MD02G1039500.v1.1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0005071
Physical Location & Seq
Reverse (-)
3203326 .. 3207354
4029 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1039500.v1.1.491

Sequence Viewer

Length: 2157 bp
ATGGCGGCTCCTCTTTCCCTCCACCACATTAGACCGCCTTTCAATTCCGACATCCCAGTCTCGTACACCAAACCCACCACAGCCACCGCCATCGCCGCCACGGCCGCCGTCGCGACCGTCACCAAAAACCCAATTGAACCGCACCCATGTCTCACATTACTAGACAAATGCTCTACGATGTCCGAGCTCAAGCAAATCCACGCCCAACTTCTCCGAACCGGGCTCTTCTTCGACGCCTTCACCGCCAGCAAAGTCGTCGCCTTTTCGGCTCTGGAAGGCTCGGGGAGCCTCCGTTATGCCCGTTTAGTCCTAAACCAAATCCCCAATCCCACCACTTATACTTGTAACTCGGTTATCCGTGGTTATACTAACAAGGATTTGAACCGGGACGCCATTCTTTTCTACCAAGAAATGATTTTGCAAGGTTGGGTGCCTGACAGTTTCACATTCCCATCTCTGTTCAAGTCGTGCGGGGATTTGCGTGAGGGAAAACAACTGCATTGCCACTCTACGAAGTTCGGTTTCGCTTCGGATTCATACATTCAGAACACCCTGATGAACATGTATGCGAATTGTGGTTGTTTGGTCTCCGCTCGGAAGGTGTTCGACAAAATGACTGAGAAGAGTGTGGTTTCTTGGGCAACCATGATTGACGCGTATGCGAAATGGGATAAACCCGTTGAAGCTTTGAAGTTATTTGAGAGGATGGAGAGTGAAAATGTGGATCCTAATGAGGTTACTTTGGTTAACGTCTTGACTGCATGTGCGAGGGCGAGGGATTTAGACATGGCGAAAAGGGTGCACCGATACATTGATGATTACGGTTTTGGGAGCCATTTAAAGCTCAATACGGCTCTCTTGGATGTTTATTGCAAGTGTGGATGTGTATCGCTTGCTCGAAATTTGTTTGACACGATGCGGGAGAAGAACTTGTTCAGTTGGAACATCATGATCAACGGACATGTTGAGGACAGTAACTACGATGAAGCGTTCCTCCTCTTTCGTGAAATGCAGCTCAAAGGAGAAAAGGGAGATCAGGTGACTATGGTGAGTTTGTTGCTTGCTTGCAGCCATTTGGGTGCTTTAGAGCTTGGTAAGTGGTTGCATGCCTATATAGAAAAGGAGAAAATTAAGGTTGACGTTGCCCTTGGGACGACGCTTGTTGACATGTATGCAAAATGTGGGAGCATAGACGATGCATTGGAGGTTTTCCGAAAGCTGCCTGAGAAGGATGTTATGACTTGGACAGCGTTGATTTCCGGTTTTGCGATGTGTGGACAAGGAAGGAAGGCTTTGGAGCATTTCCATGAGATGCAGAAGAGTGGGGTGAAACCAGATGCAATAACATTTGTTGGGGTATTGGCTGCTTGTAGTCATGCTGGATTAGTAGACGAGGGGATTTCGCATTTTAACTCAATGTCTGAAGTGTATGGCATTCAACCTAGCATTGAACACTATGGTGGTATGGTTGACATATTAGGCCGAGCTGGTCGCATTGCCGAAGCAGAGGAGTTGATTCGGAAGATGCAAATGCCGCCGGATCGTTTTGTTTTGGGAGGGCTTCTTGGTGCCTGCAGAGTCCATGGCAACCTTGAGGCTGCAGAAAGAGTTGCTCGACAGCTTCTAGAACTTGACCCGAACGATGATGGGGCGTATGTGCTTCTATCAAACTTATATAGCTCTATGAAGAAGTGGGATGAGGCCAAAAGAATCAGGGCACTCATGGCAGAAAGAAATGTAAAGAAAGCTCCAGGTTGCAGTCTGATTGAGGTTGATGGCATTGTCCATGAATTTGTGAAGGGCGATTCATCTCACCCGCAAACAACAAGTATCTATGAAATGCTGGAAGATATGATCAGCCGGTTGAAGAAAGCCGGTTATGTTCCTGAGAGATCCGAGGTGTTGTTGGATATAGATGAGGAAGAGAAGGAGACTGCACTCAGCCTCCACAGTGAAAAGCTGGCAATTGCATTTGGGCTCATAAGCACAAAACCGAGGACAACAATACGAGTTGTGAAAAACCTCAGAGTATGCAGCGATTGCCACACTGCAACCAAGCTCATCTCGAAAGTTTACAACAGAGAAATAATCGTGCGGGACAGAAACCGCTTTCATCGGTTTAGGGACGGATCTTGTTCTTGTAAGGATTTCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

719

Amino Acids

80.39

Weight (kDa)

6.75

Isoelectric Point (pI)

31.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 110 - 157 4.4e-08 PPR repeat family
PPR_2 PF13041 209 - 257 4.1e-10 PPR repeat family
PPR PF01535 211 - 241 3e-07 PPR repeat
PPR_2 PF13041 310 - 357 7.7e-09 PPR repeat family
PPR PF01535 312 - 341 2e-06 PPR repeat
PPR_2 PF13041 410 - 458 8.6e-12 PPR repeat family
PPR_3 PF13812 411 - 457 6.8e-06 Pentatricopeptide repeat domain
PPR PF01535 414 - 443 5.5e-07 PPR repeat
E_motif PF20431 528 - 590 7.7e-21 E motif
DYW_deaminase PF14432 626 - 718 3.2e-40 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 56
AccB1I GGYRCC 2 cut(s) 430, 1568
AccBSI CCGCTC 1 cut(s) 593
AccI GTMKAC 1 cut(s) 1389
AccII CGCG 2 cut(s) 113, 656
AclWI GGATC 5 cut(s) 719, 732, 1548, 1887, 2137
AcoI YGGCCR 1 cut(s) 102
AcsI RAATTY 2 cut(s) 901, 1790
AcuI CTGAAG 1 cut(s) 1443
AcyI GRCGYC 2 cut(s) 234, 390
AfaI GTAC 1 cut(s) 65
AflIII ACRYGT 4 cut(s) 561, 654, 961, 1167
AgsI TTSAA 9 cut(s) 43, 137, 382, 463, 683, 691, 1439, 1451, 1867
AjnI CCWGG 1 cut(s) 1750
AleI CACNNNNGTG 1 cut(s) 1458
Alw21I GWGCWC 2 cut(s) 189, 804
Alw26I GTCTC 4 cut(s) 64, 155, 592, 1925
Alw44I GTGCAC 1 cut(s) 800
AlwI GGATC 5 cut(s) 719, 732, 1548, 1887, 2137
Ama87I CYCGRG 1 cut(s) 280
AoxI GGCC 3 cut(s) 102, 1480, 1701
ApaLI GTGCAC 1 cut(s) 800
ApeKI GCWGC 6 cut(s) 1012, 1068, 1219, 1364, 1598, 2034
ApoI RAATTY 2 cut(s) 901, 1790
Asp700I GAANNNNTTC 2 cut(s) 602, 932
AsuC2I CCSGG 2 cut(s) 220, 386
AsuHPI GGTGA 6 cut(s) 112, 232, 1051, 1060, 1339, 1805
AvaI CYCGRG 1 cut(s) 280
BaeGI GKGCMC 2 cut(s) 804, 1720
BamHI GGATCC 1 cut(s) 724
BanI GGYRCC 2 cut(s) 430, 1568
