RLG00000016040

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0005071
Physical Location & Seq
Reverse (-)
3366666 .. 3368816
2151 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016040

Sequence Viewer

Length: 2151 bp
ATGGCTGCTCCGCTTTCCCTCCACCACATTAGACCACATTTCTTTCCCGACAATCCCCTCTTACATAAACCCACCGCCATAACGGTCGCAACTACCACCGCCGCCGCGGCTACTAAAACTAACCAAGCTCAACAACACCCATGTCTCACGTTACTAGACAACTGCTCCAGCATGTCTGAGCTCAAGCAAATCCACGCCCAGCTCCTCCGGAATGGTCTCTTCTTCGACGCATTCACAGCCAGCAAGATCGTCGCCTTTTCGGCTTTAGAAGACTCCGGAAACCTCACTTATTCCCGTTCAGTCCTCACCCAAATCCCCAATCCCAATGGTTTCACTTGTAATTCTGTTATCCGAGGCTATACGAACAAGGGTTTGGACCGGGAGGCCATTTCTTTCTACCGAGAAATGATTGCACGGGGTTGGATACCTGACCGGTTCACATTCCCTTCGTTGTTCAAGTCATGTAAGGATTTGGGTGAAGGGAAACAGCTGCATTGTCAATCTACCAAGCTAGGCTTCGCTTCGGATTCGTACATTCAGAACACTCTGATGAACATGTACTCGACTTGCGGGTGTTTGGTCTCTGCAAGGAAGGTGTTTGATAAAATGAGTGACAAGAGTGTGGTGTCTTGGGCGACCATGATCGACGCTTATGCGCGGTGGGATCAATCCGCTCAAGCTTTGAAGCTGTTTGATAAGATGGAGAGGGAAAATGTGGATCCTAATGAGGTTACTTTGCTTAATGTTTTGACTGCGTGTGGGATGGCGAGGGATTTGGAAACTGCGAAAAGGGTGCACCGATGCATTCAGGAGTACAGTTTTGGGTCGCATTTGAAGCTCAGTACGGCTCTTATGGATGTTTATTGCAAATGTGGATGTGTATCGCTTGCGCGAGAATTTTTCGACAAAATGCCTGAGAAGAACTTGTTCTGTTGGAACATCATGATCAATGGACATGTAGAGGAAAGTGACTATGATGAGGCCTTCCTACTCTTTCGTAGAATGCAACTTGAGGGAGAAAAGGGGGATGAGGTGACTATGGTGAGTTTATTGCTTGCTTGCAGCAATTTGGGAGCTCTAGAGCTTGGAAAGTGGCTGCACGCCTATATTGAAAAGCAGAAAATTGAGGTGGATGTTGCTCTTGGGACGGCTCTTGTTGACATGTACGCCAAGTGCGGCAGCATAGACATTGCATCAGATGTTTTCCGAACACTGCCTGCGAAGGATTTGATGACTTGGACAGCCTTGATTTCTGGTTTTGCAATGTGTGGACAGGGGAAGAAGGCTTTGGAGCATTTCCATGAGATGCAGATGAGTGGAGTGAAACCAGATGCAATAACCTTTGTTGGGGTATTGGCTGCTTGTAGCCATGCTGGGTTAGTGGATGAAGGACTTTCACATTTTAACTCAATGTCTGAAGTGTATGGGATTCAGCCTAGCATTGAACACTATGGCTGTATGGTTGATGTGTTAGGCAGAGCTGGTCGAATAGCTGAAGCAGAGGAGTTGATTCATAAGATGCGAATGAAACCAGACCGTTTCGTTTTGGGAGGGCTTCTTGGTGCCTGCAGAATCCATGGCAACCTTGAGGCTGCAGAAAGAGCAGCTAAACAGCTCCTTGAACTTAATCCGGACGATGAAGGAACATATGTGCTTCTATCAAACTTATACAGCTCTATGGAAAAATGGGAAGAAGCAGTAAGAATTAGGAAACTCATGGCAGAAAGGAGTATAAAGAAACCTCCTGGATGCAGTCTGATTGAGGTCGATGGAATTGTCCATGAATTTGTGAAGGGTGATTCATCTCACCCACAAACCACAAACATCTACGAAATGCTTGAAGACATGATCAGCCGATTGAAGAAAGCCGGTTATGTCCCTCAGAAATCAGAGGTGTTGTTTGATATGGATGAAGAAGAGAAGGAGACTGCACTTAGCCTCCACAGTGAAAAACTAGCAATTGCATTTGGGCTCATAAGTACAAATCCTGGGACGCCGATACGAATAGTGAAAAACCTTCGTGTATGCAGTGATTGCCACACTGCAACCAAGCTCATATCCAAAGTTTACAACAGGGAGATAATAGTTCGGGACAGGAATCGTTTCCATCAATTTAAGGATGGATCTTGTTCTTGTAAGGATTTCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

