Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005071

Physical Location & Seq

Genomic Coordinates Forward (+)

11000117 .. 11002327

Gene Structure 2211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g15800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2211 bp

ATGGTGTTTTCCTCATCATCGTTACCCATTCTACCCTGCAATTTTCATGTCCTCCCCGCCGCTGACCCACCGTACAAACTCCTCCAAACCCATCCATCTCTCACCCTTCTCTCCAAATGCAAAAGCATCCAAAATCTCAAACAAGTCCACACCCACATCATCAAAACCGGCCTCCACAACACCCACTTTGCCCTCAGCAAGCTCGTCGAGTTTTGCGCCGTTTCGCCCTTCGGGGATCTCTCTTACGCTCTCTCGGTATTCGAATCCATCGAGAACCCTAATCAGATTGTTTGGAACACGATCATTCGAGGTCATTCCTTGAGCTCTAGGCCCATAGAGGCCGTGGAATTCTATGTCCGGATGATCCTTTCGGGAGTGGAGCCGAATTCTTATACTTTCCCTTTTCTTTTGAAGTCTTGTGCAAAAACCGCGGCGACCCACGAAGGGAAACAGGTTCATGGACATGTTGTGAAGCTTGGACTGGAGTCTGATGCCTTTGTGCACACTTCTCTTATCAATATGTATGCACAAAATGGTGAATTGGATAGTGCACGTCTGGTGTTTGATAAAAGTCTTCTGAGAGATGCTGTTTCGTTTACGGCGTTGATCAGCGGTTATGTTTCGAGGGGTTGTATGGATGATGCTCGTGTTCTGTTCGATGAAATACCTGTGAGAGATGTGGTGTCTTGGAATGCCATGATTTCGGGTTATGCTCAAGGGGAGCGATTTGAAGAGGCATTGGCTTTGTTTGGGGAGATGCGGAAAGCAAATGTCTCTCCCAATGAGAGTACTATGGTTACGGTGCTTTCTGCTTGTGCTCAGTCAGGGTCTCTCGAATTGGGCAAATGGGTTGCATCTTGGATTGAGGATCATGGACTTGGTTCAAATCTTCGCCTCATCAGTGCACTTATTGATATGTACTCCAAGTGTGGTGCATTGGACATAGCTCGGGGTTTATTTGATGGTTTGCAGCAAAGGGATGTAATTTCGTGGAATTTAATGATTGGTGGTTATACACATAAGAGCCACTACAAAGAAGCCTTGATGCTGTTTCGGTTGATGCTACGATCAAATACAGAGCCTAATGATGTCACATTCTTAGGCATTCTTCCAGCTTGTGCTCATTTAGGAGCTCTTGATCTTGGCAAGTGGATTCATGCCTACATAGATAAGAACTTCCAGAAGTTTACCAATACTTGCCTCTGGACGAGCCTGATTGACATGTATGCAAAATGCGGAAACATCGAGGCAGCAAAACAGGTCTTTAATGGCATGGAAACCAAAAGCTTGGCTTCTTGGAATGCAATGATATCCGGCTTAGCAATGCACGGGGATGCGCATGCAGCCCTTGAGCTTTTCTCAAAAATGGAGGATGAAGGATTCAACGCAGATGCTATCACATTTGTGGGAGTTTTATCTGCTTGTAACCATGGTGGTCTTGTAGACCTGGGACGCCAATACTTCAGCTCCATGACGACGGATTACCATATTTCACCAGATCTGCATCACTATGGATGCATGATAGATATTCTAGGGCGAGCCGGGTTATTTGATGAAGCTGGGGCCCTAATGAAGAGCATGGAAATGAAGCCAGATGGTGCTGTGTGGGGTTCTCTGCTTGGAGCTTGTAGACTCCACAGGCGCGTGGAGCTGGGTGAATCCGTTGCCAAACATCTGTTCGAATTGGAGCCTGAAAATGCCGGGGCTTATGTTCTGCTATCAAATATCTATGCAGGAGCTGGCAGGTGGGATGATATGGCAAGAATAAGAACGAGGCTGAACGACTTGGGAATCAAGAAAGTTCCTGGCTCTACGTCTATTGAGGTCAATAGTGTTGTTCATGAGTTTCTCGTCAGTGACAAATCTCACCCATTAAGTAAAGAAATCTACGAGATGTTGGAAGAAATCGATAGGCTTTTGGATAAGGCGGGTTTTGTGCCGGATACATCGGAGGTGCTGTACGACATGGGTGAGGAGTGGAAGGAAGTGGCTTTGAGTCATCACAGTGAGAAATTAGCCATTGCTTTCGGTTTGATCAGCACGAAGCCAGGCACAACGATTCGAATAGTAAAGAATCTTCGTGTTTGCGGGAATTGCCATTCAGCAACAAAGCTGATATCCAAGATCTTTAATAGGGAGATTATTGCAAGAGATGGGAACCGTTTCCACCATTTTAGAGATGGTTCTTGTTCATGTAATGACAATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

737

Amino Acids

81.51

Weight (kDa)

6.13

Isoelectric Point (pI)

39.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	93 - 142	8.9e-09	PPR repeat family
PPR_2	PF13041	225 - 273	1.1e-13	PPR repeat family
PPR	PF01535	228 - 257	6.7e-09	PPR repeat
PPR_2	PF13041	326 - 375	8.2e-11	PPR repeat family
PPR_2	PF13041	431 - 475	7.2e-09	PPR repeat family
PPR	PF01535	432 - 461	2e-07	PPR repeat
E_motif	PF20431	546 - 608	1.3e-19	E motif
Eplus_motif	PF20430	613 - 636	1.4e-09	E+ motif
DYW_deaminase	PF14432	644 - 736	5.3e-39	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08070 AT1G08070
fragaria_vesca	FvH4_1g03710 FvH4_1g04070
malus_domestica	MD02G1039500.v1.1 MD15G1176200.v1.1 MD15G1180300.v1.1
prunus_persica	Prupe.7G236200_v2.0.a1 Prupe.7G239300_v2.0.a1
pyrus_communis	pycom02g03280 pycom15g15800 pycom15g16170 pycom15g16180
rosa_chinensis	RchiOBHm_Chr2g0089161 RchiOBHm_Chr2g0089561
rosa_laevigata	RLG00000015999 RLG00000016040
rosa_multiflora	Rmu_co8347093.1_g000001 Rmu_sc0006193.1_g000005 Rmu_sc0008909.1_g000002 Rmu_sc0023591.1_g000001
rosa_rugosa	Rorug01G0488000 Rorug02G0001500
rosa_samantha	Rh2AG043600 Rh2BG042300 Rh2CG043600 Rh2CG047500 Rh2DG042700
rosa_wichuraiana	Rw2G003400 Rw2G003590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1734
Acc16I	TGCGCA	1 cut(s)	1338
Acc36I	ACCTGC	1 cut(s)	1734
AccI	GTMKAC	2 cut(s)	1443, 1630
AccII	CGCG	2 cut(s)	431, 1644
AccIII	TCCGGA	1 cut(s)	357
AciI	CCGC	9 cut(s)	57, 60, 429, 431, 612, 760, 1236, 1928, 2088
AclWI	GGATC	3 cut(s)	243, 358, 876
AcsI	RAATTY	3 cut(s)	347, 385, 994
AcuI	CTGAAG	1 cut(s)	1447
AcyI	GRCGYC	1 cut(s)	1453
AfaI	GTAC	4 cut(s)	74, 790, 920, 1961
