI	AGTACT	1 cut(s)	802
Bme1390I	CCNGG	2 cut(s)	884, 1794
Bme18I	GGWCC	2 cut(s)	247, 466
BmeT110I	CYCGRG	1 cut(s)	382
BmgBI	CACGTC	1 cut(s)	61
BmgT120I	GGNCC	3 cut(s)	247, 466, 1576
BmiI	GGNNCC	2 cut(s)	248, 789
BmrFI	CCNGG	2 cut(s)	884, 1794
BmsI	GCATC	6 cut(s)	147, 493, 586, 643, 679, 1621
BpiI	GAAGAC	4 cut(s)	18, 262, 885, 1592
BplI	GAGNNNNNCTC	2 cut(s)	1355, 1387
BpmI	CTGGAG	1 cut(s)	1199
Bpu10I	CCTNAGC	1 cut(s)	450
Bpu1102I	GCTNAGC	2 cut(s)	390, 1330
Bpu14I	TTCGAA	2 cut(s)	273, 1807
BpuEI	CTTGAG	2 cut(s)	352, 1382
BsaBI	GATNNNNATC	2 cut(s)	1611, 1902
BsaHI	GRCGYC	1 cut(s)	1465
BsaJI	CCNNGG	8 cut(s)	354, 469, 883, 1053, 1153, 1441, 1459, 1590
Bsc4I	CCNNNNNNNGG	2 cut(s)	742, 1045
Bse118I	RCCGGY	2 cut(s)	179, 735
Bse1I	ACTGG	4 cut(s)	628, 1039, 1221, 1330
Bse3DI	GCAATG	4 cut(s)	714, 1323, 1341, 1764
Bse8I	GATNNNNATC	2 cut(s)	1611, 1902
BseBI	CCWGG	2 cut(s)	884, 1794
BseDI	CCNNGG	8 cut(s)	354, 469, 883, 1053, 1153, 1441, 1459, 1590
BseGI	GGATG	7 cut(s)	138, 378, 655, 997, 1532, 1612, 1720
BseJI	GATNNNNATC	2 cut(s)	1611, 1902
BseLI	CCNNNNNNNGG	2 cut(s)	742, 1045
BseMI	GCAATG	4 cut(s)	714, 1323, 1341, 1764
BseMII	CTCAG	6 cut(s)	381, 464, 581, 740, 845, 1686
BseNI	ACTGG	4 cut(s)	628, 1039, 1221, 1330
BseRI	GAGGAG	2 cut(s)	83, 110
BseSI	GKGCMC	1 cut(s)	516
BseX3I	CGGCCG	1 cut(s)	733
BseXI	GCAGC	4 cut(s)	458, 672, 1274, 1367
BseYI	CCCAGC	1 cut(s)	1553
Bsh1285I	CGRYCG	1 cut(s)	736
BshFI	GGCC	6 cut(s)	183, 353, 735, 1304, 1577, 1763
BshNI	GGYRCC	1 cut(s)	787
BsiEI	CGRYCG	1 cut(s)	736
BsiHKAI	GWGCWC	5 cut(s)	338, 516, 832, 1135, 1147
BsiHKCI	CYCGRG	1 cut(s)	382
BsiSI	CCGG	3 cut(s)	180, 736, 1124
BslFI	GGGAC	2 cut(s)	260, 900
BslI	CCNNNNNNNGG	2 cut(s)	742, 1045
BsmAI	GTCTC	2 cut(s)	385, 1229
BsmFI	GGGAC	2 cut(s)	260, 900
BsmI	GAATGC	4 cut(s)	281, 709, 1116, 1318
BsnI	GGCC	6 cut(s)	183, 353, 735, 1304, 1577, 1763
BsoBI	CYCGRG	1 cut(s)	382
Bsp119I	TTCGAA	2 cut(s)	273, 1807
Bsp1286I	GDGCHC	5 cut(s)	338, 516, 832, 1135, 1147
Bsp143I	GATC	5 cut(s)	76, 525, 1537, 1779, 1869
Bsp1720I	GCTNAGC	2 cut(s)	390, 1330
Bsp19I	CCATGG	3 cut(s)	469, 1441, 1590