717

Amino Acids

80.1

Weight (kDa)

6.31

Isoelectric Point (pI)

34.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 108 - 155 1e-08 PPR repeat family
PPR_2 PF13041 207 - 253 1.5e-09 PPR repeat family
PPR_2 PF13041 308 - 355 5.1e-08 PPR repeat family
PPR PF01535 311 - 339 1e-05 PPR repeat
PPR_2 PF13041 409 - 456 5.5e-10 PPR repeat family
PPR PF01535 412 - 441 2e-06 PPR repeat
E_motif PF20431 526 - 588 1.2e-20 E motif
DYW_deaminase PF14432 624 - 716 7.7e-41 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1562
AccBSI CCGCTC 1 cut(s) 674
AccII CGCG 3 cut(s) 107, 658, 892
AccIII TCCGGA 3 cut(s) 207, 275, 1630
AclWI GGATC 4 cut(s) 672, 713, 726, 2131
AcsI RAATTY 2 cut(s) 896, 1784
AcuI CTGAAG 2 cut(s) 1437, 1515
AcyI GRCGYC 1 cut(s) 1994
AfaI GTAC 6 cut(s) 533, 560, 815, 844, 1166, 1981
AfiI CCNNNNNNNGG 1 cut(s) 1347
AflIII ACRYGT 3 cut(s) 555, 955, 1161
AgeI ACCGGT 1 cut(s) 432
AgsI TTSAA 8 cut(s) 457, 685, 835, 1112, 1445, 1622, 1841, 1861
AjnI CCWGG 2 cut(s) 1744, 1987
AjuI GAANNNNNNNTTGG 6 cut(s) 356, 388, 500, 532, 1271, 1303
Alw21I GWGCWC 3 cut(s) 183, 798, 1078
Alw26I GTCTC 4 cut(s) 149, 221, 586, 1919
Alw44I GTGCAC 1 cut(s) 794
AlwI GGATC 4 cut(s) 672, 713, 726, 2131
Aor13HI TCCGGA 3 cut(s) 207, 275, 1630
AoxI GGCC 2 cut(s) 384, 981
ApaLI GTGCAC 1 cut(s) 794
ApeKI GCWGC 8 cut(s) 5, 490, 1062, 1096, 1179, 1358, 1592, 1604
ApoI RAATTY 2 cut(s) 896, 1784
AsiGI ACCGGT 1 cut(s) 432
Asp700I GAANNNNTTC 2 cut(s) 926, 2102
AspLEI GCGC 2 cut(s) 658, 892
AspS9I GGNCC 1 cut(s) 376
AsuC2I CCSGG 1 cut(s) 380
AsuHPI GGTGA 6 cut(s) 298, 488, 1045, 1054, 1799, 1808
AvaII GGWCC 1 cut(s) 376
BaeGI GKGCMC 1 cut(s) 798
BamHI GGATCC 1 cut(s) 718
BanI GGYRCC 1 cut(s) 1562
BanII GRGCYC 3 cut(s) 183, 1078, 1974
BbsI GAAGAC 2 cut(s) 276, 1848
Bbv12I GWGCWC 3 cut(s) 183, 798, 1078
BbvI GCAGC 7 cut(s) 477, 1074, 1083, 1191, 1345, 1579, 1616
