Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005071

Physical Location & Seq

Genomic Coordinates Forward (+)

2924524 .. 2926808

Gene Structure 2285 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG042300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGTGTTTTCGTTTTCATCTTCGTCTTCGTTGCTGACCACTCCACCCTCCACCCTTCACGTCCTCCCCGCCTCCGATCCTCCGTACAACCTCCTCCAAACCCACCCATCTCTCATTCTCCTCTCCAAATGCAAAAGCATCCAAAATCTCAAACAAGTCCACACCCACATCATCAAGACCGGCCTCCACAACACCCACTTTGCTATGAGCAAGCTCATCGAGTTTTGCGCCGTTTCGCAATTTGGGGACCTCTCCTATGCCCTGTCGGTCTTCGAATGCGTTGAGAATCCGAACCAGATTATTTGGAACACAATTATTCGAGGCTATTCCTTGAACTCGAAGCCATTACAGGCCGTGGAGTTCTATGTAAGGATGATTCTTTCGGGCGCTGAACCCAATTCTTACACATTCCCTTTTGTTTTGAAGTCTTGTGCGAGAGTTGGGGCAGCTCAGGAAGGGAAGCAGATCCATGGGCATGTGTTGAAGCATGGAGTTGGCTCTGATGCGTTTGTGCACACTTCTCTGATCAACATGTATGCGAAAAGTGGTGAATTGGACAATGCAAGGTTGGTTTTTGATAAGAGTCATCTGAGAGATGCGGTTTCGTTTACTGCTTTGATTACTGGCTATGTTTCAAGGGGTTGTATGGATGATGCCCGCAGCTTGTTTGATGAAATCTTAGTAAGAGATGCGGTGTCTTGGAATGCAATGATTTCGGGGTATGCTCAGAGCGGCCGGTTTGAGGAAGCGTTGGCTTTGTTTTCGGATATGCGAAAAGCAAATGTGGTTCCTAATGAGAGTACTATGCTTACTGTGCTTTCTGCTTGTGCTCAGTCGGGGTCACTTGAATTGGGAAAATGGGTTGCTTCTTGGATTGAAGACCAGGGACTTGGCTCAAATGTTAGGCTTGTTAATGCACTTATTGATATGTACTCAAAGTGTGGTGCTTTGGACACAGCTAGAGGTTTATTTGATGGGGCGATGGAAATGCAGGTGTTTTCCTCTCTGTACATGGATGCAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

341

Amino Acids

37.41

Weight (kDa)

6.25

Isoelectric Point (pI)

