Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005071

Physical Location & Seq

Genomic Coordinates Forward (+)

57345015 .. 57347832

Gene Structure 2818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0488000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGTCTCTCTCCTCTTCCTTTGTTCCCCAGATAATCGGCAGCAGGTCCTCTCCACCAGTCTATTCTCCTGGTTTTCCTCTCCAGCTTCCTCGCGTTTCTCTCTTTTTATACCCCTCCTCATCTTTGGGTCCACCACATCTCCATCACAAAGCCACCACAAAGAAGCAACATTCTATGACGACCAGAGGTGCAGATTTTGAGACTGCTGCTGATGACGATGAGGAAGAGTACGCATACATTGAAGATGATGAAGAATTAGATGCCGACCCTTTTTTGCCTGAGAGATGGGATGTTGTGGGTCTTGGACAAGCCATGGTGGACTTTTCCGGCATGGTTGATGATGAGTTTCTGGGAAAGCTGGATTTAGAAAAGGGAACAAGGAAGCTTGTGAATCACGAAGAGAGAGGTAGAGTCTTGAGAGCAATGGATGGTTGTAGCTATAAGGCTGCTGCTGGTGGGTCCCTTTCCAACAGTCTAGTGGCCTTGGCCAGGCTTGGCAGTACATCCATTGGAGGCTCTCCCTTAAGTGTAGCTATGACAGGGAGTGTAGGGAGTGATCCGTTGGGTGGCTTCTACAGAGCAAAGTTACGACGAGCAAATTTGCATTTTCTTTCTCCACCTATCAAAGATGGGACAACAGGGACAGTAATAGTTCTCACTTCTTCAGATGCCCACCGTACAATGCTGGCATATCAGGGAACATCTTCGACTGTTAATTATGATTCATGCTTGGCTAGTGCAGTTTGCAATACAAAAATACTTGTAGTTGAGGGGTATTTGTTTGAACTTCCTGATACAATCAAAACAATTACAAAAGCCTGTGAAGAAGCACGCAGGTGTGGAGCGCTGGTCGCAGTTACAGCATCAGATGTTTCCTGCATTGAGAGACACTATGATGATTTCTGGGAAATTGTTGGGAACTATGCAGACATTGTTTTTGCAAACAGTGATGAAGCAAGAGCCTTCTGTCATTTTTCTTCCAAGGAGAGCCCCATTTCGGCTACAAGGTATCTCAGCCATTTTGTTCCATTCGCCTCGGTTACTGATGGACCAAGAGGCTCTTACATCGGTGTAAAAGGAGAAGCTGTATATATTCCTCCTTCTCCTTGTGTACCAGTGGACACTTGTGGTGCCGGGGATGCATATGCATCAGGAATTTTGTTTGGTATTTTACGAGGAGTGTCAGATTTAAAAGGAATAGGTACATTAGCAGCAAGGGTTGCATCCACGGTTGTTGGACAACAAGGCACTCGGCTTAGGGTTCAAGATGCAGTAGAGTTGGCAGAATCATTCACATTCCATCTCGATAGTTCCACTATTAGATCAGATATCGGGTCAGATCATATTTCCAGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

452

Amino Acids

48.4

Weight (kDa)

5.19

Isoelectric Point (pI)