BanII GRGCYC 3 cut(s) 189, 225, 1980
Bbv12I GWGCWC 2 cut(s) 189, 804
BbvI GCAGC 6 cut(s) 1024, 1080, 1206, 1351, 1585, 2046
BccI CCATC 5 cut(s) 98, 460, 700, 1640, 1769
BceAI ACGGC 3 cut(s) 92, 117, 867
BcgI CGANNNNNNTGC 4 cut(s) 238, 272, 781, 815
BciT130I CCWGG 1 cut(s) 1752
BclI TGATCA 2 cut(s) 951, 1854
BcnI CCSGG 2 cut(s) 220, 386
BcoDI GTCTC 4 cut(s) 64, 155, 592, 1925
BfaI CTAG 3 cut(s) 161, 1443, 1625
BfmI CTRYAG 2 cut(s) 1573, 1599
BglI GCCNNNNNGGC 2 cut(s) 101, 266
Bme1390I CCNGG 3 cut(s) 220, 386, 1752
BmeT110I CYCGRG 1 cut(s) 280
BmiI GGNNCC 6 cut(s) 9, 287, 432, 726, 833, 1570
BmrFI CCNGG 3 cut(s) 220, 386, 1752
BmrI ACTGGG 1 cut(s) 50
BmsI GCATC 5 cut(s) 906, 1186, 1302, 1327, 1515
BmuI ACTGGG 1 cut(s) 50
BpmI CTGGAG 1 cut(s) 1734
BpuEI CTTGAG 2 cut(s) 173, 1613
BpuMI CCSGG 2 cut(s) 220, 386
BsaBI GATNNNNATC 1 cut(s) 886
BsaHI GRCGYC 2 cut(s) 234, 390
BsaI GGTCTC 1 cut(s) 592
BsaJI CCNNGG 6 cut(s) 99, 358, 1147, 1582, 1896, 1994
BsaWI WCCGGW 1 cut(s) 1259
BsaXI ACNNNNNCTCC 6 cut(s) 277, 307, 1023, 1053, 1929, 1959
Bse118I RCCGGY 2 cut(s) 1860, 1874
Bse1I ACTGG 1 cut(s) 56
Bse3DI GCAATG 2 cut(s) 499, 1494
Bse8I GATNNNNATC 1 cut(s) 886
BseBI CCWGG 1 cut(s) 1752
BseDI CCNNGG 6 cut(s) 99, 358, 1147, 1582, 1896, 1994
BseGI GGATG 6 cut(s) 51, 711, 868, 887, 1237, 1702
BseJI GATNNNNATC 1 cut(s) 886
BseMI GCAATG 2 cut(s) 499, 1494
BseMII CTCAG 5 cut(s) 609, 1215, 1878, 1954, 2038
BseNI ACTGG 1 cut(s) 56
BseRI GAGGAG 2 cut(s) 986, 1523
BseSI GKGCMC 2 cut(s) 804, 1720
BseX3I CGGCCG 1 cut(s) 102
BseXI GCAGC 6 cut(s) 1024, 1080, 1206, 1351, 1585, 2046
BsgI GTGCAG 1 cut(s) 1920
Bsh1236I CGCG 2 cut(s) 113, 656
Bsh1285I CGRYCG 2 cut(s) 105, 117
BshFI GGCC 3 cut(s) 104, 1482, 1703
BshNI GGYRCC 2 cut(s) 430, 1568
BsiEI CGRYCG 2 cut(s) 105, 117
BsiHKAI GWGCWC 2 cut(s) 189, 804
BsiHKCI CYCGRG 1 cut(s) 280
BsiSI CCGG 6 cut(s) 219, 385, 1260, 1538, 1861, 1875
BslFI GGGAC 4 cut(s) 401, 1165, 2111, 2138
BsmAI GTCTC 4 cut(s) 64, 155, 592, 1925
BsmFI GGGAC 4 cut(s) 401, 1165, 2111, 2138
BsmI GAATGC 1 cut(s) 1434
BsnI GGCC 3 cut(s) 104, 1482, 1703
