Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005071

Physical Location & Seq

Genomic Coordinates Forward (+)

2944930 .. 2947229

Gene Structure 2300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG042700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGTGTTTTCGTTTTCATCTTCGTCTTCGTTGCTGACCGCTCCACCCTCCACCCTTCACGTCCTCCCCGCCTCCGATCCTCCGTACAACCTCCTCCAAACCCACCCATCTCTCACTCTCCTCTCCAAATGCAGAAGCATCCAAAATCTCAAACAAGTCCACACCCACATCATCAAGACCGGCCTCCACAACACCCACTTTGCTACGAGCAAGCTCATTGAGTTTTGCGCCGTTTCGCAATTTGGGGACCTCTCCTATGCTCTGTCGGTCTTCGAATGCGTTGAGAATCCGAACCAGATTATTTGGAACACAATTATTCGAGGCTATTCCTTGAGCTCGAAGCCATTACAGGCCGTGGAGTTCTATGTAAGGATGATTGTTTCGGGTGCTGAGCCGAATTCTTACACATTCCCTTTTGTTTTGAAGTCTTGTGCGAAAGCTGGGGCAGCTCAGGAAGGGAAGCAGGTCCATGGGCATGTGTTGAAGCATGGAGTTGGCTCTGATGCGTTTGTGCACACTTCTCTGATCAACATGTATGCGAAAAGTGGTGAATTGGATAATGCAAGGTTGGTTTTTAATAAAAGTCATCTGAGAGATGCGGTTTCGTTTACTGCTTTGATTACTGGCTATGTTTCAAGGGGTCGTATGGATGATGCCCGCGGCTTGTTTGATGAAATTTTAGTAAGAGATGCGGTGTCTTGGAATGCTATGATTTCAGGGTATGCTCAGAGCGGCAGGTTTGAGGAAGCGTTGGCTTTGTTTTCGGATATGCAAAAAGCAAATGTGGTACCTAATGAGAGTACTATGCTTACTGTGCTTTCTGCTTGTGCTCAGTCGGGGTCACTTGAATTGGGAAAATGGGTCGCTTCTTGGATTGAAGACCAGGGACTTGGATCGAATGTTAGGCTTGTTAATGCACTTATTGATATGTACTCAAAGTGTGGTGCTTTGGACACAGCTAGAGGTTTATTTGATGGGGCGGTGGAAATGCAGGTGTTTTCCTCTGTACGTGGATGCAATTTAATAAATTTGGATAGAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

347

Amino Acids

37.88

Weight (kDa)

6.59

Isoelectric Point (pI)