BspACI	CCGC	7 cut(s)	69, 599, 658, 692, 732, 1248, 1508
BspANI	GGCC	6 cut(s)	183, 353, 735, 1304, 1577, 1763
BspCNI	CTCAG	6 cut(s)	382, 463, 582, 739, 844, 1687
BspLI	GGNNCC	2 cut(s)	248, 789
BspMI	ACCTGC	1 cut(s)	454
BspPI	GGATC	1 cut(s)	71
BspT104I	TTCGAA	2 cut(s)	273, 1807
BspT107I	GGYRCC	1 cut(s)	787
BsrBI	CCGCTC	1 cut(s)	732
BsrDI	GCAATG	4 cut(s)	714, 1323, 1341, 1764
BsrFI	RCCGGY	2 cut(s)	179, 735
BsrI	ACTGG	4 cut(s)	628, 1039, 1221, 1330
BssAI	RCCGGY	2 cut(s)	179, 735
BssECI	CCNNGG	8 cut(s)	354, 469, 883, 1053, 1153, 1441, 1459, 1590
BssMI	GATC	5 cut(s)	76, 525, 1537, 1779, 1869
BssNI	GRCGYC	1 cut(s)	1465
BssT1I	CCWWGG	6 cut(s)	469, 1053, 1153, 1441, 1459, 1590
Bst2UI	CCWGG	2 cut(s)	884, 1794
Bst4CI	ACNGT	1 cut(s)	814
BstACI	GRCGYC	1 cut(s)	1465
BstBI	TTCGAA	2 cut(s)	273, 1807
BstC8I	GCNNGC	3 cut(s)	212, 658, 1435
BstDEI	CTNAG	8 cut(s)	390, 450, 590, 679, 726, 831, 1330, 1695
BstDSI	CCRYGG	4 cut(s)	354, 469, 1441, 1590
BstF5I	GGATG	7 cut(s)	138, 378, 655, 997, 1532, 1612, 1720
BstHHI	GCGC	1 cut(s)	230
BstKTI	GATC	5 cut(s)	79, 528, 1540, 1782, 1872
BstMAI	GTCTC	2 cut(s)	385, 1229
BstMBI	GATC	5 cut(s)	76, 525, 1537, 1779, 1869
BstMCI	CGRYCG	1 cut(s)	736
BstMWI	GCNNNNNNNGC	3 cut(s)	814, 1355, 1609
BstNI	CCWGG	2 cut(s)	884, 1794
BstNSI	RCATGY	3 cut(s)	479, 535, 1237
BstSCI	CCNGG	2 cut(s)	882, 1792
BstSLI	GKGCMC	1 cut(s)	516
BstV1I	GCAGC	4 cut(s)	458, 672, 1274, 1367
BstV2I	GAAGAC	4 cut(s)	18, 262, 885, 1592
BstX2I	RGATCY	2 cut(s)	1537, 1869
BstXI	CCANNNNNNTGG	2 cut(s)	890, 1300
BstYI	RGATCY	2 cut(s)	1537, 1869
BstZI	CGGCCG	1 cut(s)	733
BsuRI	GGCC	6 cut(s)	183, 353, 735, 1304, 1577, 1763
BtgI	CCRYGG	4 cut(s)	354, 469, 1441, 1590
BtrI	CACGTC	1 cut(s)	61
BtsCI	GGATG	7 cut(s)	138, 378, 655, 997, 1532, 1612, 1720
BveI	ACCTGC	1 cut(s)	454
Cac8I	GCNNGC	3 cut(s)	212, 658, 1435
CfoI	GCGC	1 cut(s)	230
Cfr10I	RCCGGY	2 cut(s)	179, 735
Cfr13I	GGNCC	3 cut(s)	247, 466, 1576
CseI	GACGC	1 cut(s)	1473
Csp6I	GTAC	6 cut(s)	85, 788, 801, 931, 1042, 1700
CspCI	CAANNNNNGTGG	2 cut(s)	1426, 1461
CviQI	GTAC	6 cut(s)	85, 788, 801, 931, 1042, 1700
