Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005071

Physical Location & Seq

Genomic Coordinates Reverse (-)

14184927 .. 14185700

Gene Structure 774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1180300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGAACATGAATGCGAACTGCGGGTGTTTTGTCTCCGCTCAGAAGGTGTTCGACAAAATGACTGAGAAGAGTGTGGATTCTTGGGCAACCATGATTGATGCGTATGCTAAATGGGATCGACCAGTTGAAGCTTTGAAATTGTTTGGTAGGATGGAACGTGAAAATGTGGATCTTAATGAGGTCACTTTGGTTAATGTTTTGACTGCGTGTGCGAGGGCGAGGGATTTAGACATGGCGAAAAGGGTGCACCGGTACATTGATTATTGGAACATCATGATCAATGGACATGTTGAGGATAGTAACTACTATGAAGCGTTTGTACTCTTTCATAAAATGCAGCTCAAAGGAGAAAAAGAGGATGAGGTAACGATGGTAAGTTTATTGCTTGCTTGCAGCCATTTTGGTGCTCTAGAGCTTGGTAAGTGGTTGCATGCCTATATGGAAAAGGAGAACATTAAGGTGGACGTTGCCTTCGGGACGACTTTTGTTGACATGTATGCACAATGTGGAAGCATAGACAATGCATGGGAAATTTTCCGAAAGCTACCCAAGAAGGATGTTATGACTTGGACAGCGTTGATTTCGGTTCTGCGGTGTGTGGACAAGGGAAGAAGGCTTTGGAGCATTTCCATGAGGTGCAGAAGAGCGGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

218

Amino Acids

25.15

Weight (kDa)

7.58

Isoelectric Point (pI)

