Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005071

Physical Location & Seq

Genomic Coordinates Reverse (-)

11305612 .. 11306724

Gene Structure 1113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g16170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGAACATGTATGTGAATTGCGGGTGTTTTGTCTCCGCTCAGAAGGTGTTCGACAAAATGACTGAGAAGAGTGTGGATTCTTGGGCAACCATGATTGACGCGTATGCTAAATGGGATCGACCAGTTGAAGCTTTGAAATTGTTGGGTAGGATGGAATGTGAAAATGTGGATTTTAATGAGGTCACTTTGGTTAATGTTTTGACTGTGTGTGCAAGGGCGAGGGATTTAGACATGGCAAAAAGGGAGCACCGGTACATTGATTATTTATTGCTTGCTTGCAGCCATTTGGGTGCTCTAGAGCTCGGTAAGTGGTTGCATGTATATATTGAAAAGGAGAACATTAAGGTGGACATTGCCCTCGGGACGACTTTAGTTGACATGTATGCAAAATGTGGGAGCATGGACAATGCATGGGAAATTTTCCGAAAGCTACCCAAGAAGGATGTTATGACTTGGACAGCTTTGATTTCGGTTTTGGCATTGTGCGGACAAGGGAAGAAGGCTTTGGAGCATTTCCATGAGATGCAGAAGAGTGGGTTGAAACCAGATGCGATAACCTTTGTTGGGGTATTGGCTGCTTGTAGTCATGCTGGATTAGTAGACGAAGTGATTTCGCATTTTAACTCAATGTCTGAAGTGTACGGCATTCAGCCTACCATTGAACACTATGGTGGTATGGTTGACATCTCAGGGGAAGCTGATCGAATTGCCGAAGCAGAAGAGTTGACTCGGAGGATGCAAATTCCACTGGACCGTTCTGTTTTGGGAGGGCTTCTTGGTTCCTGCAAAGTCCATGGCAAACTTGAGGCTGCAGAAAGAGTTGCTCAACAGCTTTTAGAACTTGACCCGAACGATGATGGAGCGTTTGTTCTTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

293

Amino Acids

32.56

Weight (kDa)

5.32

Isoelectric Point (pI)