DdeI	CTNAG	8 cut(s)	390, 450, 590, 679, 726, 831, 1330, 1695
DpnI	GATC	5 cut(s)	78, 527, 1539, 1781, 1871
DpnII	GATC	5 cut(s)	76, 525, 1537, 1779, 1869
EaeI	YGGCCR	2 cut(s)	733, 1761
EagI	CGGCCG	1 cut(s)	733
Ecl136II	GAGCTC	2 cut(s)	336, 1145
EclXI	CGGCCG	1 cut(s)	733
Eco130I	CCWWGG	6 cut(s)	469, 1053, 1153, 1441, 1459, 1590
Eco24I	GRGCYC	2 cut(s)	338, 1147
Eco32I	GATATC	3 cut(s)	999, 1408, 1863
Eco47I	GGWCC	2 cut(s)	247, 466
Eco52I	CGGCCG	1 cut(s)	733
Eco53kI	GAGCTC	2 cut(s)	336, 1145
Eco88I	CYCGRG	1 cut(s)	382
EcoICRI	GAGCTC	2 cut(s)	336, 1145
EcoO109I	RGGNCCY	2 cut(s)	247, 1576
EcoRI	GAATTC	1 cut(s)	397
EcoRII	CCWGG	2 cut(s)	882, 1792
EcoRV	GATATC	3 cut(s)	999, 1408, 1863
EcoT14I	CCWWGG	6 cut(s)	469, 1053, 1153, 1441, 1459, 1590
EcoT22I	ATGCAT	1 cut(s)	1341
EcoT38I	GRGCYC	2 cut(s)	338, 1147
ErhI	CCWWGG	6 cut(s)	469, 1053, 1153, 1441, 1459, 1590
FalI	AAGNNNNNCTT	2 cut(s)	1037, 1069
FaqI	GGGAC	2 cut(s)	260, 900
FauI	CCCGC	2 cut(s)	76, 665
FbaI	TGATCA	2 cut(s)	525, 1779
FblI	GTMKAC	1 cut(s)	1455
Fnu4HI	GCNGC	5 cut(s)	447, 661, 733, 1263, 1356
FokI	GGATG	7 cut(s)	125, 385, 662, 1004, 1539, 1599, 1727
FriOI	GRGCYC	2 cut(s)	338, 1147
Fsp4HI	GCNGC	5 cut(s)	447, 661, 733, 1263, 1356
FspBI	CTAG	3 cut(s)	960, 1451, 1544
GlaI	GCGC	1 cut(s)	229
GluI	GCNGC	5 cut(s)	447, 661, 733, 1263, 1356
GsaI	CCCAGC	1 cut(s)	1557
GsuI	CTGGAG	1 cut(s)	1199
HaeIII	GGCC	6 cut(s)	183, 353, 735, 1304, 1577, 1763
HapII	CCGG	3 cut(s)	180, 736, 1124
HgaI	GACGC	1 cut(s)	1473
HhaI	GCGC	1 cut(s)	230
Hin1I	GRCGYC	1 cut(s)	1465
Hin6I	GCGC	1 cut(s)	228
HinP1I	GCGC	1 cut(s)	228
HindIII	AAGCTT	1 cut(s)	1297
HinfI	GANTC	6 cut(s)	286, 1165, 1392, 1741, 1819, 1903
HpaII	CCGG	3 cut(s)	180, 736, 1124
HphI	GGTGA	2 cut(s)	560, 1497
Hpy166II	GTNNAC	4 cut(s)	160, 514, 609, 1456
Hpy188I	TCNGA	8 cut(s)	76, 291, 502, 525, 591, 729, 766, 1696
Hpy188III	TCNNGA	4 cut(s)	175, 452, 1148, 1216
Hpy8I	GTNNAC	4 cut(s)	160, 514, 609, 1456
HpyAV	CCTTC	4 cut(s)	449, 1382, 1720, 1724
HpyCH4III	ACNGT	1 cut(s)	814
HpyCH4IV	ACGT	2 cut(s)	60, 1078
HpyF10VI	GCNNNNNNNGC	3 cut(s)	814, 1355, 1609