BccI CCATC 5 cut(s) 694, 757, 1763, 2114, 2115
BceAI ACGGC 2 cut(s) 861, 1164
BcgI CGANNNNNNTGC 6 cut(s) 232, 266, 635, 669, 775, 809
BciT130I CCWGG 2 cut(s) 1746, 1989
BciVI GTATCC 1 cut(s) 417
BclI TGATCA 2 cut(s) 945, 1848
BcnI CCSGG 1 cut(s) 380
BcoDI GTCTC 4 cut(s) 149, 221, 586, 1919
BfaI CTAG 5 cut(s) 155, 512, 1079, 1437, 1955
BfmI CTRYAG 2 cut(s) 1567, 1593
BfuI GTATCC 1 cut(s) 417
BglI GCCNNNNNGGC 2 cut(s) 107, 260
Bme1390I CCNGG 3 cut(s) 380, 1746, 1989
Bme18I GGWCC 1 cut(s) 376
BmgT120I GGNCC 1 cut(s) 376
BmiI GGNNCC 2 cut(s) 720, 1564
BmrFI CCNGG 3 cut(s) 380, 1746, 1989
BmsI GCATC 6 cut(s) 791, 1202, 1296, 1321, 1509, 1739
BpiI GAAGAC 2 cut(s) 276, 1848
BpmI CTGGAG 1 cut(s) 151
BpuEI CTTGAG 4 cut(s) 167, 660, 1031, 1607
BpuMI CCSGG 1 cut(s) 380
BsaBI GATNNNNATC 1 cut(s) 880
BsaHI GRCGYC 1 cut(s) 1994
BsaI GGTCTC 2 cut(s) 221, 586
BsaJI CCNNGG 4 cut(s) 105, 352, 1576, 1988
BsaWI WCCGGW 4 cut(s) 207, 275, 432, 1630
BsaXI ACNNNNNCTCC 4 cut(s) 149, 179, 1923, 1953
Bsc4I CCNNNNNNNGG 1 cut(s) 1347
Bse118I RCCGGY 2 cut(s) 432, 1868
Bse3DI GCAATG 2 cut(s) 1188, 1269
Bse8I GATNNNNATC 1 cut(s) 880
BseAI TCCGGA 3 cut(s) 207, 275, 1630
BseBI CCWGG 2 cut(s) 1746, 1989
BseDI CCNNGG 4 cut(s) 105, 352, 1576, 1988
BseGI GGATG 9 cut(s) 768, 862, 881, 1033, 1138, 1390, 1754, 1915, 2125
BseJI GATNNNNATC 1 cut(s) 880
BseLI CCNNNNNNNGG 1 cut(s) 1347
BseMI GCAATG 2 cut(s) 1188, 1269
BseMII CTCAG 4 cut(s) 168, 853, 906, 1895
BseRI GAGGAG 2 cut(s) 194, 1517
BseSI GKGCMC 1 cut(s) 798
BseXI GCAGC 7 cut(s) 477, 1074, 1083, 1191, 1345, 1579, 1616
BseYI CCCAGC 2 cut(s) 198, 1373
BsgI GTGCAG 2 cut(s) 1082, 1914
Bsh1236I CGCG 3 cut(s) 107, 658, 892
Bsh1285I CGRYCG 1 cut(s) 87
BshFI GGCC 2 cut(s) 386, 983
BshNI GGYRCC 1 cut(s) 1562
BshTI ACCGGT 1 cut(s) 432
BsiEI CGRYCG 1 cut(s) 87
BsiHKAI GWGCWC 3 cut(s) 183, 798, 1078
BsiSI CCGG 6 cut(s) 208, 276, 379, 433, 1631, 1869
BslFI GGGAC 4 cut(s) 1159, 1862, 2005, 2105
BslI CCNNNNNNNGG 1 cut(s) 1347
BsmAI GTCTC 4 cut(s) 149, 221, 586, 1919
BsmFI GGGAC 4 cut(s) 1159, 1862, 2005, 2105
BsmI GAATGC 3 cut(s) 230, 804, 1008
BsnI GGCC 2 cut(s) 386, 983
Bso31I GGTCTC 2 cut(s) 221, 586