25.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	147 - 195	1.2e-10	PPR repeat family
PPR_3	PF13812	147 - 194	2.1e-06	Pentatricopeptide repeat domain
PPR	PF01535	151 - 180	3.6e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08070 AT1G08070
fragaria_vesca	FvH4_1g03710 FvH4_1g04070
malus_domestica	MD02G1039500.v1.1 MD15G1176200.v1.1 MD15G1180300.v1.1
prunus_persica	Prupe.7G236200_v2.0.a1 Prupe.7G239300_v2.0.a1
pyrus_communis	pycom02g03280 pycom15g15800 pycom15g16170 pycom15g16180
rosa_chinensis	RchiOBHm_Chr2g0089161 RchiOBHm_Chr2g0089561
rosa_laevigata	RLG00000015999 RLG00000016040
rosa_multiflora	Rmu_co8347093.1_g000001 Rmu_sc0006193.1_g000005 Rmu_sc0008909.1_g000002 Rmu_sc0023591.1_g000001
rosa_rugosa	Rorug01G0488000 Rorug02G0001500
rosa_samantha	Rh2AG043600 Rh2BG042300 Rh2CG043600 Rh2CG047500 Rh2DG042700
rosa_wichuraiana	Rw2G003400 Rw2G003590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	38
AccI	GTMKAC	1 cut(s)	600
AccII	CGCG	1 cut(s)	101
AciI	CCGC	3 cut(s)	21, 36, 486
AclWI	GGATC	1 cut(s)	123
AcsI	RAATTY	2 cut(s)	417, 741
AcuI	CTGAAG	1 cut(s)	654
AfaI	GTAC	2 cut(s)	254, 641
AfiI	CCNNNNNNNGG	1 cut(s)	564
AflIII	ACRYGT	3 cut(s)	6, 99, 378
AgeI	ACCGGT	1 cut(s)	249
AgsI	TTSAA	5 cut(s)	128, 136, 329, 541, 662
AjuI	GAANNNNNNNTTGG	2 cut(s)	488, 520
AleI	CACNNNNGTG	1 cut(s)	669
AloI	GAACNNNNNNTCC	1 cut(s)	852
AluBI	AGCT	6 cut(s)	131, 301, 430, 461, 698, 832
AluI	AGCT	6 cut(s)	131, 301, 430, 461, 698, 832
Alw21I	GWGCWC	3 cut(s)	249, 295, 303
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	1 cut(s)	123
Ama87I	CYCGRG	1 cut(s)	359
ApeKI	GCWGC	3 cut(s)	279, 575, 809
ApoI	RAATTY	2 cut(s)	417, 741
AsiGI	ACCGGT	1 cut(s)	249
Asp700I	GAANNNNTTC	1 cut(s)	47
AspS9I	GGNCC	1 cut(s)	751
AvaI	CYCGRG	1 cut(s)	359
AvaII	GGWCC	1 cut(s)	751
BanII	GRGCYC	1 cut(s)	303
Bbv12I	GWGCWC	3 cut(s)	249, 295, 303
BbvI	GCAGC	3 cut(s)	291, 562, 796
BccI	CCATC	2 cut(s)	145, 851
BceAI	ACGGC	1 cut(s)	658
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	1 cut(s)	296
BfmI	CTRYAG	1 cut(s)	810
BisI	GCNGC	3 cut(s)	280, 576, 810
BlsI	GCNGC	3 cut(s)	281, 577, 811
Bme18I	GGWCC	1 cut(s)	751
BmeT110I	CYCGRG	1 cut(s)	359
BmgT120I	GGNCC	1 cut(s)	751
BmiI	GGNNCC	1 cut(s)	781
BmsI	GCATC	3 cut(s)	513, 538, 726
BpuEI	CTTGAG	1 cut(s)	824
BsaJI	CCNNGG	2 cut(s)	358, 793
BsaWI	WCCGGW	1 cut(s)	249
BsaXI	ACNNNNNCTCC	3 cut(s)	236, 266, 852
Bsc4I	CCNNNNNNNGG	1 cut(s)	564
Bse118I	RCCGGY	1 cut(s)	249
Bse1I	ACTGG	2 cut(s)	122, 753
Bse3DI	GCAATG	1 cut(s)	351
BseDI	CCNNGG	2 cut(s)	358, 793
BseGI	GGATG	3 cut(s)	156, 448, 741
BseLI	CCNNNNNNNGG	1 cut(s)	564
BseMI	GCAATG	1 cut(s)	351
BseMII	CTCAG	3 cut(s)	53, 54, 702
BseNI	ACTGG	2 cut(s)	122, 753
BseXI	GCAGC	3 cut(s)	291, 562, 796
Bsh1236I	CGCG	1 cut(s)	101
