Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8347093.1

Orthogroup ID

OG0005071

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1028

Gene Structure 1028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8347093.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1028 bp

ggggcagctcaggaagggaagcaggtccatgggcatgtgttgaagcatggagttggctctgatgcgtttgtgcacacttctctgatcaacatgtatgcgaaaagtggtgaattggataatgcaaggttggtttttgataaaagtcatctgagagatgcggtttcgtttactgctttgattactggctatgtttcaaggggttgtatggatgatgcccgcagcttgtttgatgaaattttagtaagagatgcggtgtcttggaatgctatgatttcagggtatgctcagagcggcaggtttgaggaagcgttggctttgttttcggatatgcgaaaagcaaatgtggtaccgaatgagagtactatgcttactgtgctttctgcttgtgctcagtcggggtcacttgaattgggaaaatgggtcgcttcttggattgaagaccagggacttggatcgaatgttaggcttgttaatgcacttattgatatgtactcaaagtgtggtgctttggacacagctagaggtttatttgatggtatgcaacagagggatgtgatctcatggaatgttatgattggtggttatacacataagagccagtacaaggaagccttggcactctttcggttaatgctacgttcaaatgcagagcctaatgatgtcacattcttgggcattcttccggcttgtgctcatttgggagctcttgaccttggcaaatggattcatgtttatatagataagaagctgcagtgtttgaccaatacatctctccagaccagtctcatagacatgtatgcaaaatgcggaaacattgaggcagcaaaacaagtctttgatggtatggaagccaaaagcttggcctcttggaatgcaatgataactggcttagcaatgcatgggaaagcaaatgcagcacttgagcttttctcgaagatggctgatgaaggattcaaaccagatgatatcacatttgtgggagttttatcggcttgcaaccatggtggtctagtagaccttggacgcca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

342

Amino Acids

37.11

Weight (kDa)

5.93

Isoelectric Point (pI)