Bsp1286I GDGCHC 4 cut(s) 183, 798, 1078, 1974
Bsp13I TCCGGA 3 cut(s) 207, 275, 1630
Bsp143I GATC 7 cut(s) 246, 642, 664, 718, 945, 1848, 2123
Bsp19I CCATGG 1 cut(s) 1576
BspANI GGCC 2 cut(s) 386, 983
BspCNI CTCAG 4 cut(s) 169, 852, 907, 1894
BspEI TCCGGA 3 cut(s) 207, 275, 1630
BspFNI CGCG 3 cut(s) 107, 658, 892
BspHI TCATGA 1 cut(s) 942
BspLI GGNNCC 2 cut(s) 720, 1564
BspMAI CTGCAG 2 cut(s) 1571, 1597
BspPI GGATC 4 cut(s) 672, 713, 726, 2131
BspT107I GGYRCC 1 cut(s) 1562
BspTNI GGTCTC 2 cut(s) 221, 586
BsrBI CCGCTC 1 cut(s) 674
BsrDI GCAATG 2 cut(s) 1188, 1269
BsrFI RCCGGY 2 cut(s) 432, 1868
BssAI RCCGGY 2 cut(s) 432, 1868
BssECI CCNNGG 4 cut(s) 105, 352, 1576, 1988
BssMI GATC 7 cut(s) 246, 642, 664, 718, 945, 1848, 2123
BssNI GRCGYC 1 cut(s) 1994
BssT1I CCWWGG 1 cut(s) 1576
Bst2UI CCWGG 2 cut(s) 1746, 1989
Bst4CI ACNGT 4 cut(s) 85, 818, 1538, 1946
Bst6I CTCTTC 2 cut(s) 224, 1911
BstACI GRCGYC 1 cut(s) 1994
BstAPI GCANNNNNTGC 1 cut(s) 2034
BstC8I GCNNGC 7 cut(s) 241, 888, 1056, 1060, 1101, 1218, 1567
BstDEI CTNAG 5 cut(s) 177, 839, 915, 1881, 1934
BstDSI CCRYGG 2 cut(s) 105, 1576
BstF5I GGATG 9 cut(s) 768, 862, 881, 1033, 1138, 1390, 1754, 1915, 2125
BstFNI CGCG 3 cut(s) 107, 658, 892
BstHHI GCGC 2 cut(s) 658, 892
BstKTI GATC 7 cut(s) 249, 645, 667, 721, 948, 1851, 2126
BstMAI GTCTC 4 cut(s) 149, 221, 586, 1919
BstMBI GATC 7 cut(s) 246, 642, 664, 718, 945, 1848, 2123
BstMCI CGRYCG 1 cut(s) 87
BstMWI GCNNNNNNNGC 6 cut(s) 107, 236, 260, 835, 1601, 2034
BstNI CCWGG 2 cut(s) 1746, 1989
BstNSI RCATGY 4 cut(s) 175, 559, 959, 1165
BstSCI CCNGG 3 cut(s) 378, 1744, 1987
BstSFI CTRYAG 2 cut(s) 1567, 1593
BstSLI GKGCMC 1 cut(s) 798
BstUI CGCG 3 cut(s) 107, 658, 892
BstV1I GCAGC 7 cut(s) 477, 1074, 1083, 1191, 1345, 1579, 1616
BstV2I GAAGAC 2 cut(s) 276, 1848
BstX2I RGATCY 2 cut(s) 718, 2123
BstYI RGATCY 2 cut(s) 718, 2123
BsuI GTATCC 1 cut(s) 417
BsuRI GGCC 2 cut(s) 386, 983
BtgI CCRYGG 2 cut(s) 105, 1576
BtsCI GGATG 9 cut(s) 768, 862, 881, 1033, 1138, 1390, 1754, 1915, 2125
BtsI GCAGTG 3 cut(s) 1211, 2035, 2040
BtsIMutI CAGTG 4 cut(s) 1211, 1951, 2035, 2040
Cac8I GCNNGC 7 cut(s) 241, 888, 1056, 1060, 1101, 1218, 1567
CciI TCATGA 1 cut(s) 942