Bso31I GGTCTC 1 cut(s) 592
BsoBI CYCGRG 1 cut(s) 280
Bsp1286I GDGCHC 5 cut(s) 189, 225, 804, 1720, 1980
Bsp143I GATC 7 cut(s) 724, 951, 1033, 1540, 1854, 1892, 2129
Bsp19I CCATGG 1 cut(s) 1582
Bsp68I TCGCGA 1 cut(s) 113
BspANI GGCC 3 cut(s) 104, 1482, 1703
BspCNI CTCAG 5 cut(s) 610, 1216, 1879, 1953, 2037
BspFNI CGCG 2 cut(s) 113, 656
BspHI TCATGA 1 cut(s) 948
BspLI GGNNCC 6 cut(s) 9, 287, 432, 726, 833, 1570
BspMAI CTGCAG 2 cut(s) 1577, 1603
BspPI GGATC 5 cut(s) 719, 732, 1548, 1887, 2137
BspQI GCTCTTC 1 cut(s) 230
BspT107I GGYRCC 2 cut(s) 430, 1568
BspTNI GGTCTC 1 cut(s) 592
BsrBI CCGCTC 1 cut(s) 593
BsrDI GCAATG 2 cut(s) 499, 1494
BsrFI RCCGGY 2 cut(s) 1860, 1874
BsrI ACTGG 1 cut(s) 56
BssAI RCCGGY 2 cut(s) 1860, 1874
BssECI CCNNGG 6 cut(s) 99, 358, 1147, 1582, 1896, 1994
BssMI GATC 7 cut(s) 724, 951, 1033, 1540, 1854, 1892, 2129
BssNI GRCGYC 2 cut(s) 234, 390
BssT1I CCWWGG 2 cut(s) 1147, 1582
Bst2UI CCWGG 1 cut(s) 1752
Bst4CI ACNGT 5 cut(s) 118, 440, 824, 974, 1952
Bst6I CTCTTC 4 cut(s) 230, 617, 1313, 1917
BstACI GRCGYC 2 cut(s) 234, 390
BstAPI GCANNNNNTGC 1 cut(s) 2040
BstC8I GCNNGC 7 cut(s) 247, 894, 1062, 1066, 1107, 1573, 1962
BstDEI CTNAG 5 cut(s) 618, 1224, 1887, 1940, 2024
BstDSI CCRYGG 3 cut(s) 99, 358, 1582
BstF5I GGATG 6 cut(s) 51, 711, 868, 887, 1237, 1702
BstFNI CGCG 2 cut(s) 113, 656
BstKTI GATC 7 cut(s) 727, 954, 1036, 1543, 1857, 1895, 2132
BstMAI GTCTC 4 cut(s) 64, 155, 592, 1925
BstMBI GATC 7 cut(s) 724, 951, 1033, 1540, 1854, 1892, 2129
BstMCI CGRYCG 2 cut(s) 105, 117
BstNI CCWGG 1 cut(s) 1752
BstNSI RCATGY 5 cut(s) 565, 765, 965, 1109, 1171
BstSCI CCNGG 3 cut(s) 218, 384, 1750
BstSFI CTRYAG 2 cut(s) 1573, 1599
BstSLI GKGCMC 2 cut(s) 804, 1720
BstUI CGCG 2 cut(s) 113, 656
BstV1I GCAGC 6 cut(s) 1024, 1080, 1206, 1351, 1585, 2046
BstX2I RGATCY 3 cut(s) 724, 1892, 2129
BstYI RGATCY 3 cut(s) 724, 1892, 2129
BstZI CGGCCG 1 cut(s) 102
BsuRI GGCC 3 cut(s) 104, 1482, 1703
BtgI CCRYGG 3 cut(s) 99, 358, 1582
BtgZI GCGATG 2 cut(s) 76, 1283
BtsCI GGATG 6 cut(s) 51, 711, 868, 887, 1237, 1702
