Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0005071

Physical Location & Seq

Genomic Coordinates Forward (+)

1994055 .. 1995195

Gene Structure 1141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g03710.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGCGTTTTCGCTTTGTCTTCGCCTTCATTACTCAACACTCCACCCTCCACACTTGACACTCCCCATCCTTCCCAACTCCGATCCTCCCGACAACCTCCTCACTCTCCTCTCCAAATGCAAATCCATCCAAACCCTCAAACAAGCCCACGCCCACTTCGCTCTCTCCAAGCTCATCCACTTCTGCGCCGTCTCGCAACACGGCGACCTCTCATATGCCCTCTCCGTCTTCAACTGCGTCGAGAATCCCAATCCGATTATGTGGAACACAATCATCCGTGGCTATTCCTCGACCTCCAACCCATTACAATCCCTCTACTCGGACTTGACTCTGATGCTTTTGTTCACACTTGCTTTGATCAACATGTATGCCAAAAGTGGTGAGTTGGATAATGCGAGGTTGGTTTTCGATAAGAGTGATATGAGAGATGCGGTTTCGTTTACTGCTTTGATTACCGGGTATGTCTCGAGGGGTTACATGGACGATGCGTGCAGCTTGTTTGATGAAATTTTGATAAGAGATGCTGTGTGTTGGAATGCTATGATTTCGGGGTATGTGCAGAGCGGAAGATTTGGTGAAGCATTGGGGTTGTTTGAGGAGATGCGAATTGCAAATGTGCTACCGAATGAGAGCACTATGGTTAGTGTGCTTTCTGCTTGCGCTCGGTCAGGAGAGATTGAAGTGGGGAAATGGGTTGCGGGTTGGATTGAGGGCCAGGGACTTGGGGGGAATGTTAGGCTTGTTAATGCGCTTGTTGATATGTGCTCAAAGTGTGGTGCTTTGGATGAAGCTAGAAGCTTATTTGATGGTATGCAAATGAGGGATGTGATTTCGTGGAATGTGATGATTGGTGGTTCTACGCATGAGGGTCGGTACAAGGAAGCATTGGAGATGTTTAGGTTGATGCTGCGTTCAAATGTAGAGCCTAATGATGTCACGTTTTTGGGGATTCTTCCCGCTTGTGCTCAATTGGGAGCTCGTGACCTTGGCAAATGGATTCACTGCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

337

Amino Acids

37.18

Weight (kDa)

5.84

Isoelectric Point (pI)