CfoI GCGC 2 cut(s) 658, 892
Cfr10I RCCGGY 2 cut(s) 432, 1868
Cfr13I GGNCC 1 cut(s) 376
Cfr42I CCGCGG 1 cut(s) 108
CseI GACGC 3 cut(s) 236, 656, 2002
Csp6I GTAC 6 cut(s) 532, 559, 814, 843, 1165, 1980
CspAI ACCGGT 1 cut(s) 432
CviQI GTAC 6 cut(s) 532, 559, 814, 843, 1165, 1980
DdeI CTNAG 5 cut(s) 177, 839, 915, 1881, 1934
DpnI GATC 7 cut(s) 248, 644, 666, 720, 947, 1850, 2125
DpnII GATC 7 cut(s) 246, 642, 664, 718, 945, 1848, 2123
Eam1104I CTCTTC 2 cut(s) 224, 1911
EarI CTCTTC 2 cut(s) 224, 1911
Ecl136II GAGCTC 2 cut(s) 181, 1076
Eco130I CCWWGG 1 cut(s) 1576
Eco147I AGGCCT 1 cut(s) 983
Eco24I GRGCYC 3 cut(s) 183, 1078, 1974
Eco31I GGTCTC 2 cut(s) 221, 586
Eco47I GGWCC 1 cut(s) 376
Eco53kI GAGCTC 2 cut(s) 181, 1076
Eco57I CTGAAG 2 cut(s) 1437, 1515
EcoICRI GAGCTC 2 cut(s) 181, 1076
EcoRII CCWGG 2 cut(s) 1744, 1987
EcoT14I CCWWGG 1 cut(s) 1576
EcoT22I ATGCAT 1 cut(s) 806
EcoT38I GRGCYC 3 cut(s) 183, 1078, 1974
ErhI CCWWGG 1 cut(s) 1576
FalI AAGNNNNNCTT 2 cut(s) 500, 532
FaqI GGGAC 4 cut(s) 1159, 1862, 2005, 2105
FauI CCCGC 1 cut(s) 563
FauNDI CATATG 1 cut(s) 1648
FbaI TGATCA 2 cut(s) 945, 1848
FokI GGATG 9 cut(s) 775, 869, 888, 1040, 1145, 1397, 1761, 1922, 2132
FriOI GRGCYC 3 cut(s) 183, 1078, 1974
FspBI CTAG 5 cut(s) 155, 512, 1079, 1437, 1955
GlaI GCGC 2 cut(s) 657, 891
GsaI CCCAGC 2 cut(s) 202, 1377
GsuI CTGGAG 1 cut(s) 151
HaeIII GGCC 2 cut(s) 386, 983
HapII CCGG 6 cut(s) 208, 276, 379, 433, 1631, 1869
HgaI GACGC 3 cut(s) 236, 656, 2002
HhaI GCGC 2 cut(s) 658, 892
Hin1I GRCGYC 1 cut(s) 1994
Hin6I GCGC 2 cut(s) 656, 890
HinP1I GCGC 2 cut(s) 656, 890
HincII GTYRAC 1 cut(s) 1159
HindII GTYRAC 1 cut(s) 1159
HindIII AAGCTT 1 cut(s) 678
HinfI GANTC 7 cut(s) 272, 527, 1429, 1510, 1572, 1799, 2098
HpaII CCGG 6 cut(s) 208, 276, 379, 433, 1631, 1869
HphI GGTGA 6 cut(s) 298, 488, 1045, 1054, 1799, 1808
Hpy166II GTNNAC 5 cut(s) 438, 796, 1159, 1271, 2068
Hpy188III TCNNGA 8 cut(s) 47, 208, 276, 809, 943, 1079, 1631, 2090
Hpy8I GTNNAC 5 cut(s) 438, 796, 1159, 1271, 2068
Hpy99I CGWCG 3 cut(s) 230, 254, 650
HpyCH4III ACNGT 4 cut(s) 85, 818, 1538, 1946
HpyCH4IV ACGT 1 cut(s) 149
HpyF10VI GCNNNNNNNGC 6 cut(s) 107, 236, 260, 835, 1601, 2034