30.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	24 - 72	1.3e-07	PPR repeat family
PPR	PF01535	27 - 56	3.9e-07	PPR repeat
PPR_2	PF13041	89 - 132	9.2e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08070 AT1G08070
fragaria_vesca	FvH4_1g03710 FvH4_1g04070
malus_domestica	MD02G1039500.v1.1 MD15G1176200.v1.1 MD15G1180300.v1.1
prunus_persica	Prupe.7G236200_v2.0.a1 Prupe.7G239300_v2.0.a1
pyrus_communis	pycom02g03280 pycom15g15800 pycom15g16170 pycom15g16180
rosa_chinensis	RchiOBHm_Chr2g0089161 RchiOBHm_Chr2g0089561
rosa_laevigata	RLG00000015999 RLG00000016040
rosa_multiflora	Rmu_co8347093.1_g000001 Rmu_sc0006193.1_g000005 Rmu_sc0008909.1_g000002 Rmu_sc0023591.1_g000001
rosa_rugosa	Rorug01G0488000 Rorug02G0001500
rosa_samantha	Rh2AG043600 Rh2BG042300 Rh2CG043600 Rh2CG047500 Rh2DG042700
rosa_wichuraiana	Rw2G003400 Rw2G003590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	38, 647
AciI	CCGC	4 cut(s)	21, 36, 592, 647
AclWI	GGATC	2 cut(s)	123, 177
AcsI	RAATTY	1 cut(s)	531
AdeI	CACNNNGTG	1 cut(s)	506
AfaI	GTAC	2 cut(s)	254, 321
AflIII	ACRYGT	2 cut(s)	286, 492
AgeI	ACCGGT	1 cut(s)	249
AgsI	TTSAA	2 cut(s)	128, 136
AjuI	GAANNNNNNNTTGG	2 cut(s)	601, 633
AluBI	AGCT	4 cut(s)	131, 340, 415, 544
AluI	AGCT	4 cut(s)	131, 340, 415, 544
Alw21I	GWGCWC	2 cut(s)	249, 409
Alw26I	GTCTC	1 cut(s)	37
Alw44I	GTGCAC	1 cut(s)	245
AlwI	GGATC	2 cut(s)	123, 177
ApaLI	GTGCAC	1 cut(s)	245
ApeKI	GCWGC	2 cut(s)	337, 393
ApoI	RAATTY	1 cut(s)	531
ArsI	GACNNNNNNTTYG	2 cut(s)	455, 487
AsiGI	ACCGGT	1 cut(s)	249
Asp700I	GAANNNNTTC	1 cut(s)	47
BaeGI	GKGCMC	1 cut(s)	249
BarI	GAAGNNNNNNTAC	2 cut(s)	303, 335
Bbv12I	GWGCWC	2 cut(s)	249, 409
BbvI	GCAGC	2 cut(s)	349, 405
BccI	CCATC	2 cut(s)	145, 364
BcgI	CGANNNNNNTGC	2 cut(s)	226, 260
BclI	TGATCA	1 cut(s)	276
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	1 cut(s)	410
BisI	GCNGC	2 cut(s)	338, 394
BlsI	GCNGC	2 cut(s)	339, 395
BmsI	GCATC	1 cut(s)	88
BsaWI	WCCGGW	1 cut(s)	249
Bse118I	RCCGGY	1 cut(s)	249
Bse1I	ACTGG	1 cut(s)	122
BseGI	GGATG	3 cut(s)	156, 364, 562
BseMII	CTCAG	2 cut(s)	53, 54
BseNI	ACTGG	1 cut(s)	122
BseSI	GKGCMC	1 cut(s)	249
BseXI	GCAGC	2 cut(s)	349, 405
BshTI	ACCGGT	1 cut(s)	249
BsiHKAI	GWGCWC	2 cut(s)	249, 409
BsiSI	CCGG	1 cut(s)	250
BslFI	GGGAC	1 cut(s)	490
BsmAI	GTCTC	1 cut(s)	37
BsmFI	GGGAC	1 cut(s)	490
BsmI	GAATGC	1 cut(s)	16
Bsp1286I	GDGCHC	2 cut(s)	249, 409
Bsp143I	GATC	3 cut(s)	115, 169, 276
BspACI	CCGC	4 cut(s)	21, 36, 592, 647
BspCNI	CTCAG	2 cut(s)	52, 55
BspHI	TCATGA	1 cut(s)	273
BspPI	GGATC	2 cut(s)	123, 177
BspQI	GCTCTTC	1 cut(s)	637
BsrBI	CCGCTC	2 cut(s)	38, 647
BsrFI	RCCGGY	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	122
BssAI	RCCGGY	1 cut(s)	249
BssMI	GATC	3 cut(s)	115, 169, 276
Bst6I	CTCTTC	2 cut(s)	62, 637
BstC8I	GCNNGC	3 cut(s)	387, 391, 432
BstDEI	CTNAG	2 cut(s)	39, 63
BstF5I	GGATG	3 cut(s)	156, 364, 562
BstKTI	GATC	3 cut(s)	118, 172, 279
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	3 cut(s)	115, 169, 276
BstNSI	RCATGY	3 cut(s)	290, 434, 496
BstSLI	GKGCMC	1 cut(s)	249
BstV1I	GCAGC	2 cut(s)	349, 405
BstX2I	RGATCY	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	169
BtsCI	GGATG	3 cut(s)	156, 364, 562
Cac8I	GCNNGC	3 cut(s)	387, 391, 432
CciI	TCATGA	1 cut(s)	273
Cfr10I	RCCGGY	1 cut(s)	249
Csp6I	GTAC	2 cut(s)	253, 320
CspAI	ACCGGT	1 cut(s)	249
CviAII	CATG	9 cut(s)	7, 91, 232, 274, 287, 431, 493, 525, 631
CviJI	RGCY	6 cut(s)	131, 340, 396, 415, 544, 616
CviKI_1	RGCY	6 cut(s)	131, 340, 396, 415, 544, 616
CviQI	GTAC	2 cut(s)	253, 320