BtsI GCAGTG 1 cut(s) 2046
BtsIMutI CAGTG 2 cut(s) 1957, 2046
BtuMI TCGCGA 1 cut(s) 113
Cac8I GCNNGC 7 cut(s) 247, 894, 1062, 1066, 1107, 1573, 1962
CciI TCATGA 1 cut(s) 948
Cfr10I RCCGGY 2 cut(s) 1860, 1874
CseI GACGC 4 cut(s) 242, 398, 662, 1165
Csp6I GTAC 1 cut(s) 64
CviQI GTAC 1 cut(s) 64
DdeI CTNAG 5 cut(s) 618, 1224, 1887, 1940, 2024
DpnI GATC 7 cut(s) 726, 953, 1035, 1542, 1856, 1894, 2131
DpnII GATC 7 cut(s) 724, 951, 1033, 1540, 1854, 1892, 2129
DraI TTTAAA 1 cut(s) 840
DrdI GACNNNNNNGTC 1 cut(s) 56
DseDI GACNNNNNNGTC 1 cut(s) 56
EaeI YGGCCR 1 cut(s) 102
EagI CGGCCG 1 cut(s) 102
Eam1104I CTCTTC 4 cut(s) 230, 617, 1313, 1917
EarI CTCTTC 4 cut(s) 230, 617, 1313, 1917
Ecl136II GAGCTC 1 cut(s) 187
EclXI CGGCCG 1 cut(s) 102
Eco130I CCWWGG 2 cut(s) 1147, 1582
Eco24I GRGCYC 3 cut(s) 189, 225, 1980
Eco31I GGTCTC 1 cut(s) 592
Eco52I CGGCCG 1 cut(s) 102
Eco53kI GAGCTC 1 cut(s) 187
Eco57I CTGAAG 1 cut(s) 1443
Eco88I CYCGRG 1 cut(s) 280
EcoICRI GAGCTC 1 cut(s) 187
EcoRII CCWGG 1 cut(s) 1750
EcoT14I CCWWGG 2 cut(s) 1147, 1582
EcoT22I ATGCAT 1 cut(s) 1201
EcoT38I GRGCYC 3 cut(s) 189, 225, 1980
ErhI CCWWGG 2 cut(s) 1147, 1582
FalI AAGNNNNNCTT 2 cut(s) 1276, 1308
FaqI GGGAC 4 cut(s) 401, 1165, 2111, 2138
FauI CCCGC 4 cut(s) 464, 912, 1824, 2088
FbaI TGATCA 2 cut(s) 951, 1854
FblI GTMKAC 1 cut(s) 1389
FokI GGATG 6 cut(s) 38, 718, 875, 894, 1244, 1709
FriOI GRGCYC 3 cut(s) 189, 225, 1980
FspBI CTAG 3 cut(s) 161, 1443, 1625
GsuI CTGGAG 1 cut(s) 1734
HaeIII GGCC 3 cut(s) 104, 1482, 1703
HapII CCGG 6 cut(s) 219, 385, 1260, 1538, 1861, 1875
HgaI GACGC 4 cut(s) 242, 398, 662, 1165
Hin1I GRCGYC 2 cut(s) 234, 390
HincII GTYRAC 4 cut(s) 748, 1138, 1165, 1471
HindII GTYRAC 4 cut(s) 748, 1138, 1165, 1471
HindIII AAGCTT 1 cut(s) 684
HinfI GANTC 5 cut(s) 533, 1516, 1578, 1710, 1805
HpaI GTTAAC 1 cut(s) 748
HpaII CCGG 6 cut(s) 219, 385, 1260, 1538, 1861, 1875
HphI GGTGA 6 cut(s) 112, 232, 1051, 1060, 1339, 1805
Hpy166II GTNNAC 9 cut(s) 66, 748, 802, 1138, 1165, 1277, 1390, 1471, 2074
Hpy188III TCNNGA 8 cut(s) 112, 272, 754, 949, 1004, 1625, 1886, 2065