HpyF3I CTNAG 5 cut(s) 177, 839, 915, 1881, 1934
HpySE526I ACGT 1 cut(s) 149
Hsp92I GRCGYC 1 cut(s) 1994
HspAI GCGC 2 cut(s) 656, 890
Kpn2I TCCGGA 3 cut(s) 207, 275, 1630
Ksp22I TGATCA 2 cut(s) 945, 1848
KspI CCGCGG 1 cut(s) 108
Kzo9I GATC 7 cut(s) 246, 642, 664, 718, 945, 1848, 2123
LmnI GCTCC 6 cut(s) 13, 170, 207, 1073, 1291, 1620
Lsp1109I GCAGC 7 cut(s) 477, 1074, 1083, 1191, 1345, 1579, 1616
LweI GCATC 6 cut(s) 791, 1202, 1296, 1321, 1509, 1739
MaeI CTAG 5 cut(s) 155, 512, 1079, 1437, 1955
MaeII ACGT 1 cut(s) 149
MaeIII GTNAC 5 cut(s) 150, 611, 730, 968, 1033
MalI GATC 7 cut(s) 248, 644, 666, 720, 947, 1850, 2125
MbiI CCGCTC 1 cut(s) 674
MboI GATC 7 cut(s) 246, 642, 664, 718, 945, 1848, 2123
MfeI CAATTG 1 cut(s) 1959
MflI RGATCY 2 cut(s) 718, 2123
MhlI GDGCHC 4 cut(s) 183, 798, 1078, 1974
MluCI AATT 9 cut(s) 340, 896, 1066, 1122, 1704, 1773, 1784, 1959, 2111
MlyI GAGTC 1 cut(s) 266
MmeI TCCRAC 2 cut(s) 401, 914
Mph1103I ATGCAT 1 cut(s) 806
MroI TCCGGA 3 cut(s) 207, 275, 1630
MroXI GAANNNNTTC 2 cut(s) 926, 2102
MseI TTAA 4 cut(s) 741, 1404, 1626, 2115
MslI CAYNNNNRTG 2 cut(s) 548, 1299
MspA1I CMGCKG 2 cut(s) 107, 490
MspI CCGG 6 cut(s) 208, 276, 379, 433, 1631, 1869
MspR9I CCNGG 3 cut(s) 380, 1746, 1989
MunI CAATTG 1 cut(s) 1959
Mva1269I GAATGC 3 cut(s) 230, 804, 1008
MvaI CCWGG 2 cut(s) 1746, 1989
MvnI CGCG 3 cut(s) 107, 658, 892
MwoI GCNNNNNNNGC 6 cut(s) 107, 236, 260, 835, 1601, 2034
NciI CCSGG 1 cut(s) 380
NcoI CCATGG 1 cut(s) 1576
NdeI CATATG 1 cut(s) 1648
NdeII GATC 7 cut(s) 246, 642, 664, 718, 945, 1848, 2123
NlaIV GGNNCC 2 cut(s) 720, 1564
NmuCI GTSAC 3 cut(s) 611, 968, 1033
NsiI ATGCAT 1 cut(s) 806
NspI RCATGY 4 cut(s) 175, 559, 959, 1165
PagI TCATGA 1 cut(s) 942
PceI AGGCCT 1 cut(s) 983
PciI ACATGT 3 cut(s) 555, 955, 1161
PctI GAATGC 3 cut(s) 230, 804, 1008
PdmI GAANNNNTTC 2 cut(s) 926, 2102
PfeI GAWTC 6 cut(s) 527, 1429, 1510, 1572, 1799, 2098
PfoI TCCNGGA 1 cut(s) 1744
PinAI ACCGGT 1 cut(s) 432
PleI GAGTC 1 cut(s) 266
PpsI GAGTC 1 cut(s) 266
PscI ACATGT 3 cut(s) 555, 955, 1161
Psp124BI GAGCTC 2 cut(s) 183, 1078
Psp6I CCWGG 2 cut(s) 1744, 1987
PspFI CCCAGC 2 cut(s) 198, 1373