40.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	97 - 146	4e-09	PPR repeat family
PPR_1	PF12854	228 - 258	7.7e-07	PPR repeat
PPR_2	PF13041	230 - 277	1.3e-14	PPR repeat family
PPR	PF01535	232 - 261	1.6e-10	PPR repeat
TPR_24	PF23276	232 - 324	9.9e-06	Fungal tetratrico peptide repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08070 AT1G08070
fragaria_vesca	FvH4_1g03710 FvH4_1g04070
malus_domestica	MD02G1039500.v1.1 MD15G1176200.v1.1 MD15G1180300.v1.1
prunus_persica	Prupe.7G236200_v2.0.a1 Prupe.7G239300_v2.0.a1
pyrus_communis	pycom02g03280 pycom15g15800 pycom15g16170 pycom15g16180
rosa_chinensis	RchiOBHm_Chr2g0089161 RchiOBHm_Chr2g0089561
rosa_laevigata	RLG00000015999 RLG00000016040
rosa_multiflora	Rmu_co8347093.1_g000001 Rmu_sc0006193.1_g000005 Rmu_sc0008909.1_g000002 Rmu_sc0023591.1_g000001
rosa_rugosa	Rorug01G0488000 Rorug02G0001500
rosa_samantha	Rh2AG043600 Rh2BG042300 Rh2CG043600 Rh2CG047500 Rh2DG042700
rosa_wichuraiana	Rw2G003400 Rw2G003590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	982
Acc36I	ACCTGC	1 cut(s)	982
AccBSI	CCGCTC	1 cut(s)	732
AciI	CCGC	5 cut(s)	69, 599, 658, 692, 732
AclWI	GGATC	2 cut(s)	71, 460
AcoI	YGGCCR	1 cut(s)	733
AfaI	GTAC	4 cut(s)	86, 802, 932, 1010
AfiI	CCNNNNNNNGG	1 cut(s)	742
AflIII	ACRYGT	1 cut(s)	531
AgsI	TTSAA	6 cut(s)	334, 424, 484, 636, 848, 878
AjiI	CACGTC	1 cut(s)	61
AjnI	CCWGG	1 cut(s)	882
AluBI	AGCT	4 cut(s)	214, 449, 663, 959
AluI	AGCT	4 cut(s)	214, 449, 663, 959
Alw21I	GWGCWC	2 cut(s)	516, 832
Alw44I	GTGCAC	1 cut(s)	512
AlwI	GGATC	2 cut(s)	71, 460
AoxI	GGCC	3 cut(s)	181, 351, 733
ApaLI	GTGCAC	1 cut(s)	512
ApeKI	GCWGC	2 cut(s)	446, 660
AspLEI	GCGC	2 cut(s)	230, 389
AspS9I	GGNCC	1 cut(s)	247
AsuHPI	GGTGA	1 cut(s)	560
AsuII	TTCGAA	1 cut(s)	273
AvaII	GGWCC	1 cut(s)	247
BaeGI	GKGCMC	1 cut(s)	516
BbsI	GAAGAC	3 cut(s)	18, 262, 885
Bbv12I	GWGCWC	2 cut(s)	516, 832
BbvI	GCAGC	2 cut(s)	458, 672
BccI	CCATC	3 cut(s)	115, 968, 976
BceAI	ACGGC	2 cut(s)	215, 338
BcgI	CGANNNNNNTGC	6 cut(s)	199, 233, 696, 730, 970, 1004
BciT130I	CCWGG	1 cut(s)	884
BclI	TGATCA	1 cut(s)	525
BfaI	CTAG	1 cut(s)	960
BfoI	RGCGCY	1 cut(s)	390
BfuAI	ACCTGC	1 cut(s)	982
BisI	GCNGC	3 cut(s)	447, 661, 733
BlsI	GCNGC	3 cut(s)	448, 662, 734
BmcAI	AGTACT	1 cut(s)	802
Bme1390I	CCNGG	1 cut(s)	884
Bme18I	GGWCC	1 cut(s)	247
BmgBI	CACGTC	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	247