36.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08070 AT1G08070
fragaria_vesca	FvH4_1g03710 FvH4_1g04070
malus_domestica	MD02G1039500.v1.1 MD15G1176200.v1.1 MD15G1180300.v1.1
prunus_persica	Prupe.7G236200_v2.0.a1 Prupe.7G239300_v2.0.a1
pyrus_communis	pycom02g03280 pycom15g15800 pycom15g16170 pycom15g16180
rosa_chinensis	RchiOBHm_Chr2g0089161 RchiOBHm_Chr2g0089561
rosa_laevigata	RLG00000015999 RLG00000016040
rosa_multiflora	Rmu_co8347093.1_g000001 Rmu_sc0006193.1_g000005 Rmu_sc0008909.1_g000002 Rmu_sc0023591.1_g000001
rosa_rugosa	Rorug01G0488000 Rorug02G0001500
rosa_samantha	Rh2AG043600 Rh2BG042300 Rh2CG043600 Rh2CG047500 Rh2DG042700
rosa_wichuraiana	Rw2G003400 Rw2G003590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	13, 285
Acc65I	GGTACC	1 cut(s)	346
AccB1I	GGYRCC	1 cut(s)	346
AccBSI	CCGCTC	1 cut(s)	291
AccI	GTMKAC	1 cut(s)	1014
AciI	CCGC	5 cut(s)	158, 217, 251, 291, 807
AclWI	GGATC	1 cut(s)	460
AcsI	RAATTY	1 cut(s)	234
AcyI	GRCGYC	1 cut(s)	1024
AfaI	GTAC	4 cut(s)	348, 361, 491, 602
AfiI	CCNNNNNNNGG	1 cut(s)	604
AflIII	ACRYGT	2 cut(s)	90, 792
AgsI	TTSAA	6 cut(s)	43, 195, 407, 437, 642, 955
AjnI	CCWGG	1 cut(s)	441
AleI	CACNNNNGTG	1 cut(s)	974
AluBI	AGCT	7 cut(s)	8, 222, 518, 704, 748, 858, 925
AluI	AGCT	7 cut(s)	8, 222, 518, 704, 748, 858, 925
Alw21I	GWGCWC	4 cut(s)	75, 391, 694, 706
Alw26I	GTCTC	1 cut(s)	788
Alw44I	GTGCAC	1 cut(s)	71
AlwI	GGATC	1 cut(s)	460
AoxI	GGCC	1 cut(s)	861
ApaLI	GTGCAC	1 cut(s)	71
ApeKI	GCWGC	5 cut(s)	5, 219, 748, 821, 914
ApoI	RAATTY	1 cut(s)	234
Asp718I	GGTACC	1 cut(s)	346
AspS9I	GGNCC	1 cut(s)	25
AsuHPI	GGTGA	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	25
BaeGI	GKGCMC	1 cut(s)	75
BanI	GGYRCC	1 cut(s)	346
BanII	GRGCYC	1 cut(s)	706
BbsI	GAAGAC	1 cut(s)	444
Bbv12I	GWGCWC	4 cut(s)	75, 391, 694, 706
BbvI	GCAGC	5 cut(s)	17, 231, 735, 833, 926
BccI	CCATC	3 cut(s)	527, 833, 931
BciT130I	CCWGG	1 cut(s)	443
BclI	TGATCA	1 cut(s)	84
BcoDI	GTCTC	1 cut(s)	788
BfaI	CTAG	2 cut(s)	519, 1010
BfmI	CTRYAG	1 cut(s)	749
BfuAI	ACCTGC	2 cut(s)	13, 285
BisI	GCNGC	6 cut(s)	6, 220, 292, 749, 822, 915
BlpI	GCTNAGC	1 cut(s)	889
BlsI	GCNGC	6 cut(s)	7, 221, 293, 750, 823, 916
BmcAI	AGTACT	1 cut(s)	361
Bme1390I	CCNGG	1 cut(s)	443
Bme18I	GGWCC	1 cut(s)	25
BmgT120I	GGNCC	1 cut(s)	25
BmiI	GGNNCC	1 cut(s)	348
BmrFI	CCNGG	1 cut(s)	443
BmsI	GCATC	4 cut(s)	52, 145, 202, 238
BpiI	GAAGAC	1 cut(s)	444