PspGI CCWGG 2 cut(s) 1744, 1987
PspN4I GGNNCC 2 cut(s) 720, 1564
PspPI GGNCC 1 cut(s) 376
PstI CTGCAG 2 cut(s) 1571, 1597
PsuI RGATCY 2 cut(s) 718, 2123
PvuII CAGCTG 1 cut(s) 490
RsaI GTAC 6 cut(s) 533, 560, 815, 844, 1166, 1981
RsaNI GTAC 6 cut(s) 532, 559, 814, 843, 1165, 1980
RseI CAYNNNNRTG 2 cut(s) 548, 1299
SacI GAGCTC 2 cut(s) 183, 1078
SacII CCGCGG 1 cut(s) 108
SaqAI TTAA 4 cut(s) 741, 1404, 1626, 2115
Sau3AI GATC 7 cut(s) 246, 642, 664, 718, 945, 1848, 2123
Sau96I GGNCC 1 cut(s) 376
SchI GAGTC 1 cut(s) 266
ScrFI CCNGG 3 cut(s) 380, 1746, 1989
SduI GDGCHC 4 cut(s) 183, 798, 1078, 1974
SfaNI GCATC 6 cut(s) 791, 1202, 1296, 1321, 1509, 1739
SfcI CTRYAG 2 cut(s) 1567, 1593
Sfr303I CCGCGG 1 cut(s) 108
SgrBI CCGCGG 1 cut(s) 108
SinI GGWCC 1 cut(s) 376
SmiMI CAYNNNNRTG 2 cut(s) 548, 1299
SmlI CTYRAG 4 cut(s) 182, 675, 1010, 1586
SmoI CTYRAG 4 cut(s) 182, 675, 1010, 1586
Sse9I AATT 9 cut(s) 340, 896, 1066, 1122, 1704, 1773, 1784, 1959, 2111
SseBI AGGCCT 1 cut(s) 983
SspMI CTAG 5 cut(s) 155, 512, 1079, 1437, 1955
SstI GAGCTC 2 cut(s) 183, 1078
StuI AGGCCT 1 cut(s) 983
StyD4I CCNGG 3 cut(s) 378, 1744, 1987
StyI CCWWGG 1 cut(s) 1576
TaaI ACNGT 4 cut(s) 85, 818, 1538, 1946
TaiI ACGT 1 cut(s) 152
TaqI TCGA 6 cut(s) 225, 563, 645, 903, 1486, 1767
TasI AATT 9 cut(s) 340, 896, 1066, 1122, 1704, 1773, 1784, 1959, 2111
TatI WGTACW 3 cut(s) 558, 813, 1979
TauI GCSGC 4 cut(s) 104, 107, 110, 1179
TfiI GAWTC 6 cut(s) 527, 1429, 1510, 1572, 1799, 2098
Tru1I TTAA 4 cut(s) 741, 1404, 1626, 2115
Tru9I TTAA 4 cut(s) 741, 1404, 1626, 2115
TscAI CASTG 4 cut(s) 1218, 1951, 2035, 2047
TseFI GTSAC 3 cut(s) 611, 968, 1033
TseI GCWGC 8 cut(s) 5, 490, 1062, 1096, 1179, 1358, 1592, 1604
Tsp45I GTSAC 3 cut(s) 611, 968, 1033
TspDTI ATGAA 8 cut(s) 566, 1401, 1502, 1541, 1653, 1791, 1797, 1926
TspRI CASTG 4 cut(s) 1218, 1951, 2035, 2047
VneI GTGCAC 1 cut(s) 794
VpaK11BI GGWCC 1 cut(s) 376
XapI RAATTY 2 cut(s) 896, 1784
XbaI TCTAGA 1 cut(s) 1078
XceI RCATGY 4 cut(s) 175, 559, 959, 1165
XmnI GAANNNNTTC 2 cut(s) 926, 2102
XspI CTAG 5 cut(s) 155, 512, 1079, 1437, 1955
Zsp2I ATGCAT 1 cut(s) 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.