BshTI	ACCGGT	1 cut(s)	249
BsiHKAI	GWGCWC	3 cut(s)	249, 295, 303
BsiHKCI	CYCGRG	1 cut(s)	359
BsiSI	CCGG	1 cut(s)	250
BslFI	GGGAC	1 cut(s)	376
BslI	CCNNNNNNNGG	1 cut(s)	564
BsmAI	GTCTC	1 cut(s)	37
BsmFI	GGGAC	1 cut(s)	376
BsmI	GAATGC	1 cut(s)	645
BsoBI	CYCGRG	1 cut(s)	359
Bsp1286I	GDGCHC	3 cut(s)	249, 295, 303
Bsp143I	GATC	2 cut(s)	115, 700
Bsp19I	CCATGG	1 cut(s)	793
BspACI	CCGC	3 cut(s)	21, 36, 486
BspCNI	CTCAG	3 cut(s)	52, 55, 701
BspFNI	CGCG	1 cut(s)	101
BspLI	GGNNCC	1 cut(s)	781
BspMAI	CTGCAG	1 cut(s)	814
BspPI	GGATC	1 cut(s)	123
BsrBI	CCGCTC	1 cut(s)	38
BsrDI	GCAATG	1 cut(s)	351
BsrFI	RCCGGY	1 cut(s)	249
BsrI	ACTGG	2 cut(s)	122, 753
BssAI	RCCGGY	1 cut(s)	249
BssECI	CCNNGG	2 cut(s)	358, 793
BssMI	GATC	2 cut(s)	115, 700
BssT1I	CCWWGG	1 cut(s)	793
Bst4CI	ACNGT	2 cut(s)	205, 755
Bst6I	CTCTTC	3 cut(s)	62, 524, 714
BstC8I	GCNNGC	2 cut(s)	273, 277
BstDEI	CTNAG	3 cut(s)	39, 63, 688
BstDSI	CCRYGG	1 cut(s)	793
BstF5I	GGATG	3 cut(s)	156, 448, 741
BstFNI	CGCG	1 cut(s)	101
BstKTI	GATC	2 cut(s)	118, 703
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	2 cut(s)	115, 700
BstNSI	RCATGY	3 cut(s)	10, 320, 382
BstSFI	CTRYAG	1 cut(s)	810
BstUI	CGCG	1 cut(s)	101
BstV1I	GCAGC	3 cut(s)	291, 562, 796
BtgI	CCRYGG	1 cut(s)	793
BtsCI	GGATG	3 cut(s)	156, 448, 741
BtsIMutI	CAGTG	1 cut(s)	746
Cac8I	GCNNGC	2 cut(s)	273, 277
Cfr10I	RCCGGY	1 cut(s)	249
Cfr13I	GGNCC	1 cut(s)	751
CseI	GACGC	1 cut(s)	107
Csp6I	GTAC	2 cut(s)	253, 640
CspAI	ACCGGT	1 cut(s)	249
CviQI	GTAC	2 cut(s)	253, 640
DdeI	CTNAG	3 cut(s)	39, 63, 688
DpnI	GATC	2 cut(s)	117, 702
DpnII	GATC	2 cut(s)	115, 700
Eam1104I	CTCTTC	3 cut(s)	62, 524, 714
EarI	CTCTTC	3 cut(s)	62, 524, 714
Ecl136II	GAGCTC	1 cut(s)	301
Eco130I	CCWWGG	1 cut(s)	793
Eco24I	GRGCYC	1 cut(s)	303
Eco47I	GGWCC	1 cut(s)	751
Eco53kI	GAGCTC	1 cut(s)	301
Eco57I	CTGAAG	1 cut(s)	654
Eco88I	CYCGRG	1 cut(s)	359
EcoICRI	GAGCTC	1 cut(s)	301
EcoT14I	CCWWGG	1 cut(s)	793
EcoT22I	ATGCAT	1 cut(s)	412
EcoT38I	GRGCYC	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	793
FaqI	GGGAC	1 cut(s)	376
FauI	CCCGC	1 cut(s)	14
FblI	GTMKAC	1 cut(s)	600
Fnu4HI	GCNGC	3 cut(s)	280, 576, 810
FokI	GGATG	3 cut(s)	163, 455, 748
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	3 cut(s)	280, 576, 810
FspBI	CTAG	1 cut(s)	296
GluI	GCNGC	3 cut(s)	280, 576, 810
HapII	CCGG	1 cut(s)	250
HgaI	GACGC	1 cut(s)	107
HincII	GTYRAC	3 cut(s)	376, 682, 726
HindII	GTYRAC	3 cut(s)	376, 682, 726
HindIII	AAGCTT	1 cut(s)	129
HinfI	GANTC	2 cut(s)	77, 727
HpaII	CCGG	1 cut(s)	250
Hpy166II	GTNNAC	6 cut(s)	349, 376, 601, 640, 682, 726
Hpy188I	TCNGA	4 cut(s)	42, 425, 634, 732
Hpy188III	TCNNGA	2 cut(s)	296, 361
Hpy8I	GTNNAC	6 cut(s)	349, 376, 601, 640, 682, 726
HpyAV	CCTTC	3 cut(s)	37, 433, 493
HpyCH4III	ACNGT	2 cut(s)	205, 755