DdeI	CTNAG	2 cut(s)	39, 63
DpnI	GATC	3 cut(s)	117, 171, 278
DpnII	GATC	3 cut(s)	115, 169, 276
DraIII	CACNNNGTG	1 cut(s)	506
Eam1104I	CTCTTC	2 cut(s)	62, 637
EarI	CTCTTC	2 cut(s)	62, 637
EcoT22I	ATGCAT	1 cut(s)	526
FaeI	CATG	9 cut(s)	10, 94, 235, 277, 290, 434, 496, 528, 634
FaqI	GGGAC	1 cut(s)	490
FatI	CATG	9 cut(s)	6, 90, 231, 273, 286, 430, 492, 524, 630
FauI	CCCGC	2 cut(s)	14, 640
FbaI	TGATCA	1 cut(s)	276
Fnu4HI	GCNGC	2 cut(s)	338, 394
FokI	GGATG	3 cut(s)	163, 371, 569
Fsp4HI	GCNGC	2 cut(s)	338, 394
FspBI	CTAG	1 cut(s)	410
GluI	GCNGC	2 cut(s)	338, 394
HapII	CCGG	1 cut(s)	250
Hin1II	CATG	9 cut(s)	10, 94, 235, 277, 290, 434, 496, 528, 634
HincII	GTYRAC	1 cut(s)	490
HindII	GTYRAC	1 cut(s)	490
HindIII	AAGCTT	1 cut(s)	129
HinfI	GANTC	1 cut(s)	77
HpaII	CCGG	1 cut(s)	250
Hpy166II	GTNNAC	4 cut(s)	247, 463, 490, 601
Hpy188I	TCNGA	2 cut(s)	42, 539
Hpy188III	TCNNGA	3 cut(s)	274, 410, 475
Hpy8I	GTNNAC	4 cut(s)	247, 463, 490, 601
HpyAV	CCTTC	4 cut(s)	37, 481, 547, 606
HpyCH4IV	ACGT	2 cut(s)	157, 465
HpyCH4V	TGCA	7 cut(s)	247, 337, 393, 430, 500, 524, 639
HpyF3I	CTNAG	2 cut(s)	39, 63
HpySE526I	ACGT	2 cut(s)	157, 465
Hsp92II	CATG	9 cut(s)	10, 94, 235, 277, 290, 434, 496, 528, 634
Ksp22I	TGATCA	1 cut(s)	276
Kzo9I	GATC	3 cut(s)	115, 169, 276
LguI	GCTCTTC	1 cut(s)	637
LmnI	GCTCC	1 cut(s)	621
LpnPI	CCDG	2 cut(s)	135, 263
Lsp1109I	GCAGC	2 cut(s)	349, 405
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	1 cut(s)	410
MaeII	ACGT	2 cut(s)	157, 465
MaeIII	GTNAC	3 cut(s)	181, 299, 364
MalI	GATC	3 cut(s)	117, 171, 278
MbiI	CCGCTC	2 cut(s)	38, 647
MboI	GATC	3 cut(s)	115, 169, 276
MboII	GAAGA	3 cut(s)	79, 621, 654
MflI	RGATCY	1 cut(s)	169
MhlI	GDGCHC	2 cut(s)	249, 409
MluCI	AATT	2 cut(s)	137, 531
MnlI	CCTC	7 cut(s)	172, 207, 213, 286, 349, 355, 627
Mph1103I	ATGCAT	1 cut(s)	526
MroXI	GAANNNNTTC	1 cut(s)	47
MseI	TTAA	3 cut(s)	174, 192, 456
MslI	CAYNNNNRTG	3 cut(s)	402, 458, 629
MspI	CCGG	1 cut(s)	250
Mva1269I	GAATGC	1 cut(s)	16
NdeII	GATC	3 cut(s)	115, 169, 276
NlaIII	CATG	9 cut(s)	10, 94, 235, 277, 290, 434, 496, 528, 634
NmuCI	GTSAC	1 cut(s)	181
NsiI	ATGCAT	1 cut(s)	526
NspI	RCATGY	3 cut(s)	290, 434, 496
PaeI	GCATGC	1 cut(s)	434
PagI	TCATGA	1 cut(s)	273
PciI	ACATGT	2 cut(s)	286, 492
PciSI	GCTCTTC	1 cut(s)	637
PctI	GAATGC	1 cut(s)	16
PdmI	GAANNNNTTC	1 cut(s)	47
PfeI	GAWTC	1 cut(s)	77
PinAI	ACCGGT	1 cut(s)	249
PkrI	GCNGC	2 cut(s)	339, 395
PscI	ACATGT	2 cut(s)	286, 492
PsuI	RGATCY	1 cut(s)	169
RsaI	GTAC	2 cut(s)	254, 321
RsaNI	GTAC	2 cut(s)	253, 320
RseI	CAYNNNNRTG	3 cut(s)	402, 458, 629
SapI	GCTCTTC	1 cut(s)	637
SaqAI	TTAA	3 cut(s)	174, 192, 456
SatI	GCNGC	2 cut(s)	338, 394
Sau3AI	GATC	3 cut(s)	115, 169, 276
SduI	GDGCHC	2 cut(s)	249, 409
SfaNI	GCATC	1 cut(s)	88
SmiMI	CAYNNNNRTG	3 cut(s)	402, 458, 629
SphI	GCATGC	1 cut(s)	434
Sse9I	AATT	2 cut(s)	137, 531
SsiI	CCGC	4 cut(s)	21, 36, 592, 647
SspMI	CTAG	1 cut(s)	410
TaiI	ACGT	2 cut(s)	160, 468
TaqI	TCGA	2 cut(s)	51, 118
TasI	AATT	2 cut(s)	137, 531
TatI	WGTACW	1 cut(s)	319
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	3 cut(s)	174, 192, 456
Tru9I	TTAA	3 cut(s)	174, 192, 456
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	2 cut(s)	337, 393
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	4 cut(s)	17, 23, 317, 324
VneI	GTGCAC	1 cut(s)	245
XapI	RAATTY	1 cut(s)	531
XbaI	TCTAGA	1 cut(s)	409
XceI	RCATGY	3 cut(s)	290, 434, 496
XmnI	GAANNNNTTC	1 cut(s)	47
XspI	CTAG	1 cut(s)	410
Zsp2I	ATGCAT	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.