BplI	GAGNNNNNCTC	2 cut(s)	914, 946
BpmI	CTGGAG	1 cut(s)	758
Bpu10I	CCTNAGC	1 cut(s)	9
Bpu1102I	GCTNAGC	1 cut(s)	889
BpuEI	CTTGAG	1 cut(s)	941
BsaHI	GRCGYC	1 cut(s)	1024
BsaJI	CCNNGG	6 cut(s)	28, 442, 612, 712, 1000, 1018
Bsc4I	CCNNNNNNNGG	1 cut(s)	604
Bse1I	ACTGG	4 cut(s)	187, 598, 780, 889
Bse3DI	GCAATG	2 cut(s)	882, 900
BseBI	CCWGG	1 cut(s)	443
BseDI	CCNNGG	6 cut(s)	28, 442, 612, 712, 1000, 1018
BseGI	GGATG	2 cut(s)	214, 556
BseLI	CCNNNNNNNGG	1 cut(s)	604
BseMI	GCAATG	2 cut(s)	882, 900
BseMII	CTCAG	4 cut(s)	23, 140, 299, 404
BseNI	ACTGG	4 cut(s)	187, 598, 780, 889
BseSI	GKGCMC	1 cut(s)	75
BseXI	GCAGC	5 cut(s)	17, 231, 735, 833, 926
BshFI	GGCC	1 cut(s)	863
BshNI	GGYRCC	1 cut(s)	346
BsiHKAI	GWGCWC	4 cut(s)	75, 391, 694, 706
BsiSI	CCGG	1 cut(s)	683
BslFI	GGGAC	1 cut(s)	459
BslI	CCNNNNNNNGG	1 cut(s)	604
BsmAI	GTCTC	1 cut(s)	788
BsmFI	GGGAC	1 cut(s)	459
BsmI	GAATGC	3 cut(s)	268, 675, 877
BsnI	GGCC	1 cut(s)	863
Bsp1286I	GDGCHC	4 cut(s)	75, 391, 694, 706
Bsp143I	GATC	3 cut(s)	84, 452, 555
Bsp1720I	GCTNAGC	1 cut(s)	889
Bsp19I	CCATGG	2 cut(s)	28, 1000
BspACI	CCGC	5 cut(s)	158, 217, 251, 291, 807
BspANI	GGCC	1 cut(s)	863
BspCNI	CTCAG	4 cut(s)	22, 141, 298, 403
BspLI	GGNNCC	1 cut(s)	348
BspMAI	CTGCAG	1 cut(s)	753
BspMI	ACCTGC	2 cut(s)	13, 285
BspPI	GGATC	1 cut(s)	460
BspT107I	GGYRCC	1 cut(s)	346
BsrBI	CCGCTC	1 cut(s)	291
BsrDI	GCAATG	2 cut(s)	882, 900
BsrI	ACTGG	4 cut(s)	187, 598, 780, 889
BssECI	CCNNGG	6 cut(s)	28, 442, 612, 712, 1000, 1018
BssMI	GATC	3 cut(s)	84, 452, 555
BssNI	GRCGYC	1 cut(s)	1024
BssT1I	CCWWGG	5 cut(s)	28, 612, 712, 1000, 1018
Bst2UI	CCWGG	1 cut(s)	443
Bst4CI	ACNGT	1 cut(s)	373
BstACI	GRCGYC	1 cut(s)	1024
BstC8I	GCNNGC	2 cut(s)	217, 994
BstDEI	CTNAG	5 cut(s)	9, 149, 285, 390, 889
BstDSI	CCRYGG	2 cut(s)	28, 1000
BstF5I	GGATG	2 cut(s)	214, 556
BstKTI	GATC	3 cut(s)	87, 455, 558
BstMAI	GTCTC	1 cut(s)	788
BstMBI	GATC	3 cut(s)	84, 452, 555
BstMWI	GCNNNNNNNGC	2 cut(s)	373, 914
BstNI	CCWGG	1 cut(s)	443
BstNSI	RCATGY	3 cut(s)	38, 94, 796
BstSCI	CCNGG	1 cut(s)	441
BstSFI	CTRYAG	1 cut(s)	749
BstSLI	GKGCMC	1 cut(s)	75
BstV1I	GCAGC	5 cut(s)	17, 231, 735, 833, 926
BstV2I	GAAGAC	1 cut(s)	444
BstXI	CCANNNNNNTGG	2 cut(s)	449, 859
BsuRI	GGCC	1 cut(s)	863
BtgI	CCRYGG	2 cut(s)	28, 1000
BtsCI	GGATG	2 cut(s)	214, 556
BtsI	GCAGTG	1 cut(s)	758
BtsIMutI	CAGTG	1 cut(s)	758
BveI	ACCTGC	2 cut(s)	13, 285
Cac8I	GCNNGC	2 cut(s)	217, 994
Cfr13I	GGNCC	1 cut(s)	25