AfiI	CCNNNNNNNGG	1 cut(s)	444
AflIII	ACRYGT	2 cut(s)	463, 1221
AgsI	TTSAA	4 cut(s)	412, 731, 885, 1384
AjiI	CACGTC	1 cut(s)	554
AjnI	CCWGG	3 cut(s)	1446, 1804, 2047
AjuI	GAANNNNNNNTTGG	2 cut(s)	1661, 1693
AleI	CACNNNNGTG	1 cut(s)	1403
Alw21I	GWGCWC	7 cut(s)	326, 504, 553, 820, 907, 1123, 1135
Alw26I	GTCTC	2 cut(s)	778, 834
Alw44I	GTGCAC	3 cut(s)	500, 549, 903
AlwI	GGATC	3 cut(s)	243, 358, 876
AlwNI	CAGNNNCTG	1 cut(s)	1739
Ama87I	CYCGRG	1 cut(s)	948
Aor13HI	TCCGGA	1 cut(s)	357
AoxI	GGCC	4 cut(s)	169, 329, 339, 1563
ApaI	GGGCCC	1 cut(s)	1567
ApaLI	GTGCAC	3 cut(s)	500, 549, 903
ApeKI	GCWGC	3 cut(s)	970, 1250, 1343
ApoI	RAATTY	3 cut(s)	347, 385, 994
Asp700I	GAANNNNTTC	1 cut(s)	2162
AspLEI	GCGC	3 cut(s)	218, 1339, 1644
AspS9I	GGNCC	3 cut(s)	330, 1563, 1564
AsuC2I	CCSGG	2 cut(s)	1543, 1702
AsuHPI	GGTGA	6 cut(s)	94, 548, 1485, 1667, 1859, 1982
AsuII	TTCGAA	3 cut(s)	261, 1680, 2062
AvaI	CYCGRG	1 cut(s)	948
BaeGI	GKGCMC	4 cut(s)	504, 553, 907, 1567
BanII	GRGCYC	3 cut(s)	326, 1135, 1567
BarI	GAAGNNNNNNTAC	2 cut(s)	2061, 2093
BauI	CACGAG	1 cut(s)	645
BbsI	GAAGAC	1 cut(s)	566
Bbv12I	GWGCWC	7 cut(s)	326, 504, 553, 820, 907, 1123, 1135
BbvCI	CCTCAGC	1 cut(s)	194
BbvI	GCAGC	3 cut(s)	982, 1262, 1355
BccI	CCATC	7 cut(s)	99, 103, 275, 956, 1589, 2147, 2174
BceAI	ACGGC	3 cut(s)	203, 326, 615
BcgI	CGANNNNNNTGC	2 cut(s)	187, 221
BciT130I	CCWGG	3 cut(s)	1448, 1806, 2049
BciVI	GTATCC	1 cut(s)	1936
BclI	TGATCA	2 cut(s)	606, 2034
BcnI	CCSGG	2 cut(s)	1543, 1702
BcoDI	GTCTC	2 cut(s)	778, 834
BfaI	CTAG	2 cut(s)	327, 1532
BfuAI	ACCTGC	1 cut(s)	1734
BfuI	GTATCC	1 cut(s)	1936
BglII	AGATCT	2 cut(s)	1498, 2124
BisI	GCNGC	5 cut(s)	60, 432, 971, 1251, 1344
BlpI	GCTNAGC	1 cut(s)	1318
BlsI	GCNGC	5 cut(s)	61, 433, 972, 1252, 1345
BmcAI	AGTACT	1 cut(s)	790
Bme1390I	CCNGG	5 cut(s)	1448, 1543, 1702, 1806, 2049
BmeT110I	CYCGRG	1 cut(s)	948
BmgBI	CACGTC	1 cut(s)	554
BmgT120I	GGNCC	3 cut(s)	330, 1563, 1564
BmiI	GGNNCC	5 cut(s)	381, 1564, 1565, 1689, 2159
BmrFI	CCNGG	5 cut(s)	1448, 1543, 1702, 1806, 2049
BoxI	GACNNNNGTC	1 cut(s)	484
BpiI	GAAGAC	1 cut(s)	566
BplI	GAGNNNNNCTC	2 cut(s)	1343, 1375