46.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	147 - 419	1.1e-33	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08070 AT1G08070
fragaria_vesca	FvH4_1g03710 FvH4_1g04070
malus_domestica	MD02G1039500.v1.1 MD15G1176200.v1.1 MD15G1180300.v1.1
prunus_persica	Prupe.7G236200_v2.0.a1 Prupe.7G239300_v2.0.a1
pyrus_communis	pycom02g03280 pycom15g15800 pycom15g16170 pycom15g16180
rosa_chinensis	RchiOBHm_Chr2g0089161 RchiOBHm_Chr2g0089561
rosa_laevigata	RLG00000015999 RLG00000016040
rosa_multiflora	Rmu_co8347093.1_g000001 Rmu_sc0006193.1_g000005 Rmu_sc0008909.1_g000002 Rmu_sc0023591.1_g000001
rosa_rugosa	Rorug01G0488000 Rorug02G0001500
rosa_samantha	Rh2AG043600 Rh2BG042300 Rh2CG043600 Rh2CG047500 Rh2DG042700
rosa_wichuraiana	Rw2G003400 Rw2G003590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	825
Acc36I	ACCTGC	2 cut(s)	33, 825
AccB1I	GGYRCC	1 cut(s)	1130
AccII	CGCG	1 cut(s)	93
AclWI	GGATC	1 cut(s)	551
AcoI	YGGCCR	1 cut(s)	486
AcsI	RAATTY	2 cut(s)	598, 1155
AcuI	CTGAAG	1 cut(s)	648
AfaI	GTAC	5 cut(s)	230, 502, 679, 1113, 1204
AfeI	AGCGCT	1 cut(s)	846
AfiI	CCNNNNNNNGG	3 cut(s)	489, 566, 997
AflII	CTTAAG	1 cut(s)	523
AgsI	TTSAA	3 cut(s)	242, 785, 1265
AjnI	CCWGG	2 cut(s)	67, 488
AleI	CACNNNNGTG	1 cut(s)	835
AluBI	AGCT	7 cut(s)	85, 358, 385, 438, 533, 1085, 1353
AluI	AGCT	7 cut(s)	85, 358, 385, 438, 533, 1085, 1353
Alw26I	GTCTC	3 cut(s)	9, 194, 880
AlwI	GGATC	1 cut(s)	551
Aor51HI	AGCGCT	1 cut(s)	846
AoxI	GGCC	2 cut(s)	480, 486
ApeKI	GCWGC	5 cut(s)	39, 206, 446, 449, 1211
ApoI	RAATTY	2 cut(s)	598, 1155
ArsI	GACNNNNNNTTYG	2 cut(s)	920, 952
Asp700I	GAANNNNTTC	1 cut(s)	703
AspLEI	GCGC	1 cut(s)	847
AspS9I	GGNCC	4 cut(s)	45, 128, 459, 1049
AsuC2I	CCSGG	1 cut(s)	1135
AvaII	GGWCC	4 cut(s)	45, 128, 459, 1049
BalI	TGGCCA	1 cut(s)	488
BanI	GGYRCC	1 cut(s)	1130
BanII	GRGCYC	1 cut(s)	992
BbvI	GCAGC	5 cut(s)	51, 193, 433, 436, 1223
BccI	CCATC	6 cut(s)	150, 279, 422, 623, 1040, 1308
BciT130I	CCWGG	2 cut(s)	69, 490
BcnI	CCSGG	1 cut(s)	1135
BcoDI	GTCTC	3 cut(s)	9, 194, 880
BfaI	CTAG	2 cut(s)	476, 735
BfmI	CTRYAG	1 cut(s)	574
BfoI	RGCGCY	1 cut(s)	848
BfrI	CTTAAG	1 cut(s)	523
BfuAI	ACCTGC	2 cut(s)	33, 825
BisI	GCNGC	5 cut(s)	40, 207, 447, 450, 1212
BlsI	GCNGC	5 cut(s)	41, 208, 448, 451, 1213
Bme1390I	CCNGG	3 cut(s)	69, 490, 1135
Bme18I	GGWCC	4 cut(s)	45, 128, 459, 1049
BmgT120I	GGNCC	4 cut(s)	45, 128, 459, 1049
BmiI	GGNNCC	4 cut(s)	129, 460, 461, 1132
BmrFI	CCNGG	3 cut(s)	69, 490, 1135
BmsI	GCATC	7 cut(s)	250, 658, 872, 1129, 1157, 1232, 1258
BpmI	CTGGAG	1 cut(s)	65
Bpu10I	CCTNAGC	1 cut(s)	1256
BpuEI	CTTGAG	1 cut(s)	436