Csp6I	GTAC	4 cut(s)	347, 360, 490, 601
CspCI	CAANNNNNGTGG	2 cut(s)	985, 1020
CviAII	CATG	9 cut(s)	29, 35, 47, 91, 561, 728, 793, 899, 1001
CviQI	GTAC	4 cut(s)	347, 360, 490, 601
DdeI	CTNAG	5 cut(s)	9, 149, 285, 390, 889
DpnI	GATC	3 cut(s)	86, 454, 557
DpnII	GATC	3 cut(s)	84, 452, 555
Ecl136II	GAGCTC	1 cut(s)	704
Eco130I	CCWWGG	5 cut(s)	28, 612, 712, 1000, 1018
Eco24I	GRGCYC	1 cut(s)	706
Eco32I	GATATC	1 cut(s)	967
Eco47I	GGWCC	1 cut(s)	25
Eco53kI	GAGCTC	1 cut(s)	704
EcoICRI	GAGCTC	1 cut(s)	704
EcoRII	CCWGG	1 cut(s)	441
EcoRV	GATATC	1 cut(s)	967
EcoT14I	CCWWGG	5 cut(s)	28, 612, 712, 1000, 1018
EcoT22I	ATGCAT	1 cut(s)	900
EcoT38I	GRGCYC	1 cut(s)	706
ErhI	CCWWGG	5 cut(s)	28, 612, 712, 1000, 1018
FaeI	CATG	9 cut(s)	32, 38, 50, 94, 564, 731, 796, 902, 1004
FalI	AAGNNNNNCTT	2 cut(s)	596, 628
FaqI	GGGAC	1 cut(s)	459
FatI	CATG	9 cut(s)	28, 34, 46, 90, 560, 727, 792, 898, 1000
FauI	CCCGC	1 cut(s)	224
FbaI	TGATCA	1 cut(s)	84
FblI	GTMKAC	1 cut(s)	1014
Fnu4HI	GCNGC	6 cut(s)	6, 220, 292, 749, 822, 915
FokI	GGATG	2 cut(s)	221, 563
FriOI	GRGCYC	1 cut(s)	706
Fsp4HI	GCNGC	6 cut(s)	6, 220, 292, 749, 822, 915
FspBI	CTAG	2 cut(s)	519, 1010
GluI	GCNGC	6 cut(s)	6, 220, 292, 749, 822, 915
GsuI	CTGGAG	1 cut(s)	758
HaeIII	GGCC	1 cut(s)	863
HapII	CCGG	1 cut(s)	683
Hin1I	GRCGYC	1 cut(s)	1024
Hin1II	CATG	9 cut(s)	32, 38, 50, 94, 564, 731, 796, 902, 1004
HindIII	AAGCTT	1 cut(s)	856
HinfI	GANTC	2 cut(s)	724, 951
HpaII	CCGG	1 cut(s)	683
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	3 cut(s)	73, 168, 1015
Hpy188I	TCNGA	5 cut(s)	61, 84, 150, 288, 325
Hpy188III	TCNNGA	4 cut(s)	11, 707, 775, 931
Hpy8I	GTNNAC	3 cut(s)	73, 168, 1015
HpyAV	CCTTC	2 cut(s)	8, 941
HpyCH4III	ACNGT	1 cut(s)	373
HpyCH4IV	ACGT	1 cut(s)	637
HpyF10VI	GCNNNNNNNGC	2 cut(s)	373, 914
HpyF3I	CTNAG	5 cut(s)	9, 149, 285, 390, 889
HpySE526I	ACGT	1 cut(s)	637
Hsp92I	GRCGYC	1 cut(s)	1024
Hsp92II	CATG	9 cut(s)	32, 38, 50, 94, 564, 731, 796, 902, 1004
KpnI	GGTACC	1 cut(s)	350
Ksp22I	TGATCA	1 cut(s)	84
Kzo9I	GATC	3 cut(s)	84, 452, 555
LmnI	GCTCC	1 cut(s)	701
Lsp1109I	GCAGC	5 cut(s)	17, 231, 735, 833, 926
LweI	GCATC	4 cut(s)	52, 145, 202, 238
MaeI	CTAG	2 cut(s)	519, 1010
MaeII	ACGT	1 cut(s)	637
MaeIII	GTNAC	2 cut(s)	399, 661
MalI	GATC	3 cut(s)	86, 454, 557
MbiI	CCGCTC	1 cut(s)	291
MboI	GATC	3 cut(s)	84, 452, 555
MboII	GAAGA	3 cut(s)	449, 671, 946
MhlI	GDGCHC	4 cut(s)	75, 391, 694, 706