BpmI	CTGGAG	1 cut(s)	503
Bpu10I	CCTNAGC	1 cut(s)	194
Bpu1102I	GCTNAGC	1 cut(s)	1318
Bpu14I	TTCGAA	3 cut(s)	261, 1680, 2062
BpuEI	CTTGAG	3 cut(s)	340, 699, 1370
BpuMI	CCSGG	2 cut(s)	1543, 1702
Bsa29I	ATCGAT	1 cut(s)	1908
BsaBI	GATNNNNATC	1 cut(s)	1503
BsaHI	GRCGYC	1 cut(s)	1453
BsaI	GGTCTC	1 cut(s)	834
BsaJI	CCNNGG	5 cut(s)	342, 429, 1429, 1447, 1701
BsaWI	WCCGGW	1 cut(s)	357
BsaXI	ACNNNNNCTCC	4 cut(s)	1451, 1481, 1943, 1973
Bsc4I	CCNNNNNNNGG	1 cut(s)	444
Bse118I	RCCGGY	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	486
Bse3DI	GCAATG	3 cut(s)	1311, 1329, 2019
Bse8I	GATNNNNATC	1 cut(s)	1503
BseAI	TCCGGA	1 cut(s)	357
BseBI	CCWGG	3 cut(s)	1448, 1806, 2049
BseCI	ATCGAT	1 cut(s)	1908
BseDI	CCNNGG	5 cut(s)	342, 429, 1429, 1447, 1701
BseGI	GGATG	9 cut(s)	91, 126, 366, 643, 985, 1339, 1378, 1520, 1756
BseJI	GATNNNNATC	1 cut(s)	1503
BseLI	CCNNNNNNNGG	1 cut(s)	444
BseMI	GCAATG	3 cut(s)	1311, 1329, 2019
BseMII	CTCAG	3 cut(s)	208, 569, 833
BseNI	ACTGG	1 cut(s)	486
BseRI	GAGGAG	2 cut(s)	71, 1988
BseSI	GKGCMC	4 cut(s)	504, 553, 907, 1567
BseXI	GCAGC	3 cut(s)	982, 1262, 1355
BseYI	CCCAGC	2 cut(s)	1559, 1651
Bsh1236I	CGCG	2 cut(s)	431, 1644
BshFI	GGCC	4 cut(s)	171, 331, 341, 1565
BshVI	ATCGAT	1 cut(s)	1908
BsiHKAI	GWGCWC	7 cut(s)	326, 504, 553, 820, 907, 1123, 1135
BsiHKCI	CYCGRG	1 cut(s)	948
BsiSI	CCGG	6 cut(s)	168, 358, 1314, 1542, 1701, 1940
BslFI	GGGAC	1 cut(s)	1464
BslI	CCNNNNNNNGG	1 cut(s)	444
BsmAI	GTCTC	2 cut(s)	778, 834
BsmFI	GGGAC	1 cut(s)	1464
BsmI	GAATGC	3 cut(s)	697, 1104, 1306
BsnI	GGCC	4 cut(s)	171, 331, 341, 1565
Bso31I	GGTCTC	1 cut(s)	834
BsoBI	CYCGRG	1 cut(s)	948
Bsp119I	TTCGAA	3 cut(s)	261, 1680, 2062
Bsp120I	GGGCCC	1 cut(s)	1563
Bsp1286I	GDGCHC	8 cut(s)	326, 504, 553, 820, 907, 1123, 1135, 1567
Bsp13I	TCCGGA	1 cut(s)	357
Bsp1720I	GCTNAGC	1 cut(s)	1318
Bsp19I	CCATGG	1 cut(s)	1429
BspACI	CCGC	9 cut(s)	57, 60, 429, 431, 612, 760, 1236, 1928, 2088
BspANI	GGCC	4 cut(s)	171, 331, 341, 1565
BspCNI	CTCAG	3 cut(s)	207, 570, 832
BspDI	ATCGAT	1 cut(s)	1908
BspEI	TCCGGA	1 cut(s)	357
BspFNI	CGCG	2 cut(s)	431, 1644
BspHI	TCATGA	1 cut(s)	1840