BpuMI	CCSGG	1 cut(s)	1135
BsaJI	CCNNGG	6 cut(s)	312, 483, 981, 1035, 1134, 1227
BsaXI	ACNNNNNCTCC	6 cut(s)	123, 153, 834, 864, 1071, 1101
Bsc4I	CCNNNNNNNGG	3 cut(s)	489, 566, 997
Bse1I	ACTGG	2 cut(s)	56, 1115
Bse3DI	GCAATG	1 cut(s)	429
BseBI	CCWGG	2 cut(s)	69, 490
BseDI	CCNNGG	6 cut(s)	312, 483, 981, 1035, 1134, 1227
BseGI	GGATG	5 cut(s)	295, 433, 503, 1144, 1223
BseLI	CCNNNNNNNGG	3 cut(s)	489, 566, 997
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	2 cut(s)	270, 1027
BseNI	ACTGG	2 cut(s)	56, 1115
BseRI	GAGGAG	2 cut(s)	106, 1191
BseXI	GCAGC	5 cut(s)	51, 193, 433, 436, 1223
BsgI	GTGCAG	2 cut(s)	210, 759
Bsh1236I	CGCG	1 cut(s)	93
BshFI	GGCC	2 cut(s)	482, 488
BshNI	GGYRCC	1 cut(s)	1130
BsiSI	CCGG	2 cut(s)	327, 1134
BslFI	GGGAC	3 cut(s)	445, 646, 655
BslI	CCNNNNNNNGG	3 cut(s)	489, 566, 997
BsmAI	GTCTC	3 cut(s)	9, 194, 880
BsmFI	GGGAC	3 cut(s)	445, 646, 655
BsnI	GGCC	2 cut(s)	482, 488
Bsp1286I	GDGCHC	1 cut(s)	992
Bsp143I	GATC	3 cut(s)	556, 1322, 1339
Bsp19I	CCATGG	1 cut(s)	312
BspANI	GGCC	2 cut(s)	482, 488
BspCNI	CTCAG	2 cut(s)	271, 1026
BspFNI	CGCG	1 cut(s)	93
BspLI	GGNNCC	4 cut(s)	129, 460, 461, 1132
BspMI	ACCTGC	2 cut(s)	33, 825
BspPI	GGATC	1 cut(s)	551
BspT107I	GGYRCC	1 cut(s)	1130
BspTI	CTTAAG	1 cut(s)	523
BsrDI	GCAATG	1 cut(s)	429
BsrI	ACTGG	2 cut(s)	56, 1115
BssECI	CCNNGG	6 cut(s)	312, 483, 981, 1035, 1134, 1227
BssMI	GATC	3 cut(s)	556, 1322, 1339
BssT1I	CCWWGG	3 cut(s)	312, 483, 981
Bst2UI	CCWGG	2 cut(s)	69, 490
Bst4CI	ACNGT	6 cut(s)	473, 646, 677, 712, 947, 1231
Bst6I	CTCTTC	3 cut(s)	19, 219, 393
BstAFI	CTTAAG	1 cut(s)	523
BstAPI	GCANNNNNTGC	1 cut(s)	1220
BstC8I	GCNNGC	2 cut(s)	687, 832
BstDEI	CTNAG	3 cut(s)	279, 1013, 1256
BstDSI	CCRYGG	2 cut(s)	312, 1227
BstENI	CCTNNNNNAGG	1 cut(s)	487
BstF5I	GGATG	5 cut(s)	295, 433, 503, 1144, 1223
BstFNI	CGCG	1 cut(s)	93
BstH2I	RGCGCY	1 cut(s)	848
BstHHI	GCGC	1 cut(s)	847
BstKTI	GATC	3 cut(s)	559, 1325, 1342
BstMAI	GTCTC	3 cut(s)	9, 194, 880
BstMBI	GATC	3 cut(s)	556, 1322, 1339
BstMWI	GCNNNNNNNGC	4 cut(s)	851, 860, 1139, 1220
BstNI	CCWGG	2 cut(s)	69, 490
BstSCI	CCNGG	3 cut(s)	67, 488, 1133
BstSFI	CTRYAG	1 cut(s)	574
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	5 cut(s)	51, 193, 433, 436, 1223
BsuRI	GGCC	2 cut(s)	482, 488
BtgI	CCRYGG	2 cut(s)	312, 1227
BtsCI	GGATG	5 cut(s)	295, 433, 503, 1144, 1223
BtsIMutI	CAGTG	2 cut(s)	952, 1122
BveI	ACCTGC	2 cut(s)	33, 825
Cac8I	GCNNGC	2 cut(s)	687, 832
CfoI	GCGC	1 cut(s)	847
Cfr13I	GGNCC	4 cut(s)	45, 128, 459, 1049
Csp6I	GTAC	5 cut(s)	229, 501, 678, 1112, 1203
CspCI	CAANNNNNGTGG	2 cut(s)	1216, 1251