BmiI	GGNNCC	2 cut(s)	248, 789
BmrFI	CCNGG	1 cut(s)	884
BmsI	GCATC	6 cut(s)	147, 493, 586, 643, 679, 1006
BpiI	GAAGAC	3 cut(s)	18, 262, 885
Bpu10I	CCTNAGC	1 cut(s)	450
Bpu14I	TTCGAA	1 cut(s)	273
BsaJI	CCNNGG	3 cut(s)	354, 469, 883
Bsc4I	CCNNNNNNNGG	1 cut(s)	742
Bse118I	RCCGGY	2 cut(s)	179, 735
Bse1I	ACTGG	1 cut(s)	628
Bse3DI	GCAATG	1 cut(s)	714
BseBI	CCWGG	1 cut(s)	884
BseDI	CCNNGG	3 cut(s)	354, 469, 883
BseGI	GGATG	4 cut(s)	138, 378, 655, 1021
BseLI	CCNNNNNNNGG	1 cut(s)	742
BseMI	GCAATG	1 cut(s)	714
BseMII	CTCAG	4 cut(s)	464, 581, 740, 845
BseNI	ACTGG	1 cut(s)	628
BseRI	GAGGAG	2 cut(s)	83, 110
BseSI	GKGCMC	1 cut(s)	516
BseX3I	CGGCCG	1 cut(s)	733
BseXI	GCAGC	2 cut(s)	458, 672
Bsh1285I	CGRYCG	1 cut(s)	736
BshFI	GGCC	3 cut(s)	183, 353, 735
BsiEI	CGRYCG	1 cut(s)	736
BsiHKAI	GWGCWC	2 cut(s)	516, 832
BsiSI	CCGG	2 cut(s)	180, 736
BslFI	GGGAC	2 cut(s)	260, 900
BslI	CCNNNNNNNGG	1 cut(s)	742
BsmFI	GGGAC	2 cut(s)	260, 900
BsmI	GAATGC	2 cut(s)	281, 709
BsnI	GGCC	3 cut(s)	183, 353, 735
Bsp119I	TTCGAA	1 cut(s)	273
Bsp1286I	GDGCHC	2 cut(s)	516, 832
Bsp1407I	TGTACA	1 cut(s)	1008
Bsp143I	GATC	3 cut(s)	76, 465, 525
Bsp19I	CCATGG	1 cut(s)	469
BspACI	CCGC	5 cut(s)	69, 599, 658, 692, 732
BspANI	GGCC	3 cut(s)	183, 353, 735
BspCNI	CTCAG	4 cut(s)	463, 582, 739, 844
BspLI	GGNNCC	2 cut(s)	248, 789
BspMI	ACCTGC	1 cut(s)	982
BspPI	GGATC	2 cut(s)	71, 460
BspT104I	TTCGAA	1 cut(s)	273
BsrBI	CCGCTC	1 cut(s)	732
BsrDI	GCAATG	1 cut(s)	714
BsrFI	RCCGGY	2 cut(s)	179, 735
BsrGI	TGTACA	1 cut(s)	1008
BsrI	ACTGG	1 cut(s)	628
BssAI	RCCGGY	2 cut(s)	179, 735
BssECI	CCNNGG	3 cut(s)	354, 469, 883
BssMI	GATC	3 cut(s)	76, 465, 525
BssT1I	CCWWGG	1 cut(s)	469
Bst2UI	CCWGG	1 cut(s)	884
Bst4CI	ACNGT	1 cut(s)	814
BstAUI	TGTACA	1 cut(s)	1008
BstBI	TTCGAA	1 cut(s)	273
BstC8I	GCNNGC	2 cut(s)	212, 658
BstDEI	CTNAG	5 cut(s)	450, 590, 679, 726, 831
BstDSI	CCRYGG	2 cut(s)	354, 469
BstF5I	GGATG	4 cut(s)	138, 378, 655, 1021
BstH2I	RGCGCY	1 cut(s)	390
BstHHI	GCGC	2 cut(s)	230, 389
BstKTI	GATC	3 cut(s)	79, 468, 528
BstMBI	GATC	3 cut(s)	76, 465, 525
BstMCI	CGRYCG	1 cut(s)	736
BstMWI	GCNNNNNNNGC	1 cut(s)	814
BstNI	CCWGG	1 cut(s)	884
BstNSI	RCATGY	2 cut(s)	479, 535
BstSCI	CCNGG	1 cut(s)	882
BstSLI	GKGCMC	1 cut(s)	516
BstV1I	GCAGC	2 cut(s)	458, 672
BstV2I	GAAGAC	3 cut(s)	18, 262, 885
BstX2I	RGATCY	1 cut(s)	465
BstXI	CCANNNNNNTGG	1 cut(s)	890