HpyF3I	CTNAG	8 cut(s)	390, 450, 590, 679, 726, 831, 1330, 1695
HpySE526I	ACGT	2 cut(s)	60, 1078
Hsp92I	GRCGYC	1 cut(s)	1465
HspAI	GCGC	1 cut(s)	228
KpnI	GGTACC	1 cut(s)	791
Ksp22I	TGATCA	2 cut(s)	525, 1779
Kzo9I	GATC	5 cut(s)	76, 525, 1537, 1779, 1869
LmnI	GCTCC	1 cut(s)	1142
Lsp1109I	GCAGC	4 cut(s)	458, 672, 1274, 1367
LweI	GCATC	6 cut(s)	147, 493, 586, 643, 679, 1621
MaeI	CTAG	3 cut(s)	960, 1451, 1544
MaeII	ACGT	2 cut(s)	60, 1078
MaeIII	GTNAC	2 cut(s)	840, 1102
MalI	GATC	5 cut(s)	78, 527, 1539, 1781, 1871
MbiI	CCGCTC	1 cut(s)	732
MboI	GATC	5 cut(s)	76, 525, 1537, 1779, 1869
MfeI	CAATTG	1 cut(s)	1948
MflI	RGATCY	2 cut(s)	1537, 1869
MhlI	GDGCHC	5 cut(s)	338, 516, 832, 1135, 1147
MlsI	TGGCCA	1 cut(s)	1763
MluCI	AATT	9 cut(s)	239, 312, 397, 551, 848, 1809, 1837, 1884, 1948
MluNI	TGGCCA	1 cut(s)	1763
MlyI	GAGTC	1 cut(s)	1750
Mox20I	TGGCCA	1 cut(s)	1763
Mph1103I	ATGCAT	1 cut(s)	1341
MroXI	GAANNNNTTC	1 cut(s)	1907
MscI	TGGCCA	1 cut(s)	1763
MseI	TTAA	3 cut(s)	912, 1070, 1619
MslI	CAYNNNNRTG	5 cut(s)	474, 1232, 1415, 1595, 1749
Msp20I	TGGCCA	1 cut(s)	1763
MspI	CCGG	3 cut(s)	180, 736, 1124
MspR9I	CCNGG	2 cut(s)	884, 1794
MunI	CAATTG	1 cut(s)	1948
Mva1269I	GAATGC	4 cut(s)	281, 709, 1116, 1318
MvaI	CCWGG	2 cut(s)	884, 1794
MwoI	GCNNNNNNNGC	3 cut(s)	814, 1355, 1609
NcoI	CCATGG	3 cut(s)	469, 1441, 1590
NdeII	GATC	5 cut(s)	76, 525, 1537, 1779, 1869
NlaIV	GGNNCC	2 cut(s)	248, 789
NmuCI	GTSAC	2 cut(s)	840, 1102
NsiI	ATGCAT	1 cut(s)	1341
NspI	RCATGY	3 cut(s)	479, 535, 1237
NspV	TTCGAA	2 cut(s)	273, 1807
OliI	CACNNNNGTG	1 cut(s)	1415
PciI	ACATGT	2 cut(s)	531, 1233
PcsI	WCGNNNNNNNCGW	1 cut(s)	611
PctI	GAATGC	4 cut(s)	281, 709, 1116, 1318
PdmI	GAANNNNTTC	1 cut(s)	1907
PfeI	GAWTC	5 cut(s)	286, 1165, 1392, 1819, 1903
PkrI	GCNGC	5 cut(s)	448, 662, 734, 1264, 1357
PleI	GAGTC	1 cut(s)	1749
PpsI	GAGTC	1 cut(s)	1749
PpuMI	RGGWCCY	1 cut(s)	247
PscI	ACATGT	2 cut(s)	531, 1233
Psp124BI	GAGCTC	2 cut(s)	338, 1147
Psp5II	RGGWCCY	1 cut(s)	247
Psp6I	CCWGG	2 cut(s)	882, 1792
PspFI	CCCAGC	1 cut(s)	1553
PspGI	CCWGG	2 cut(s)	882, 1792
PspN4I	GGNNCC	2 cut(s)	248, 789