CviAII	CATG	3 cut(s)	313, 331, 726
CviQI	GTAC	5 cut(s)	229, 501, 678, 1112, 1203
DdeI	CTNAG	3 cut(s)	279, 1013, 1256
DpnI	GATC	3 cut(s)	558, 1324, 1341
DpnII	GATC	3 cut(s)	556, 1322, 1339
DraI	TTTAAA	1 cut(s)	1191
EaeI	YGGCCR	1 cut(s)	486
Eam1104I	CTCTTC	3 cut(s)	19, 219, 393
EarI	CTCTTC	3 cut(s)	19, 219, 393
Eco130I	CCWWGG	3 cut(s)	312, 483, 981
Eco24I	GRGCYC	1 cut(s)	992
Eco32I	GATATC	1 cut(s)	1330
Eco47I	GGWCC	4 cut(s)	45, 128, 459, 1049
Eco47III	AGCGCT	1 cut(s)	846
Eco57I	CTGAAG	1 cut(s)	648
EcoNI	CCTNNNNNAGG	1 cut(s)	487
EcoO109I	RGGNCCY	2 cut(s)	45, 459
EcoRII	CCWGG	2 cut(s)	67, 488
EcoRV	GATATC	1 cut(s)	1330
EcoT14I	CCWWGG	3 cut(s)	312, 483, 981
EcoT22I	ATGCAT	2 cut(s)	1144, 1150
EcoT38I	GRGCYC	1 cut(s)	992
ErhI	CCWWGG	3 cut(s)	312, 483, 981
FaeI	CATG	3 cut(s)	316, 334, 729
FalI	AAGNNNNNCTT	2 cut(s)	1045, 1077
FaqI	GGGAC	3 cut(s)	445, 646, 655
FatI	CATG	3 cut(s)	312, 330, 725
FauNDI	CATATG	1 cut(s)	1144
Fnu4HI	GCNGC	5 cut(s)	40, 207, 447, 450, 1212
FokI	GGATG	5 cut(s)	302, 440, 490, 1151, 1210
FriOI	GRGCYC	1 cut(s)	992
Fsp4HI	GCNGC	5 cut(s)	40, 207, 447, 450, 1212
FspBI	CTAG	2 cut(s)	476, 735
GlaI	GCGC	1 cut(s)	846
GluI	GCNGC	5 cut(s)	40, 207, 447, 450, 1212
GsuI	CTGGAG	1 cut(s)	65
HaeII	RGCGCY	1 cut(s)	848
HaeIII	GGCC	2 cut(s)	482, 488
HapII	CCGG	2 cut(s)	327, 1134
HhaI	GCGC	1 cut(s)	847
Hin1II	CATG	3 cut(s)	316, 334, 729
Hin6I	GCGC	1 cut(s)	845
HinP1I	GCGC	1 cut(s)	845
HindIII	AAGCTT	1 cut(s)	383
HinfI	GANTC	4 cut(s)	391, 411, 722, 1286
HpaII	CCGG	2 cut(s)	327, 1134
Hpy166II	GTNNAC	4 cut(s)	131, 319, 1112, 1120
Hpy188I	TCNGA	5 cut(s)	667, 868, 1186, 1327, 1339
Hpy188III	TCNNGA	6 cut(s)	395, 415, 791, 1152, 1265, 1304
Hpy8I	GTNNAC	4 cut(s)	131, 319, 1112, 1120
Hpy99I	CGWCG	1 cut(s)	594
HpyAV	CCTTC	2 cut(s)	973, 1110
HpyCH4III	ACNGT	6 cut(s)	473, 646, 677, 712, 947, 1231
HpyF10VI	GCNNNNNNNGC	4 cut(s)	851, 860, 1139, 1220
HpyF3I	CTNAG	3 cut(s)	279, 1013, 1256
Hsp92II	CATG	3 cut(s)	316, 334, 729
HspAI	GCGC	1 cut(s)	845
KflI	GGGWCCC	1 cut(s)	459
Kzo9I	GATC	3 cut(s)	556, 1322, 1339
LmnI	GCTCC	1 cut(s)	842
Lsp1109I	GCAGC	5 cut(s)	51, 193, 433, 436, 1223
LweI	GCATC	7 cut(s)	250, 658, 872, 1129, 1157, 1232, 1258
MaeI	CTAG	2 cut(s)	476, 735
MaeIII	GTNAC	3 cut(s)	585, 856, 1039
MalI	GATC	3 cut(s)	558, 1324, 1341
MboI	GATC	3 cut(s)	556, 1322, 1339
MboII	GAAGA	9 cut(s)	6, 236, 254, 263, 410, 654, 696, 836, 969
MhlI	GDGCHC	1 cut(s)	992
MlsI	TGGCCA	1 cut(s)	488
MluCI	AATT	6 cut(s)	254, 598, 715, 807, 909, 1155
MluNI	TGGCCA	1 cut(s)	488
MlyI	GAGTC	1 cut(s)	420
MmeI	TCCRAC	2 cut(s)	492, 1216
Mox20I	TGGCCA	1 cut(s)	488