35.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	97 - 146	5.2e-09	PPR repeat family
PPR_1	PF12854	228 - 258	1.2e-06	PPR repeat
PPR_2	PF13041	230 - 277	1.2e-14	PPR repeat family
PPR	PF01535	232 - 261	1.9e-10	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08070 AT1G08070
fragaria_vesca	FvH4_1g03710 FvH4_1g04070
malus_domestica	MD02G1039500.v1.1 MD15G1176200.v1.1 MD15G1180300.v1.1
prunus_persica	Prupe.7G236200_v2.0.a1 Prupe.7G239300_v2.0.a1
pyrus_communis	pycom02g03280 pycom15g15800 pycom15g16170 pycom15g16180
rosa_chinensis	RchiOBHm_Chr2g0089161 RchiOBHm_Chr2g0089561
rosa_laevigata	RLG00000015999 RLG00000016040
rosa_multiflora	Rmu_co8347093.1_g000001 Rmu_sc0006193.1_g000005 Rmu_sc0008909.1_g000002 Rmu_sc0023591.1_g000001
rosa_rugosa	Rorug01G0488000 Rorug02G0001500
rosa_samantha	Rh2AG043600 Rh2BG042300 Rh2CG043600 Rh2CG047500 Rh2DG042700
rosa_wichuraiana	Rw2G003400 Rw2G003590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	982
Acc36I	ACCTGC	3 cut(s)	454, 726, 982
Acc65I	GGTACC	1 cut(s)	787
AccB1I	GGYRCC	1 cut(s)	787
AccBSI	CCGCTC	2 cut(s)	41, 732
AccII	CGCG	1 cut(s)	660
AciI	CCGC	8 cut(s)	39, 69, 599, 658, 660, 692, 732, 980
AclWI	GGATC	2 cut(s)	71, 901
AcsI	RAATTY	3 cut(s)	397, 675, 1027
AfaI	GTAC	5 cut(s)	86, 789, 802, 932, 1008
AflIII	ACRYGT	1 cut(s)	531
AgsI	TTSAA	5 cut(s)	424, 484, 636, 848, 878
AjiI	CACGTC	1 cut(s)	61
AjnI	CCWGG	1 cut(s)	882
AluBI	AGCT	5 cut(s)	214, 336, 440, 449, 959
AluI	AGCT	5 cut(s)	214, 336, 440, 449, 959
Alw21I	GWGCWC	3 cut(s)	338, 516, 832
Alw26I	GTCTC	1 cut(s)	1032
Alw44I	GTGCAC	1 cut(s)	512
AlwI	GGATC	2 cut(s)	71, 901
AoxI	GGCC	2 cut(s)	181, 351
ApaLI	GTGCAC	1 cut(s)	512
ApeKI	GCWGC	1 cut(s)	446
ApoI	RAATTY	3 cut(s)	397, 675, 1027
Asp718I	GGTACC	1 cut(s)	787
AspLEI	GCGC	1 cut(s)	230
AspS9I	GGNCC	2 cut(s)	247, 466
AsuHPI	GGTGA	1 cut(s)	560
AsuII	TTCGAA	1 cut(s)	273
AvaII	GGWCC	2 cut(s)	247, 466
BaeGI	GKGCMC	1 cut(s)	516
BanI	GGYRCC	1 cut(s)	787
BanII	GRGCYC	1 cut(s)	338
BbsI	GAAGAC	3 cut(s)	18, 262, 885
Bbv12I	GWGCWC	3 cut(s)	338, 516, 832
BbvI	GCAGC	1 cut(s)	458
BccI	CCATC	2 cut(s)	115, 968
BceAI	ACGGC	2 cut(s)	215, 338
BciT130I	CCWGG	1 cut(s)	884
BclI	TGATCA	1 cut(s)	525
BcoDI	GTCTC	1 cut(s)	1032
BfaI	CTAG	1 cut(s)	960
BfuAI	ACCTGC	3 cut(s)	454, 726, 982
BisI	GCNGC	3 cut(s)	447, 661, 733
BlpI	GCTNAGC	1 cut(s)	390
BlsI	GCNGC	3 cut(s)	448, 662, 734
BmcAI	AGTACT	1 cut(s)	802
Bme1390I	CCNGG	1 cut(s)	884