37.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	174 - 222	1.5e-12	PPR repeat family
PPR_1	PF12854	174 - 202	1e-05	PPR repeat
PPR	PF01535	176 - 202	3.1e-09	PPR repeat
PPR_2	PF13041	274 - 322	4.3e-11	PPR repeat family
PPR	PF01535	277 - 307	1.6e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08070 AT1G08070
fragaria_vesca	FvH4_1g03710 FvH4_1g04070
malus_domestica	MD02G1039500.v1.1 MD15G1176200.v1.1 MD15G1180300.v1.1
prunus_persica	Prupe.7G236200_v2.0.a1 Prupe.7G239300_v2.0.a1
pyrus_communis	pycom02g03280 pycom15g15800 pycom15g16170 pycom15g16180
rosa_chinensis	RchiOBHm_Chr2g0089161 RchiOBHm_Chr2g0089561
rosa_laevigata	RLG00000015999 RLG00000016040
rosa_multiflora	Rmu_co8347093.1_g000001 Rmu_sc0006193.1_g000005 Rmu_sc0008909.1_g000002 Rmu_sc0023591.1_g000001
rosa_rugosa	Rorug01G0488000 Rorug02G0001500
rosa_samantha	Rh2AG043600 Rh2BG042300 Rh2CG043600 Rh2CG047500 Rh2DG042700
rosa_wichuraiana	Rw2G003400 Rw2G003590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	564
AciI	CCGC	5 cut(s)	431, 564, 698, 957, 1006
AclWI	GGATC	1 cut(s)	77
AcsI	RAATTY	1 cut(s)	507
AfaI	GTAC	1 cut(s)	875
AfiI	CCNNNNNNNGG	1 cut(s)	319
AflIII	ACRYGT	1 cut(s)	363
AgsI	TTSAA	3 cut(s)	232, 680, 915
AjnI	CCWGG	1 cut(s)	714
AluBI	AGCT	5 cut(s)	172, 495, 791, 798, 977
AluI	AGCT	5 cut(s)	172, 495, 791, 798, 977
Alw21I	GWGCWC	4 cut(s)	635, 767, 967, 979
Alw26I	GTCTC	2 cut(s)	196, 469
AlwI	GGATC	1 cut(s)	77
Ama87I	CYCGRG	1 cut(s)	466
AoxI	GGCC	1 cut(s)	712
ApeKI	GCWGC	2 cut(s)	492, 907
ApoI	RAATTY	1 cut(s)	507
AspLEI	GCGC	3 cut(s)	188, 662, 751
AspS9I	GGNCC	1 cut(s)	712
AsuC2I	CCSGG	1 cut(s)	457
AsuHPI	GGTGA	2 cut(s)	392, 587
AvaI	CYCGRG	1 cut(s)	466
BanII	GRGCYC	1 cut(s)	979
BauI	CACGAG	1 cut(s)	978
BbsI	GAAGAC	2 cut(s)	11, 220
Bbv12I	GWGCWC	4 cut(s)	635, 767, 967, 979
BbvI	GCAGC	2 cut(s)	504, 894
BccI	CCATC	3 cut(s)	74, 134, 800
BceAI	ACGGC	2 cut(s)	173, 217
BcgI	CGANNNNNNTGC	2 cut(s)	851, 885
BciT130I	CCWGG	1 cut(s)	716
BclI	TGATCA	1 cut(s)	357
BcnI	CCSGG	1 cut(s)	457
BcoDI	GTCTC	2 cut(s)	196, 469
BfaI	CTAG	1 cut(s)	792
BisI	GCNGC	3 cut(s)	493, 908, 1006
BlsI	GCNGC	3 cut(s)	494, 909, 1007
Bme1390I	CCNGG	2 cut(s)	457, 716
BmeT110I	CYCGRG	1 cut(s)	466
BmgT120I	GGNCC	1 cut(s)	712
BmrFI	CCNGG	2 cut(s)	457, 716
BmsI	GCATC	6 cut(s)	324, 418, 475, 511, 591, 894
BpiI	GAAGAC	2 cut(s)	11, 220
BpuMI	CCSGG	1 cut(s)	457
BsaJI	CCNNGG	3 cut(s)	277, 715, 985
Bsc4I	CCNNNNNNNGG	1 cut(s)	319
BseBI	CCWGG	1 cut(s)	716
BseDI	CCNNGG	3 cut(s)	277, 715, 985
BseGI	GGATG	6 cut(s)	66, 126, 174, 273, 790, 829
BseLI	CCNNNNNNNGG	1 cut(s)	319
BseRI	GAGGAG	3 cut(s)	89, 98, 611
BseXI	GCAGC	2 cut(s)	504, 894
BsgI	GTGCAG	2 cut(s)	511, 578
BshFI	GGCC	1 cut(s)	714
BsiHKAI	GWGCWC	4 cut(s)	635, 767, 967, 979
BsiHKCI	CYCGRG	1 cut(s)	466