PspPI	GGNCC	3 cut(s)	247, 466, 1576
PspPPI	RGGWCCY	1 cut(s)	247
PsuI	RGATCY	2 cut(s)	1537, 1869
RsaI	GTAC	6 cut(s)	86, 789, 802, 932, 1043, 1701
RsaNI	GTAC	6 cut(s)	85, 788, 801, 931, 1042, 1700
RseI	CAYNNNNRTG	5 cut(s)	474, 1232, 1415, 1595, 1749
SacI	GAGCTC	2 cut(s)	338, 1147
SaqAI	TTAA	3 cut(s)	912, 1070, 1619
SatI	GCNGC	5 cut(s)	447, 661, 733, 1263, 1356
Sau3AI	GATC	5 cut(s)	76, 525, 1537, 1779, 1869
Sau96I	GGNCC	3 cut(s)	247, 466, 1576
ScaI	AGTACT	1 cut(s)	802
SchI	GAGTC	1 cut(s)	1750
ScrFI	CCNGG	2 cut(s)	884, 1794
SduI	GDGCHC	5 cut(s)	338, 516, 832, 1135, 1147
SfaNI	GCATC	6 cut(s)	147, 493, 586, 643, 679, 1621
SfuI	TTCGAA	2 cut(s)	273, 1807
SinI	GGWCC	2 cut(s)	247, 466
SmiMI	CAYNNNNRTG	5 cut(s)	474, 1232, 1415, 1595, 1749
SmlI	CTYRAG	2 cut(s)	331, 1361
SmoI	CTYRAG	2 cut(s)	331, 1361
Sse9I	AATT	9 cut(s)	239, 312, 397, 551, 848, 1809, 1837, 1884, 1948
SsiI	CCGC	7 cut(s)	69, 599, 658, 692, 732, 1248, 1508
SspI	AATATT	1 cut(s)	1472
SspMI	CTAG	3 cut(s)	960, 1451, 1544
SstI	GAGCTC	2 cut(s)	338, 1147
StyD4I	CCNGG	2 cut(s)	882, 1792
StyI	CCWWGG	6 cut(s)	469, 1053, 1153, 1441, 1459, 1590
TaaI	ACNGT	1 cut(s)	814
TaiI	ACGT	2 cut(s)	63, 1081
TaqI	TCGA	6 cut(s)	273, 319, 338, 1257, 1807, 1825
TaqII	GACCGA	1 cut(s)	256
TasI	AATT	9 cut(s)	239, 312, 397, 551, 848, 1809, 1837, 1884, 1948
TatI	WGTACW	3 cut(s)	800, 930, 1041
TauI	GCSGC	1 cut(s)	735
TfiI	GAWTC	5 cut(s)	286, 1165, 1392, 1819, 1903
Tru1I	TTAA	3 cut(s)	912, 1070, 1619
Tru9I	TTAA	3 cut(s)	912, 1070, 1619
TseFI	GTSAC	2 cut(s)	840, 1102
TseI	GCWGC	4 cut(s)	446, 660, 1262, 1355
Tsp45I	GTSAC	2 cut(s)	840, 1102
TspDTI	ATGAA	8 cut(s)	6, 687, 1157, 1401, 1581, 1598, 1613, 1926
TspGWI	ACGGA	1 cut(s)	72
VneI	GTGCAC	1 cut(s)	512
VpaK11BI	GGWCC	2 cut(s)	247, 466
XapI	RAATTY	1 cut(s)	397
XceI	RCATGY	3 cut(s)	479, 535, 1237
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1922
XmiI	GTMKAC	1 cut(s)	1455
XmnI	GAANNNNTTC	1 cut(s)	1907
XspI	CTAG	3 cut(s)	960, 1451, 1544
ZrmI	AGTACT	1 cut(s)	802
Zsp2I	ATGCAT	1 cut(s)	1341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.