Bme18I	GGWCC	2 cut(s)	247, 466
BmgBI	CACGTC	1 cut(s)	61
BmgT120I	GGNCC	2 cut(s)	247, 466
BmiI	GGNNCC	2 cut(s)	248, 789
BmrFI	CCNGG	1 cut(s)	884
BmsI	GCATC	6 cut(s)	147, 493, 586, 643, 679, 1004
BpiI	GAAGAC	3 cut(s)	18, 262, 885
Bpu10I	CCTNAGC	1 cut(s)	450
Bpu1102I	GCTNAGC	1 cut(s)	390
Bpu14I	TTCGAA	1 cut(s)	273
BpuEI	CTTGAG	1 cut(s)	352
BsaAI	YACGTR	1 cut(s)	1010
BsaJI	CCNNGG	4 cut(s)	354, 469, 658, 883
Bse118I	RCCGGY	1 cut(s)	179
Bse1I	ACTGG	1 cut(s)	628
BseBI	CCWGG	1 cut(s)	884
BseDI	CCNNGG	4 cut(s)	354, 469, 658, 883
BseGI	GGATG	4 cut(s)	138, 378, 655, 1019
BseMII	CTCAG	5 cut(s)	381, 464, 581, 740, 845
BseNI	ACTGG	1 cut(s)	628
BseRI	GAGGAG	2 cut(s)	83, 110
BseSI	GKGCMC	1 cut(s)	516
BseXI	GCAGC	1 cut(s)	458
BseYI	CCCAGC	1 cut(s)	440
Bsh1236I	CGCG	1 cut(s)	660
BshFI	GGCC	2 cut(s)	183, 353
BshNI	GGYRCC	1 cut(s)	787
BsiHKAI	GWGCWC	3 cut(s)	338, 516, 832
BsiSI	CCGG	1 cut(s)	180
BslFI	GGGAC	2 cut(s)	260, 900
BsmAI	GTCTC	1 cut(s)	1032
BsmFI	GGGAC	2 cut(s)	260, 900
BsmI	GAATGC	2 cut(s)	281, 709
BsnI	GGCC	2 cut(s)	183, 353
Bsp119I	TTCGAA	1 cut(s)	273
Bsp1286I	GDGCHC	3 cut(s)	338, 516, 832
Bsp143I	GATC	3 cut(s)	76, 525, 893
Bsp1720I	GCTNAGC	1 cut(s)	390
Bsp19I	CCATGG	1 cut(s)	469
BspACI	CCGC	8 cut(s)	39, 69, 599, 658, 660, 692, 732, 980
BspANI	GGCC	2 cut(s)	183, 353
BspCNI	CTCAG	5 cut(s)	382, 463, 582, 739, 844
BspFNI	CGCG	1 cut(s)	660
BspLI	GGNNCC	2 cut(s)	248, 789
BspMI	ACCTGC	3 cut(s)	454, 726, 982
BspPI	GGATC	2 cut(s)	71, 901
BspT104I	TTCGAA	1 cut(s)	273
BspT107I	GGYRCC	1 cut(s)	787
BsrBI	CCGCTC	2 cut(s)	41, 732
BsrFI	RCCGGY	1 cut(s)	179
BsrI	ACTGG	1 cut(s)	628
BssAI	RCCGGY	1 cut(s)	179
BssECI	CCNNGG	4 cut(s)	354, 469, 658, 883
BssMI	GATC	3 cut(s)	76, 525, 893
BssT1I	CCWWGG	1 cut(s)	469
Bst2UI	CCWGG	1 cut(s)	884
Bst4CI	ACNGT	1 cut(s)	814
BstBAI	YACGTR	1 cut(s)	1010
BstBI	TTCGAA	1 cut(s)	273
BstC8I	GCNNGC	2 cut(s)	212, 658
BstDEI	CTNAG	5 cut(s)	390, 450, 590, 726, 831
BstDSI	CCRYGG	3 cut(s)	354, 469, 658
BstF5I	GGATG	4 cut(s)	138, 378, 655, 1019
BstFNI	CGCG	1 cut(s)	660
BstHHI	GCGC	1 cut(s)	230
BstKTI	GATC	3 cut(s)	79, 528, 896
BstMAI	GTCTC	1 cut(s)	1032
BstMBI	GATC	3 cut(s)	76, 525, 893
BstMWI	GCNNNNNNNGC	2 cut(s)	446, 814
BstNI	CCWGG	1 cut(s)	884
BstNSI	RCATGY	2 cut(s)	479, 535
BstSCI	CCNGG	1 cut(s)	882
BstSLI	GKGCMC	1 cut(s)	516
BstUI	CGCG	1 cut(s)	660
BstV1I	GCAGC	1 cut(s)	458
BstV2I	GAAGAC	3 cut(s)	18, 262, 885
BstXI	CCANNNNNNTGG	1 cut(s)	890
BsuRI	GGCC	2 cut(s)	183, 353