BspLI	GGNNCC	5 cut(s)	381, 1564, 1565, 1689, 2159
BspMI	ACCTGC	1 cut(s)	1734
BspPI	GGATC	3 cut(s)	243, 358, 876
BspQI	GCTCTTC	1 cut(s)	1568
BspT104I	TTCGAA	3 cut(s)	261, 1680, 2062
BspTNI	GGTCTC	1 cut(s)	834
BsrDI	GCAATG	3 cut(s)	1311, 1329, 2019
BsrFI	RCCGGY	1 cut(s)	167
BsrI	ACTGG	1 cut(s)	486
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	5 cut(s)	342, 429, 1429, 1447, 1701
BssNI	GRCGYC	1 cut(s)	1453
BssSI	CACGAG	1 cut(s)	645
BssT1I	CCWWGG	1 cut(s)	1429
Bst2BI	CACGAG	1 cut(s)	645
Bst2UI	CCWGG	3 cut(s)	1448, 1806, 2049
Bst4CI	ACNGT	4 cut(s)	72, 802, 2006, 2162
Bst6I	CTCTTC	2 cut(s)	726, 1568
BstACI	GRCGYC	1 cut(s)	1453
BstBI	TTCGAA	3 cut(s)	261, 1680, 2062
BstC8I	GCNNGC	4 cut(s)	200, 1341, 1539, 1741
BstDEI	CTNAG	5 cut(s)	194, 578, 819, 1099, 1318
BstDSI	CCRYGG	3 cut(s)	342, 429, 1429
BstF5I	GGATG	9 cut(s)	91, 126, 366, 643, 985, 1339, 1378, 1520, 1756
BstFNI	CGCG	2 cut(s)	431, 1644
BstHHI	GCGC	3 cut(s)	218, 1339, 1644
BstMAI	GTCTC	2 cut(s)	778, 834
BstMWI	GCNNNNNNNGC	4 cut(s)	428, 1343, 1648, 2094
BstNI	CCWGG	3 cut(s)	1448, 1806, 2049
BstNSI	RCATGY	3 cut(s)	467, 1225, 1343
BstPAI	GACNNNNGTC	1 cut(s)	484
BstSCI	CCNGG	5 cut(s)	1446, 1541, 1700, 1804, 2047
BstSLI	GKGCMC	4 cut(s)	504, 553, 907, 1567
BstUI	CGCG	2 cut(s)	431, 1644
BstV1I	GCAGC	3 cut(s)	982, 1262, 1355
BstV2I	GAAGAC	1 cut(s)	566
BstX2I	RGATCY	3 cut(s)	235, 1498, 2124
BstXI	CCANNNNNNTGG	1 cut(s)	1288
BstYI	RGATCY	3 cut(s)	235, 1498, 2124
Bsu15I	ATCGAT	1 cut(s)	1908
BsuI	GTATCC	1 cut(s)	1936
BsuRI	GGCC	4 cut(s)	171, 331, 341, 1565
BsuTUI	ATCGAT	1 cut(s)	1908
BtgI	CCRYGG	3 cut(s)	342, 429, 1429
BtrI	CACGTC	1 cut(s)	554
BtsCI	GGATG	9 cut(s)	91, 126, 366, 643, 985, 1339, 1378, 1520, 1756
BtsIMutI	CAGTG	3 cut(s)	907, 1861, 2011
BveI	ACCTGC	1 cut(s)	1734
Cac8I	GCNNGC	4 cut(s)	200, 1341, 1539, 1741
CaiI	CAGNNNCTG	1 cut(s)	1739
CciI	TCATGA	1 cut(s)	1840
CfoI	GCGC	3 cut(s)	218, 1339, 1644
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	3 cut(s)	330, 1563, 1564
Cfr42I	CCGCGG	1 cut(s)	432
ClaI	ATCGAT	1 cut(s)	1908
CseI	GACGC	1 cut(s)	1461
Csp6I	GTAC	4 cut(s)	73, 789, 919, 1960