BsiSI	CCGG	1 cut(s)	456
BslFI	GGGAC	1 cut(s)	732
BslI	CCNNNNNNNGG	1 cut(s)	319
BsmAI	GTCTC	2 cut(s)	196, 469
BsmBI	CGTCTC	1 cut(s)	196
BsmFI	GGGAC	1 cut(s)	732
BsmI	GAATGC	1 cut(s)	541
BsnI	GGCC	1 cut(s)	714
BsoBI	CYCGRG	1 cut(s)	466
Bsp1286I	GDGCHC	4 cut(s)	635, 767, 967, 979
Bsp143I	GATC	2 cut(s)	82, 357
BspACI	CCGC	5 cut(s)	431, 564, 698, 957, 1006
BspANI	GGCC	1 cut(s)	714
BspPI	GGATC	1 cut(s)	77
BsrBI	CCGCTC	1 cut(s)	564
BssECI	CCNNGG	3 cut(s)	277, 715, 985
BssMI	GATC	2 cut(s)	82, 357
BssSI	CACGAG	1 cut(s)	978
BssT1I	CCWWGG	1 cut(s)	985
Bst2BI	CACGAG	1 cut(s)	978
Bst2UI	CCWGG	1 cut(s)	716
BstC8I	GCNNGC	2 cut(s)	490, 658
BstDSI	CCRYGG	1 cut(s)	277
BstF5I	GGATG	6 cut(s)	66, 126, 174, 273, 790, 829
BstHHI	GCGC	3 cut(s)	188, 662, 751
BstKTI	GATC	2 cut(s)	85, 360
BstMAI	GTCTC	2 cut(s)	196, 469
BstMBI	GATC	2 cut(s)	82, 357
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNI	CCWGG	1 cut(s)	716
BstNSI	RCATGY	1 cut(s)	367
BstSCI	CCNGG	2 cut(s)	455, 714
BstV1I	GCAGC	2 cut(s)	504, 894
BstV2I	GAAGAC	2 cut(s)	11, 220
BstXI	CCANNNNNNTGG	1 cut(s)	722
BsuRI	GGCC	1 cut(s)	714
BtgI	CCRYGG	1 cut(s)	277
BtsCI	GGATG	6 cut(s)	66, 126, 174, 273, 790, 829
BtsI	GCAGTG	1 cut(s)	1000
BtsIMutI	CAGTG	1 cut(s)	1000
Cac8I	GCNNGC	2 cut(s)	490, 658
CfoI	GCGC	3 cut(s)	188, 662, 751
Cfr13I	GGNCC	1 cut(s)	712
CseI	GACGC	1 cut(s)	226
Csp6I	GTAC	1 cut(s)	874
CviAII	CATG	3 cut(s)	364, 478, 863
CviQI	GTAC	1 cut(s)	874
DpnI	GATC	2 cut(s)	84, 359
DpnII	GATC	2 cut(s)	82, 357
Ecl136II	GAGCTC	1 cut(s)	977
Eco130I	CCWWGG	1 cut(s)	985
Eco24I	GRGCYC	1 cut(s)	979
Eco53kI	GAGCTC	1 cut(s)	977
Eco88I	CYCGRG	1 cut(s)	466
EcoICRI	GAGCTC	1 cut(s)	977
EcoRII	CCWGG	1 cut(s)	714
EcoT14I	CCWWGG	1 cut(s)	985
EcoT38I	GRGCYC	1 cut(s)	979
ErhI	CCWWGG	1 cut(s)	985
Esp3I	CGTCTC	1 cut(s)	196
FaeI	CATG	3 cut(s)	367, 481, 866
FaqI	GGGAC	1 cut(s)	732
FatI	CATG	3 cut(s)	363, 477, 862
FauI	CCCGC	2 cut(s)	691, 964
FauNDI	CATATG	1 cut(s)	214
FbaI	TGATCA	1 cut(s)	357
Fnu4HI	GCNGC	3 cut(s)	493, 908, 1006
FokI	GGATG	6 cut(s)	53, 113, 161, 260, 797, 836
FriOI	GRGCYC	1 cut(s)	979
Fsp4HI	GCNGC	3 cut(s)	493, 908, 1006
FspBI	CTAG	1 cut(s)	792
GlaI	GCGC	3 cut(s)	187, 661, 750
GluI	GCNGC	3 cut(s)	493, 908, 1006
HaeIII	GGCC	1 cut(s)	714
HapII	CCGG	1 cut(s)	456
HgaI	GACGC	1 cut(s)	226
HhaI	GCGC	3 cut(s)	188, 662, 751
Hin1II	CATG	3 cut(s)	367, 481, 866
Hin6I	GCGC	3 cut(s)	186, 660, 749
HinP1I	GCGC	3 cut(s)	186, 660, 749
HindIII	AAGCTT	1 cut(s)	796
HinfI	GANTC	4 cut(s)	244, 328, 949, 997
HpaII	CCGG	1 cut(s)	456
HphI	GGTGA	2 cut(s)	392, 587
Hpy166II	GTNNAC	2 cut(s)	345, 441
Hpy188I	TCNGA	4 cut(s)	82, 255, 322, 333
Hpy188III	TCNNGA	5 cut(s)	89, 241, 466, 669, 980
Hpy8I	GTNNAC	2 cut(s)	345, 441
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	2 cut(s)	35, 80