Mph1103I	ATGCAT	2 cut(s)	1144, 1150
MroXI	GAANNNNTTC	1 cut(s)	703
MscI	TGGCCA	1 cut(s)	488
MseI	TTAA	3 cut(s)	524, 714, 1190
MslI	CAYNNNNRTG	2 cut(s)	835, 894
Msp20I	TGGCCA	1 cut(s)	488
MspCI	CTTAAG	1 cut(s)	523
MspI	CCGG	2 cut(s)	327, 1134
MspR9I	CCNGG	3 cut(s)	69, 490, 1135
MvaI	CCWGG	2 cut(s)	69, 490
MvnI	CGCG	1 cut(s)	93
MwoI	GCNNNNNNNGC	4 cut(s)	851, 860, 1139, 1220
NciI	CCSGG	1 cut(s)	1135
NcoI	CCATGG	1 cut(s)	312
NdeI	CATATG	1 cut(s)	1144
NdeII	GATC	3 cut(s)	556, 1322, 1339
NlaIII	CATG	3 cut(s)	316, 334, 729
NlaIV	GGNNCC	4 cut(s)	129, 460, 461, 1132
NmeAIII	GCCGAG	1 cut(s)	1231
NsiI	ATGCAT	2 cut(s)	1144, 1150
OliI	CACNNNNGTG	1 cut(s)	835
PaqCI	CACCTGC	1 cut(s)	825
PdmI	GAANNNNTTC	1 cut(s)	703
PfeI	GAWTC	3 cut(s)	391, 722, 1286
PkrI	GCNGC	5 cut(s)	41, 208, 448, 451, 1213
PleI	GAGTC	1 cut(s)	419
PpsI	GAGTC	1 cut(s)	419
PpuMI	RGGWCCY	2 cut(s)	45, 459
Psp5II	RGGWCCY	2 cut(s)	45, 459
Psp6I	CCWGG	2 cut(s)	67, 488
PspGI	CCWGG	2 cut(s)	67, 488
PspN4I	GGNNCC	4 cut(s)	129, 460, 461, 1132
PspPI	GGNCC	4 cut(s)	45, 128, 459, 1049
PspPPI	RGGWCCY	2 cut(s)	45, 459
RsaI	GTAC	5 cut(s)	230, 502, 679, 1113, 1204
RsaNI	GTAC	5 cut(s)	229, 501, 678, 1112, 1203
RseI	CAYNNNNRTG	2 cut(s)	835, 894
SaqAI	TTAA	3 cut(s)	524, 714, 1190
SatI	GCNGC	5 cut(s)	40, 207, 447, 450, 1212
Sau3AI	GATC	3 cut(s)	556, 1322, 1339
Sau96I	GGNCC	4 cut(s)	45, 128, 459, 1049
SchI	GAGTC	1 cut(s)	420
ScrFI	CCNGG	3 cut(s)	69, 490, 1135
SduI	GDGCHC	1 cut(s)	992
SfaNI	GCATC	7 cut(s)	250, 658, 872, 1129, 1157, 1232, 1258
SfcI	CTRYAG	1 cut(s)	574
SinI	GGWCC	4 cut(s)	45, 128, 459, 1049
SmiMI	CAYNNNNRTG	2 cut(s)	835, 894
SmlI	CTYRAG	2 cut(s)	415, 523
SmoI	CTYRAG	2 cut(s)	415, 523
Sse9I	AATT	6 cut(s)	254, 598, 715, 807, 909, 1155
SspMI	CTAG	2 cut(s)	476, 735
StyD4I	CCNGG	3 cut(s)	67, 488, 1133
StyI	CCWWGG	3 cut(s)	312, 483, 981
TaaI	ACNGT	6 cut(s)	473, 646, 677, 712, 947, 1231
TaqI	TCGA	2 cut(s)	707, 1305
TasI	AATT	6 cut(s)	254, 598, 715, 807, 909, 1155
TatI	WGTACW	1 cut(s)	500
TfiI	GAWTC	3 cut(s)	391, 722, 1286
Tru1I	TTAA	3 cut(s)	524, 714, 1190
Tru9I	TTAA	3 cut(s)	524, 714, 1190
TscAI	CASTG	2 cut(s)	952, 1122
TseI	GCWGC	5 cut(s)	39, 206, 446, 449, 1211
TspDTI	ATGAA	3 cut(s)	264, 714, 966
TspGWI	ACGGA	1 cut(s)	549
TspRI	CASTG	2 cut(s)	952, 1122
Vha464I	CTTAAG	1 cut(s)	523
VpaK11BI	GGWCC	4 cut(s)	45, 128, 459, 1049
XagI	CCTNNNNNAGG	1 cut(s)	487
XapI	RAATTY	2 cut(s)	598, 1155
XcmI	CCANNNNNNNNNTGG	1 cut(s)	475
XmnI	GAANNNNTTC	1 cut(s)	703
XspI	CTAG	2 cut(s)	476, 735
Zsp2I	ATGCAT	2 cut(s)	1144, 1150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.