CviQI	GTAC	4 cut(s)	73, 789, 919, 1960
DdeI	CTNAG	5 cut(s)	194, 578, 819, 1099, 1318
Eam1104I	CTCTTC	2 cut(s)	726, 1568
EarI	CTCTTC	2 cut(s)	726, 1568
Ecl136II	GAGCTC	2 cut(s)	324, 1133
Eco130I	CCWWGG	1 cut(s)	1429
Eco24I	GRGCYC	3 cut(s)	326, 1135, 1567
Eco31I	GGTCTC	1 cut(s)	834
Eco32I	GATATC	2 cut(s)	1311, 2118
Eco53kI	GAGCTC	2 cut(s)	324, 1133
Eco57I	CTGAAG	1 cut(s)	1447
Eco88I	CYCGRG	1 cut(s)	948
EcoICRI	GAGCTC	2 cut(s)	324, 1133
EcoO109I	RGGNCCY	2 cut(s)	1563, 1564
EcoRI	GAATTC	2 cut(s)	347, 385
EcoRII	CCWGG	3 cut(s)	1446, 1804, 2047
EcoRV	GATATC	2 cut(s)	1311, 2118
EcoT14I	CCWWGG	1 cut(s)	1429
EcoT22I	ATGCAT	1 cut(s)	1520
EcoT38I	GRGCYC	3 cut(s)	326, 1135, 1567
ErhI	CCWWGG	1 cut(s)	1429
FalI	AAGNNNNNCTT	2 cut(s)	1276, 1308
FaqI	GGGAC	1 cut(s)	1464
FauI	CCCGC	3 cut(s)	64, 1921, 2081
FbaI	TGATCA	2 cut(s)	606, 2034
FblI	GTMKAC	2 cut(s)	1443, 1630
Fnu4HI	GCNGC	5 cut(s)	60, 432, 971, 1251, 1344
FokI	GGATG	9 cut(s)	78, 113, 373, 650, 992, 1346, 1385, 1527, 1763
FriOI	GRGCYC	3 cut(s)	326, 1135, 1567
Fsp4HI	GCNGC	5 cut(s)	60, 432, 971, 1251, 1344
FspAI	RTGCGCAY	1 cut(s)	1338
FspBI	CTAG	2 cut(s)	327, 1532
FspI	TGCGCA	1 cut(s)	1338
GlaI	GCGC	3 cut(s)	217, 1338, 1643
GluI	GCNGC	5 cut(s)	60, 432, 971, 1251, 1344
GsaI	CCCAGC	2 cut(s)	1563, 1655
GsuI	CTGGAG	1 cut(s)	503
HaeIII	GGCC	4 cut(s)	171, 331, 341, 1565
HapII	CCGG	6 cut(s)	168, 358, 1314, 1542, 1701, 1940
HgaI	GACGC	1 cut(s)	1461
HhaI	GCGC	3 cut(s)	218, 1339, 1644
Hin1I	GRCGYC	1 cut(s)	1453
Hin6I	GCGC	3 cut(s)	216, 1337, 1642
HinP1I	GCGC	3 cut(s)	216, 1337, 1642
HindIII	AAGCTT	2 cut(s)	473, 1285
HpaII	CCGG	6 cut(s)	168, 358, 1314, 1542, 1701, 1940
HphI	GGTGA	6 cut(s)	94, 548, 1485, 1667, 1859, 1982
Hpy166II	GTNNAC	8 cut(s)	148, 502, 551, 597, 905, 1188, 1444, 1631
Hpy188I	TCNGA	4 cut(s)	285, 490, 579, 1951
Hpy188III	TCNNGA	9 cut(s)	271, 358, 372, 833, 1136, 1180, 1204, 1795, 1841
Hpy8I	GTNNAC	8 cut(s)	148, 502, 551, 597, 905, 1188, 1444, 1631
Hpy99I	CGWCG	2 cut(s)	209, 1480
HpyAV	CCTTC	5 cut(s)	116, 238, 437, 1370, 1975
HpyCH4III	ACNGT	4 cut(s)	72, 802, 2006, 2162
HpyCH4IV	ACGT	2 cut(s)	553, 1814