BstYI	RGATCY	1 cut(s)	465
BstZI	CGGCCG	1 cut(s)	733
BsuRI	GGCC	3 cut(s)	183, 353, 735
BtgI	CCRYGG	2 cut(s)	354, 469
BtgZI	GCGATG	1 cut(s)	995
BtrI	CACGTC	1 cut(s)	61
BtsCI	GGATG	4 cut(s)	138, 378, 655, 1021
BveI	ACCTGC	1 cut(s)	982
Cac8I	GCNNGC	2 cut(s)	212, 658
CfoI	GCGC	2 cut(s)	230, 389
Cfr10I	RCCGGY	2 cut(s)	179, 735
Cfr13I	GGNCC	1 cut(s)	247
Csp6I	GTAC	4 cut(s)	85, 801, 931, 1009
CviAII	CATG	5 cut(s)	470, 476, 488, 532, 1012
CviQI	GTAC	4 cut(s)	85, 801, 931, 1009
DdeI	CTNAG	5 cut(s)	450, 590, 679, 726, 831
DpnI	GATC	3 cut(s)	78, 467, 527
DpnII	GATC	3 cut(s)	76, 465, 525
EaeI	YGGCCR	1 cut(s)	733
EagI	CGGCCG	1 cut(s)	733
EclXI	CGGCCG	1 cut(s)	733
Eco130I	CCWWGG	1 cut(s)	469
Eco47I	GGWCC	1 cut(s)	247
Eco52I	CGGCCG	1 cut(s)	733
EcoO109I	RGGNCCY	1 cut(s)	247
EcoRII	CCWGG	1 cut(s)	882
EcoT14I	CCWWGG	1 cut(s)	469
ErhI	CCWWGG	1 cut(s)	469
FaeI	CATG	5 cut(s)	473, 479, 491, 535, 1015
FaqI	GGGAC	2 cut(s)	260, 900
FatI	CATG	5 cut(s)	469, 475, 487, 531, 1011
FauI	CCCGC	2 cut(s)	76, 665
FbaI	TGATCA	1 cut(s)	525
Fnu4HI	GCNGC	3 cut(s)	447, 661, 733
FokI	GGATG	3 cut(s)	125, 385, 662
Fsp4HI	GCNGC	3 cut(s)	447, 661, 733
FspBI	CTAG	1 cut(s)	960
GlaI	GCGC	2 cut(s)	229, 388
GluI	GCNGC	3 cut(s)	447, 661, 733
HaeII	RGCGCY	1 cut(s)	390
HaeIII	GGCC	3 cut(s)	183, 353, 735
HapII	CCGG	2 cut(s)	180, 736
HhaI	GCGC	2 cut(s)	230, 389
Hin1II	CATG	5 cut(s)	473, 479, 491, 535, 1015
Hin6I	GCGC	2 cut(s)	228, 387
HinP1I	GCGC	2 cut(s)	228, 387
HinfI	GANTC	3 cut(s)	286, 376, 583
HpaII	CCGG	2 cut(s)	180, 736
HphI	GGTGA	1 cut(s)	560
Hpy166II	GTNNAC	3 cut(s)	160, 514, 609
Hpy188I	TCNGA	7 cut(s)	76, 291, 502, 525, 591, 729, 766
Hpy188III	TCNNGA	2 cut(s)	175, 452
Hpy8I	GTNNAC	3 cut(s)	160, 514, 609
HpyAV	CCTTC	2 cut(s)	65, 449
HpyCH4III	ACNGT	1 cut(s)	814
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	7 cut(s)	132, 514, 563, 707, 917, 991, 1019
HpyF10VI	GCNNNNNNNGC	1 cut(s)	814
HpyF3I	CTNAG	5 cut(s)	450, 590, 679, 726, 831
HpySE526I	ACGT	1 cut(s)	60
Hsp92II	CATG	5 cut(s)	473, 479, 491, 535, 1015
HspAI	GCGC	2 cut(s)	228, 387
Ksp22I	TGATCA	1 cut(s)	525
Kzo9I	GATC	3 cut(s)	76, 465, 525
Lsp1109I	GCAGC	2 cut(s)	458, 672
LweI	GCATC	6 cut(s)	147, 493, 586, 643, 679, 1006
MaeI	CTAG	1 cut(s)	960
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	1 cut(s)	840
MalI	GATC	3 cut(s)	78, 467, 527
MbiI	CCGCTC	1 cut(s)	732