HpyCH4V	TGCA	9 cut(s)	212, 279, 316, 386, 410, 526, 739, 786, 812
HpyF3I	CTNAG	3 cut(s)	39, 63, 688
Kzo9I	GATC	2 cut(s)	115, 700
LmnI	GCTCC	4 cut(s)	244, 396, 508, 860
LpnPI	CCDG	7 cut(s)	135, 263, 558, 576, 675, 734, 796
Lsp1109I	GCAGC	3 cut(s)	291, 562, 796
LweI	GCATC	3 cut(s)	513, 538, 726
MaeI	CTAG	1 cut(s)	296
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	2 cut(s)	117, 702
MbiI	CCGCTC	1 cut(s)	38
MboI	GATC	2 cut(s)	115, 700
MboII	GAAGA	5 cut(s)	79, 508, 541, 731, 863
MhlI	GDGCHC	3 cut(s)	249, 295, 303
MluCI	AATT	5 cut(s)	16, 137, 417, 705, 741
MluI	ACGCGT	1 cut(s)	99
MlyI	GAGTC	1 cut(s)	721
MnlI	CCTC	6 cut(s)	172, 213, 368, 726, 761, 799
Mph1103I	ATGCAT	1 cut(s)	412
MroXI	GAANNNNTTC	1 cut(s)	47
MseI	TTAA	4 cut(s)	174, 192, 342, 621
MslI	CAYNNNNRTG	5 cut(s)	11, 288, 344, 516, 669
MspI	CCGG	1 cut(s)	250
Mva1269I	GAATGC	1 cut(s)	645
MvnI	CGCG	1 cut(s)	101
NcoI	CCATGG	1 cut(s)	793
NdeII	GATC	2 cut(s)	115, 700
NlaIV	GGNNCC	1 cut(s)	781
NmuCI	GTSAC	1 cut(s)	181
NsiI	ATGCAT	1 cut(s)	412
NspI	RCATGY	3 cut(s)	10, 320, 382
OliI	CACNNNNGTG	1 cut(s)	669
PciI	ACATGT	2 cut(s)	6, 378
PctI	GAATGC	1 cut(s)	645
PdmI	GAANNNNTTC	1 cut(s)	47
PfeI	GAWTC	1 cut(s)	77
PinAI	ACCGGT	1 cut(s)	249
PkrI	GCNGC	3 cut(s)	281, 577, 811
PleI	GAGTC	1 cut(s)	721
PpsI	GAGTC	1 cut(s)	721
PscI	ACATGT	2 cut(s)	6, 378
Psp124BI	GAGCTC	1 cut(s)	303
PspN4I	GGNNCC	1 cut(s)	781
PspPI	GGNCC	1 cut(s)	751
PstI	CTGCAG	1 cut(s)	814
RsaI	GTAC	2 cut(s)	254, 641
RsaNI	GTAC	2 cut(s)	253, 640
RseI	CAYNNNNRTG	5 cut(s)	11, 288, 344, 516, 669
SacI	GAGCTC	1 cut(s)	303
SaqAI	TTAA	4 cut(s)	174, 192, 342, 621
SatI	GCNGC	3 cut(s)	280, 576, 810
Sau3AI	GATC	2 cut(s)	115, 700
Sau96I	GGNCC	1 cut(s)	751
SchI	GAGTC	1 cut(s)	721
SduI	GDGCHC	3 cut(s)	249, 295, 303
SfaNI	GCATC	3 cut(s)	513, 538, 726
SfcI	CTRYAG	1 cut(s)	810
SinI	GGWCC	1 cut(s)	751
SmiMI	CAYNNNNRTG	5 cut(s)	11, 288, 344, 516, 669
SmlI	CTYRAG	1 cut(s)	803
SmoI	CTYRAG	1 cut(s)	803
Sse9I	AATT	5 cut(s)	16, 137, 417, 705, 741
SsiI	CCGC	3 cut(s)	21, 36, 486
SspMI	CTAG	1 cut(s)	296
SstI	GAGCTC	1 cut(s)	303
StyI	CCWWGG	1 cut(s)	793
TaaI	ACNGT	2 cut(s)	205, 755
TaqI	TCGA	3 cut(s)	51, 118, 703
TasI	AATT	5 cut(s)	16, 137, 417, 705, 741
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	4 cut(s)	174, 192, 342, 621
Tru9I	TTAA	4 cut(s)	174, 192, 342, 621
TscAI	CASTG	1 cut(s)	753
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	3 cut(s)	279, 575, 809
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	753
VpaK11BI	GGWCC	1 cut(s)	751
XapI	RAATTY	2 cut(s)	417, 741
XbaI	TCTAGA	1 cut(s)	295
XceI	RCATGY	3 cut(s)	10, 320, 382
XmiI	GTMKAC	1 cut(s)	600
XmnI	GAANNNNTTC	1 cut(s)	47
XspI	CTAG	1 cut(s)	296
Zsp2I	ATGCAT	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.