HpyF10VI	GCNNNNNNNGC	4 cut(s)	428, 1343, 1648, 2094
HpyF3I	CTNAG	5 cut(s)	194, 578, 819, 1099, 1318
HpySE526I	ACGT	2 cut(s)	553, 1814
Hsp92I	GRCGYC	1 cut(s)	1453
HspAI	GCGC	3 cut(s)	216, 1337, 1642
Kpn2I	TCCGGA	1 cut(s)	357
Ksp22I	TGATCA	2 cut(s)	606, 2034
KspI	CCGCGG	1 cut(s)	432
LguI	GCTCTTC	1 cut(s)	1568
LmnI	GCTCC	8 cut(s)	379, 721, 1130, 1472, 1622, 1648, 1687, 1736
Lsp1109I	GCAGC	3 cut(s)	982, 1262, 1355
MaeI	CTAG	2 cut(s)	327, 1532
MaeII	ACGT	2 cut(s)	553, 1814
MaeIII	GTNAC	5 cut(s)	21, 796, 1090, 1424, 1856
MboII	GAAGA	7 cut(s)	566, 743, 881, 1100, 1585, 1913, 2069
MfeI	CAATTG	1 cut(s)	2203
MflI	RGATCY	3 cut(s)	235, 1498, 2124
MhlI	GDGCHC	8 cut(s)	326, 504, 553, 820, 907, 1123, 1135, 1567
MlyI	GAGTC	3 cut(s)	494, 1626, 2005
MmeI	TCCRAC	1 cut(s)	1878
Mph1103I	ATGCAT	1 cut(s)	1520
MroI	TCCGGA	1 cut(s)	357
MroXI	GAANNNNTTC	1 cut(s)	2162
MseI	TTAA	4 cut(s)	998, 1266, 1874, 2130
MslI	CAYNNNNRTG	6 cut(s)	462, 1332, 1403, 1509, 1583, 2004
MspA1I	CMGCKG	3 cut(s)	62, 431, 612
MspI	CCGG	6 cut(s)	168, 358, 1314, 1542, 1701, 1940
MspR9I	CCNGG	5 cut(s)	1448, 1543, 1702, 1806, 2049
MunI	CAATTG	1 cut(s)	2203
Mva1269I	GAATGC	3 cut(s)	697, 1104, 1306
MvaI	CCWGG	3 cut(s)	1448, 1806, 2049
MvnI	CGCG	2 cut(s)	431, 1644
MwoI	GCNNNNNNNGC	4 cut(s)	428, 1343, 1648, 2094
NciI	CCSGG	2 cut(s)	1543, 1702
NcoI	CCATGG	1 cut(s)	1429
NlaIV	GGNNCC	5 cut(s)	381, 1564, 1565, 1689, 2159
NmuCI	GTSAC	2 cut(s)	1090, 1856
NsbI	TGCGCA	1 cut(s)	1338
NsiI	ATGCAT	1 cut(s)	1520
NspI	RCATGY	3 cut(s)	467, 1225, 1343
NspV	TTCGAA	3 cut(s)	261, 1680, 2062
OliI	CACNNNNGTG	1 cut(s)	1403
PaeI	GCATGC	1 cut(s)	1343
PagI	TCATGA	1 cut(s)	1840
PaqCI	CACCTGC	1 cut(s)	1734
PciI	ACATGT	2 cut(s)	463, 1221
PciSI	GCTCTTC	1 cut(s)	1568
PcsI	WCGNNNNNNNCGW	2 cut(s)	267, 599
PctI	GAATGC	3 cut(s)	697, 1104, 1306
PdmI	GAANNNNTTC	1 cut(s)	2162
PfeI	GAWTC	7 cut(s)	263, 1153, 1380, 1658, 1791, 2059, 2074
PkrI	GCNGC	5 cut(s)	61, 433, 972, 1252, 1345
PleI	GAGTC	3 cut(s)	493, 1626, 2004
PpsI	GAGTC	3 cut(s)	493, 1626, 2004
PscI	ACATGT	2 cut(s)	463, 1221
PshAI	GACNNNNGTC	1 cut(s)	484
Psp124BI	GAGCTC	2 cut(s)	326, 1135