MboI	GATC	3 cut(s)	76, 465, 525
MboII	GAAGA	4 cut(s)	12, 18, 262, 890
MflI	RGATCY	1 cut(s)	465
MhlI	GDGCHC	2 cut(s)	516, 832
MluCI	AATT	6 cut(s)	239, 312, 397, 551, 848, 1020
MlyI	GAGTC	1 cut(s)	592
MseI	TTAA	2 cut(s)	912, 1024
MslI	CAYNNNNRTG	1 cut(s)	474
MspI	CCGG	2 cut(s)	180, 736
MspR9I	CCNGG	1 cut(s)	884
Mva1269I	GAATGC	2 cut(s)	281, 709
MvaI	CCWGG	1 cut(s)	884
MwoI	GCNNNNNNNGC	1 cut(s)	814
NcoI	CCATGG	1 cut(s)	469
NdeII	GATC	3 cut(s)	76, 465, 525
NlaIII	CATG	5 cut(s)	473, 479, 491, 535, 1015
NlaIV	GGNNCC	2 cut(s)	248, 789
NmuCI	GTSAC	1 cut(s)	840
NspI	RCATGY	2 cut(s)	479, 535
NspV	TTCGAA	1 cut(s)	273
PaqCI	CACCTGC	1 cut(s)	982
PciI	ACATGT	1 cut(s)	531
PctI	GAATGC	2 cut(s)	281, 709
PfeI	GAWTC	2 cut(s)	286, 376
PkrI	GCNGC	3 cut(s)	448, 662, 734
PleI	GAGTC	1 cut(s)	591
PpsI	GAGTC	1 cut(s)	591
PpuMI	RGGWCCY	1 cut(s)	247
PscI	ACATGT	1 cut(s)	531
Psp5II	RGGWCCY	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	882
PspGI	CCWGG	1 cut(s)	882
PspN4I	GGNNCC	2 cut(s)	248, 789
PspPI	GGNCC	1 cut(s)	247
PspPPI	RGGWCCY	1 cut(s)	247
PsuI	RGATCY	1 cut(s)	465
RsaI	GTAC	4 cut(s)	86, 802, 932, 1010
RsaNI	GTAC	4 cut(s)	85, 801, 931, 1009
RseI	CAYNNNNRTG	1 cut(s)	474
SaqAI	TTAA	2 cut(s)	912, 1024
SatI	GCNGC	3 cut(s)	447, 661, 733
Sau3AI	GATC	3 cut(s)	76, 465, 525
Sau96I	GGNCC	1 cut(s)	247
ScaI	AGTACT	1 cut(s)	802
SchI	GAGTC	1 cut(s)	592
ScrFI	CCNGG	1 cut(s)	884
SduI	GDGCHC	2 cut(s)	516, 832
SfaNI	GCATC	6 cut(s)	147, 493, 586, 643, 679, 1006
SfuI	TTCGAA	1 cut(s)	273
SinI	GGWCC	1 cut(s)	247
SmiMI	CAYNNNNRTG	1 cut(s)	474
Sse9I	AATT	6 cut(s)	239, 312, 397, 551, 848, 1020
SsiI	CCGC	5 cut(s)	69, 599, 658, 692, 732
SspMI	CTAG	1 cut(s)	960
StyD4I	CCNGG	1 cut(s)	882
StyI	CCWWGG	1 cut(s)	469
TaaI	ACNGT	1 cut(s)	814
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	4 cut(s)	219, 273, 319, 338
TaqII	GACCGA	1 cut(s)	256
TasI	AATT	6 cut(s)	239, 312, 397, 551, 848, 1020
TatI	WGTACW	3 cut(s)	800, 930, 1008
TauI	GCSGC	1 cut(s)	735
TfiI	GAWTC	2 cut(s)	286, 376
Tru1I	TTAA	2 cut(s)	912, 1024
Tru9I	TTAA	2 cut(s)	912, 1024
TseFI	GTSAC	1 cut(s)	840
TseI	GCWGC	2 cut(s)	446, 660
Tsp45I	GTSAC	1 cut(s)	840
TspDTI	ATGAA	2 cut(s)	6, 687
TspGWI	ACGGA	1 cut(s)	72
VneI	GTGCAC	1 cut(s)	512
VpaK11BI	GGWCC	1 cut(s)	247
XceI	RCATGY	2 cut(s)	479, 535
XspI	CTAG	1 cut(s)	960
ZrmI	AGTACT	1 cut(s)	802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.