MluCI	AATT	3 cut(s)	110, 234, 407
MnlI	CCTC	5 cut(s)	295, 515, 540, 811, 874
Mph1103I	ATGCAT	1 cut(s)	900
MseI	TTAA	2 cut(s)	471, 629
MslI	CAYNNNNRTG	3 cut(s)	33, 791, 974
MspI	CCGG	1 cut(s)	683
MspR9I	CCNGG	1 cut(s)	443
Mva1269I	GAATGC	3 cut(s)	268, 675, 877
MvaI	CCWGG	1 cut(s)	443
MwoI	GCNNNNNNNGC	2 cut(s)	373, 914
NcoI	CCATGG	2 cut(s)	28, 1000
NdeII	GATC	3 cut(s)	84, 452, 555
NlaIII	CATG	9 cut(s)	32, 38, 50, 94, 564, 731, 796, 902, 1004
NlaIV	GGNNCC	1 cut(s)	348
NmuCI	GTSAC	2 cut(s)	399, 661
NsiI	ATGCAT	1 cut(s)	900
NspI	RCATGY	3 cut(s)	38, 94, 796
OliI	CACNNNNGTG	1 cut(s)	974
PciI	ACATGT	2 cut(s)	90, 792
PctI	GAATGC	3 cut(s)	268, 675, 877
PfeI	GAWTC	2 cut(s)	724, 951
PkrI	GCNGC	6 cut(s)	7, 221, 293, 750, 823, 916
PscI	ACATGT	2 cut(s)	90, 792
Psp124BI	GAGCTC	1 cut(s)	706
Psp6I	CCWGG	1 cut(s)	441
PspGI	CCWGG	1 cut(s)	441
PspN4I	GGNNCC	1 cut(s)	348
PspPI	GGNCC	1 cut(s)	25
PstI	CTGCAG	1 cut(s)	753
RsaI	GTAC	4 cut(s)	348, 361, 491, 602
RsaNI	GTAC	4 cut(s)	347, 360, 490, 601
RseI	CAYNNNNRTG	3 cut(s)	33, 791, 974
SacI	GAGCTC	1 cut(s)	706
SaqAI	TTAA	2 cut(s)	471, 629
SatI	GCNGC	6 cut(s)	6, 220, 292, 749, 822, 915
Sau3AI	GATC	3 cut(s)	84, 452, 555
Sau96I	GGNCC	1 cut(s)	25
ScaI	AGTACT	1 cut(s)	361
ScrFI	CCNGG	1 cut(s)	443
SduI	GDGCHC	4 cut(s)	75, 391, 694, 706
SfaNI	GCATC	4 cut(s)	52, 145, 202, 238
SfcI	CTRYAG	1 cut(s)	749
SinI	GGWCC	1 cut(s)	25
SmiMI	CAYNNNNRTG	3 cut(s)	33, 791, 974
SmlI	CTYRAG	1 cut(s)	920
SmoI	CTYRAG	1 cut(s)	920
Sse9I	AATT	3 cut(s)	110, 234, 407
SsiI	CCGC	5 cut(s)	158, 217, 251, 291, 807
SspMI	CTAG	2 cut(s)	519, 1010
SstI	GAGCTC	1 cut(s)	706
StyD4I	CCNGG	1 cut(s)	441
StyI	CCWWGG	5 cut(s)	28, 612, 712, 1000, 1018
TaaI	ACNGT	1 cut(s)	373
TaiI	ACGT	1 cut(s)	640
TaqI	TCGA	2 cut(s)	455, 932
TasI	AATT	3 cut(s)	110, 234, 407
TatI	WGTACW	3 cut(s)	359, 489, 600
TauI	GCSGC	1 cut(s)	294
TfiI	GAWTC	2 cut(s)	724, 951
Tru1I	TTAA	2 cut(s)	471, 629
Tru9I	TTAA	2 cut(s)	471, 629
TscAI	CASTG	1 cut(s)	758
TseFI	GTSAC	2 cut(s)	399, 661
TseI	GCWGC	5 cut(s)	5, 219, 748, 821, 914
Tsp45I	GTSAC	2 cut(s)	399, 661
TspDTI	ATGAA	3 cut(s)	246, 716, 960
TspRI	CASTG	1 cut(s)	758
VneI	GTGCAC	1 cut(s)	71
VpaK11BI	GGWCC	1 cut(s)	25
XapI	RAATTY	1 cut(s)	234
XceI	RCATGY	3 cut(s)	38, 94, 796
XmiI	GTMKAC	1 cut(s)	1014
XspI	CTAG	2 cut(s)	519, 1010
ZrmI	AGTACT	1 cut(s)	361
Zsp2I	ATGCAT	1 cut(s)	900

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.