Psp6I	CCWGG	3 cut(s)	1446, 1804, 2047
PspFI	CCCAGC	2 cut(s)	1559, 1651
PspGI	CCWGG	3 cut(s)	1446, 1804, 2047
PspN4I	GGNNCC	5 cut(s)	381, 1564, 1565, 1689, 2159
PspOMI	GGGCCC	1 cut(s)	1563
PspPI	GGNCC	3 cut(s)	330, 1563, 1564
PstNI	CAGNNNCTG	1 cut(s)	1739
PsuI	RGATCY	3 cut(s)	235, 1498, 2124
RsaI	GTAC	4 cut(s)	74, 790, 920, 1961
RsaNI	GTAC	4 cut(s)	73, 789, 919, 1960
RseI	CAYNNNNRTG	6 cut(s)	462, 1332, 1403, 1509, 1583, 2004
SacI	GAGCTC	2 cut(s)	326, 1135
SacII	CCGCGG	1 cut(s)	432
SapI	GCTCTTC	1 cut(s)	1568
SaqAI	TTAA	4 cut(s)	998, 1266, 1874, 2130
SatI	GCNGC	5 cut(s)	60, 432, 971, 1251, 1344
Sau96I	GGNCC	3 cut(s)	330, 1563, 1564
ScaI	AGTACT	1 cut(s)	790
SchI	GAGTC	3 cut(s)	494, 1626, 2005
ScrFI	CCNGG	5 cut(s)	1448, 1543, 1702, 1806, 2049
SduI	GDGCHC	8 cut(s)	326, 504, 553, 820, 907, 1123, 1135, 1567
Sfr303I	CCGCGG	1 cut(s)	432
SfuI	TTCGAA	3 cut(s)	261, 1680, 2062
SgrBI	CCGCGG	1 cut(s)	432
SmiMI	CAYNNNNRTG	6 cut(s)	462, 1332, 1403, 1509, 1583, 2004
SmlI	CTYRAG	3 cut(s)	319, 714, 1349
SmoI	CTYRAG	3 cut(s)	319, 714, 1349
SphI	GCATGC	1 cut(s)	1343
SsiI	CCGC	9 cut(s)	57, 60, 429, 431, 612, 760, 1236, 1928, 2088
SspMI	CTAG	2 cut(s)	327, 1532
SstI	GAGCTC	2 cut(s)	326, 1135
StyD4I	CCNGG	5 cut(s)	1446, 1541, 1700, 1804, 2047
StyI	CCWWGG	1 cut(s)	1429
TaaI	ACNGT	4 cut(s)	72, 802, 2006, 2162
TaiI	ACGT	2 cut(s)	556, 1817
TatI	WGTACW	2 cut(s)	788, 918
TauI	GCSGC	2 cut(s)	62, 434
TfiI	GAWTC	7 cut(s)	263, 1153, 1380, 1658, 1791, 2059, 2074
Tru1I	TTAA	4 cut(s)	998, 1266, 1874, 2130
Tru9I	TTAA	4 cut(s)	998, 1266, 1874, 2130
TscAI	CASTG	3 cut(s)	907, 1861, 2011
TseFI	GTSAC	2 cut(s)	1090, 1856
TseI	GCWGC	3 cut(s)	970, 1250, 1343
Tsp45I	GTSAC	2 cut(s)	1090, 1856
TspGWI	ACGGA	2 cut(s)	1493, 1651
TspRI	CASTG	3 cut(s)	907, 1861, 2011
VneI	GTGCAC	3 cut(s)	500, 549, 903
XapI	RAATTY	3 cut(s)	347, 385, 994
XceI	RCATGY	3 cut(s)	467, 1225, 1343
XcmI	CCANNNNNNNNNTGG	2 cut(s)	340, 2177
XmiI	GTMKAC	2 cut(s)	1443, 1630
XmnI	GAANNNNTTC	1 cut(s)	2162
XspI	CTAG	2 cut(s)	327, 1532
ZrmI	AGTACT	1 cut(s)	790
Zsp2I	ATGCAT	1 cut(s)	1520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.