Hpy8I GTNNAC 9 cut(s) 66, 748, 802, 1138, 1165, 1277, 1390, 1471, 2074
Hpy99I CGWCG 4 cut(s) 113, 236, 260, 1159
HpyAV CCTTC 8 cut(s) 247, 269, 592, 1222, 1278, 1282, 1792, 1921
HpyCH4III ACNGT 5 cut(s) 118, 440, 824, 974, 1952
HpyCH4IV ACGT 2 cut(s) 750, 1140
HpyF3I CTNAG 5 cut(s) 618, 1224, 1887, 1940, 2024
HpySE526I ACGT 2 cut(s) 750, 1140
Hsp92I GRCGYC 2 cut(s) 234, 390
Ksp22I TGATCA 2 cut(s) 951, 1854
KspAI GTTAAC 1 cut(s) 748
Kzo9I GATC 7 cut(s) 724, 951, 1033, 1540, 1854, 1892, 2129
LguI GCTCTTC 1 cut(s) 230
LmnI GCTCC 6 cut(s) 13, 285, 831, 1185, 1297, 1753
Lsp1109I GCAGC 6 cut(s) 1024, 1080, 1206, 1351, 1585, 2046
LweI GCATC 5 cut(s) 906, 1186, 1302, 1327, 1515
MaeI CTAG 3 cut(s) 161, 1443, 1625
MaeII ACGT 2 cut(s) 750, 1140
MaeIII GTNAC 5 cut(s) 118, 344, 736, 974, 1039
MalI GATC 7 cut(s) 726, 953, 1035, 1542, 1856, 1894, 2131
MbiI CCGCTC 1 cut(s) 593
MboI GATC 7 cut(s) 724, 951, 1033, 1540, 1854, 1892, 2129
MfeI CAATTG 2 cut(s) 132, 1965
MflI RGATCY 3 cut(s) 724, 1892, 2129
MhlI GDGCHC 5 cut(s) 189, 225, 804, 1720, 1980
MluCI AATT 7 cut(s) 43, 132, 571, 901, 1128, 1790, 1965
MluI ACGCGT 1 cut(s) 654
MlyI GAGTC 1 cut(s) 1587
MmeI TCCRAC 3 cut(s) 72, 920, 1887
Mph1103I ATGCAT 1 cut(s) 1201
MroXI GAANNNNTTC 2 cut(s) 602, 932
MseI TTAA 4 cut(s) 747, 839, 1131, 1410
MslI CAYNNNNRTG 4 cut(s) 554, 1077, 1305, 1458
MspI CCGG 6 cut(s) 219, 385, 1260, 1538, 1861, 1875
MspR9I CCNGG 3 cut(s) 220, 386, 1752
MunI CAATTG 2 cut(s) 132, 1965
Mva1269I GAATGC 1 cut(s) 1434
MvaI CCWGG 1 cut(s) 1752
MvnI CGCG 2 cut(s) 113, 656
NciI CCSGG 2 cut(s) 220, 386
NcoI CCATGG 1 cut(s) 1582
NdeII GATC 7 cut(s) 724, 951, 1033, 1540, 1854, 1892, 2129
NlaIV GGNNCC 6 cut(s) 9, 287, 432, 726, 833, 1570
NmeAIII GCCGAG 1 cut(s) 1508
NmuCI GTSAC 2 cut(s) 118, 1039
NruI TCGCGA 1 cut(s) 113
NsiI ATGCAT 1 cut(s) 1201
NspI RCATGY 5 cut(s) 565, 765, 965, 1109, 1171
OliI CACNNNNGTG 1 cut(s) 1458
PaeI GCATGC 1 cut(s) 1109
PagI TCATGA 1 cut(s) 948
PciI ACATGT 3 cut(s) 561, 961, 1167
PciSI GCTCTTC 1 cut(s) 230
PctI GAATGC 1 cut(s) 1434
PdmI GAANNNNTTC 2 cut(s) 602, 932