HpyCH4IV	ACGT	1 cut(s)	938
HpyCH4V	TGCA	5 cut(s)	120, 492, 559, 611, 814
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpySE526I	ACGT	1 cut(s)	938
Hsp92II	CATG	3 cut(s)	367, 481, 866
HspAI	GCGC	3 cut(s)	186, 660, 749
Ksp22I	TGATCA	1 cut(s)	357
Kzo9I	GATC	2 cut(s)	82, 357
LmnI	GCTCC	1 cut(s)	974
LpnPI	CCDG	4 cut(s)	469, 654, 701, 728
Lsp1109I	GCAGC	2 cut(s)	504, 894
LweI	GCATC	6 cut(s)	324, 418, 475, 511, 591, 894
MaeI	CTAG	1 cut(s)	792
MaeII	ACGT	1 cut(s)	938
MaeIII	GTNAC	3 cut(s)	473, 934, 980
MalI	GATC	2 cut(s)	84, 359
MbiI	CCGCTC	1 cut(s)	564
MboI	GATC	2 cut(s)	82, 357
MboII	GAAGA	4 cut(s)	11, 220, 579, 944
MfeI	CAATTG	1 cut(s)	968
MhlI	GDGCHC	4 cut(s)	635, 767, 967, 979
MluCI	AATT	3 cut(s)	507, 606, 968
MlyI	GAGTC	1 cut(s)	322
MmeI	TCCRAC	4 cut(s)	321, 366, 512, 683
MseI	TTAA	1 cut(s)	744
MspA1I	CMGCKG	1 cut(s)	1008
MspI	CCGG	1 cut(s)	456
MspR9I	CCNGG	2 cut(s)	457, 716
MunI	CAATTG	1 cut(s)	968
Mva1269I	GAATGC	1 cut(s)	541
MvaI	CCWGG	1 cut(s)	716
MwoI	GCNNNNNNNGC	1 cut(s)	158
NciI	CCSGG	1 cut(s)	457
NdeI	CATATG	1 cut(s)	214
NdeII	GATC	2 cut(s)	82, 357
NlaIII	CATG	3 cut(s)	367, 481, 866
NmuCI	GTSAC	2 cut(s)	934, 980
NspI	RCATGY	1 cut(s)	367
PaeR7I	CTCGAG	1 cut(s)	466
PciI	ACATGT	1 cut(s)	363
PctI	GAATGC	1 cut(s)	541
PfeI	GAWTC	3 cut(s)	244, 949, 997
PkrI	GCNGC	3 cut(s)	494, 909, 1007
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
PscI	ACATGT	1 cut(s)	363
Psp124BI	GAGCTC	1 cut(s)	979
Psp6I	CCWGG	1 cut(s)	714
PspGI	CCWGG	1 cut(s)	714
PspPI	GGNCC	1 cut(s)	712
RsaI	GTAC	1 cut(s)	875
RsaNI	GTAC	1 cut(s)	874
SacI	GAGCTC	1 cut(s)	979
SaqAI	TTAA	1 cut(s)	744
SatI	GCNGC	3 cut(s)	493, 908, 1006
Sau3AI	GATC	2 cut(s)	82, 357
Sau96I	GGNCC	1 cut(s)	712
SchI	GAGTC	1 cut(s)	322
ScrFI	CCNGG	2 cut(s)	457, 716
SduI	GDGCHC	4 cut(s)	635, 767, 967, 979
SfaNI	GCATC	6 cut(s)	324, 418, 475, 511, 591, 894
Sfr274I	CTCGAG	1 cut(s)	466
SlaI	CTCGAG	1 cut(s)	466
SmlI	CTYRAG	1 cut(s)	466
SmoI	CTYRAG	1 cut(s)	466
Sse9I	AATT	3 cut(s)	507, 606, 968
SsiI	CCGC	5 cut(s)	431, 564, 698, 957, 1006
SspMI	CTAG	1 cut(s)	792
SstI	GAGCTC	1 cut(s)	979
StyD4I	CCNGG	2 cut(s)	455, 714
StyI	CCWWGG	1 cut(s)	985
TaiI	ACGT	1 cut(s)	941
TaqI	TCGA	4 cut(s)	240, 290, 408, 467
TaqII	GACCGA	1 cut(s)	654
TasI	AATT	3 cut(s)	507, 606, 968
TauI	GCSGC	1 cut(s)	1008
TfiI	GAWTC	3 cut(s)	244, 949, 997
Tru1I	TTAA	1 cut(s)	744
Tru9I	TTAA	1 cut(s)	744
TscAI	CASTG	1 cut(s)	1007
TseFI	GTSAC	2 cut(s)	934, 980
TseI	GCWGC	2 cut(s)	492, 907
Tsp45I	GTSAC	2 cut(s)	934, 980
TspDTI	ATGAA	3 cut(s)	17, 519, 801
TspGWI	ACGGA	2 cut(s)	214, 266
TspRI	CASTG	1 cut(s)	1007
XapI	RAATTY	1 cut(s)	507
XceI	RCATGY	1 cut(s)	367
XhoI	CTCGAG	1 cut(s)	466
XspI	CTAG	1 cut(s)	792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.