PfeI GAWTC 4 cut(s) 533, 1516, 1710, 1805
PleI GAGTC 1 cut(s) 1586
PpsI GAGTC 1 cut(s) 1586
PscI ACATGT 3 cut(s) 561, 961, 1167
Psp124BI GAGCTC 1 cut(s) 189
Psp6I CCWGG 1 cut(s) 1750
PspGI CCWGG 1 cut(s) 1750
PspN4I GGNNCC 6 cut(s) 9, 287, 432, 726, 833, 1570
PstI CTGCAG 2 cut(s) 1577, 1603
PsuI RGATCY 3 cut(s) 724, 1892, 2129
RruI TCGCGA 1 cut(s) 113
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
RseI CAYNNNNRTG 4 cut(s) 554, 1077, 1305, 1458
SacI GAGCTC 1 cut(s) 189
SapI GCTCTTC 1 cut(s) 230
SaqAI TTAA 4 cut(s) 747, 839, 1131, 1410
Sau3AI GATC 7 cut(s) 724, 951, 1033, 1540, 1854, 1892, 2129
SchI GAGTC 1 cut(s) 1587
ScrFI CCNGG 3 cut(s) 220, 386, 1752
SduI GDGCHC 5 cut(s) 189, 225, 804, 1720, 1980
SfaNI GCATC 5 cut(s) 906, 1186, 1302, 1327, 1515
SfcI CTRYAG 2 cut(s) 1573, 1599
SmiMI CAYNNNNRTG 4 cut(s) 554, 1077, 1305, 1458
SmlI CTYRAG 2 cut(s) 188, 1592
SmoI CTYRAG 2 cut(s) 188, 1592
SphI GCATGC 1 cut(s) 1109
Sse9I AATT 7 cut(s) 43, 132, 571, 901, 1128, 1790, 1965
SspMI CTAG 3 cut(s) 161, 1443, 1625
SstI GAGCTC 1 cut(s) 189
StyD4I CCNGG 3 cut(s) 218, 384, 1750
StyI CCWWGG 2 cut(s) 1147, 1582
TaaI ACNGT 5 cut(s) 118, 440, 824, 974, 1952
TaiI ACGT 2 cut(s) 753, 1143
TaqI TCGA 5 cut(s) 231, 606, 898, 1615, 2066
TasI AATT 7 cut(s) 43, 132, 571, 901, 1128, 1790, 1965
TauI GCSGC 4 cut(s) 8, 98, 107, 1537
TfiI GAWTC 4 cut(s) 533, 1516, 1710, 1805
Tru1I TTAA 4 cut(s) 747, 839, 1131, 1410
Tru9I TTAA 4 cut(s) 747, 839, 1131, 1410
TscAI CASTG 2 cut(s) 1957, 2053
TseFI GTSAC 2 cut(s) 118, 1039
TseI GCWGC 6 cut(s) 1012, 1068, 1219, 1364, 1598, 2034
Tsp45I GTSAC 2 cut(s) 118, 1039
TspDTI ATGAA 8 cut(s) 525, 572, 999, 1700, 1797, 1803, 1851, 2102
TspGWI ACGGA 4 cut(s) 281, 347, 972, 2142
TspRI CASTG 2 cut(s) 1957, 2053
VneI GTGCAC 1 cut(s) 800
XapI RAATTY 2 cut(s) 901, 1790
XbaI TCTAGA 1 cut(s) 1624
XceI RCATGY 5 cut(s) 565, 765, 965, 1109, 1171
XmiI GTMKAC 1 cut(s) 1389
XmnI GAANNNNTTC 2 cut(s) 602, 932
XspI CTAG 3 cut(s) 161, 1443, 1625
Zsp2I ATGCAT 1 cut(s) 1201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.