BtgI	CCRYGG	3 cut(s)	354, 469, 658
BtrI	CACGTC	1 cut(s)	61
BtsCI	GGATG	4 cut(s)	138, 378, 655, 1019
BveI	ACCTGC	3 cut(s)	454, 726, 982
Cac8I	GCNNGC	2 cut(s)	212, 658
CfoI	GCGC	1 cut(s)	230
Cfr10I	RCCGGY	1 cut(s)	179
Cfr13I	GGNCC	2 cut(s)	247, 466
Cfr42I	CCGCGG	1 cut(s)	661
Csp6I	GTAC	5 cut(s)	85, 788, 801, 931, 1007
CviAII	CATG	4 cut(s)	470, 476, 488, 532
CviQI	GTAC	5 cut(s)	85, 788, 801, 931, 1007
DdeI	CTNAG	5 cut(s)	390, 450, 590, 726, 831
DpnI	GATC	3 cut(s)	78, 527, 895
DpnII	GATC	3 cut(s)	76, 525, 893
Ecl136II	GAGCTC	1 cut(s)	336
Eco130I	CCWWGG	1 cut(s)	469
Eco24I	GRGCYC	1 cut(s)	338
Eco47I	GGWCC	2 cut(s)	247, 466
Eco53kI	GAGCTC	1 cut(s)	336
EcoICRI	GAGCTC	1 cut(s)	336
EcoO109I	RGGNCCY	1 cut(s)	247
EcoRI	GAATTC	1 cut(s)	397
EcoRII	CCWGG	1 cut(s)	882
EcoT14I	CCWWGG	1 cut(s)	469
EcoT38I	GRGCYC	1 cut(s)	338
ErhI	CCWWGG	1 cut(s)	469
FaeI	CATG	4 cut(s)	473, 479, 491, 535
FaqI	GGGAC	2 cut(s)	260, 900
FatI	CATG	4 cut(s)	469, 475, 487, 531
FauI	CCCGC	2 cut(s)	76, 665
FbaI	TGATCA	1 cut(s)	525
Fnu4HI	GCNGC	3 cut(s)	447, 661, 733
FokI	GGATG	4 cut(s)	125, 385, 662, 1026
FriOI	GRGCYC	1 cut(s)	338
Fsp4HI	GCNGC	3 cut(s)	447, 661, 733
FspBI	CTAG	1 cut(s)	960
GlaI	GCGC	1 cut(s)	229
GluI	GCNGC	3 cut(s)	447, 661, 733
GsaI	CCCAGC	1 cut(s)	444
HaeIII	GGCC	2 cut(s)	183, 353
HapII	CCGG	1 cut(s)	180
HhaI	GCGC	1 cut(s)	230
Hin1II	CATG	4 cut(s)	473, 479, 491, 535
Hin6I	GCGC	1 cut(s)	228
HinP1I	GCGC	1 cut(s)	228
HinfI	GANTC	1 cut(s)	286
HpaII	CCGG	1 cut(s)	180
HphI	GGTGA	1 cut(s)	560
Hpy166II	GTNNAC	3 cut(s)	160, 514, 609
Hpy188I	TCNGA	7 cut(s)	76, 291, 502, 525, 591, 729, 766
Hpy188III	TCNNGA	2 cut(s)	175, 452
Hpy8I	GTNNAC	3 cut(s)	160, 514, 609
HpyAV	CCTTC	2 cut(s)	65, 449
HpyCH4III	ACNGT	1 cut(s)	814
HpyCH4IV	ACGT	2 cut(s)	60, 1009
HpyCH4V	TGCA	7 cut(s)	132, 514, 563, 772, 917, 991, 1017
HpyF10VI	GCNNNNNNNGC	2 cut(s)	446, 814
HpyF3I	CTNAG	5 cut(s)	390, 450, 590, 726, 831
HpySE526I	ACGT	2 cut(s)	60, 1009
Hsp92II	CATG	4 cut(s)	473, 479, 491, 535
HspAI	GCGC	1 cut(s)	228
KpnI	GGTACC	1 cut(s)	791
Ksp22I	TGATCA	1 cut(s)	525
KspI	CCGCGG	1 cut(s)	661
Kzo9I	GATC	3 cut(s)	76, 525, 893
LmnI	GCTCC	1 cut(s)	46
Lsp1109I	GCAGC	1 cut(s)	458
LweI	GCATC	6 cut(s)	147, 493, 586, 643, 679, 1004
MaeI	CTAG	1 cut(s)	960
MaeII	ACGT	2 cut(s)	60, 1009
MaeIII	GTNAC	1 cut(s)	840
MalI	GATC	3 cut(s)	78, 527, 895
MbiI	CCGCTC	2 cut(s)	41, 732
MboI	GATC	3 cut(s)	76, 525, 893
MboII	GAAGA	4 cut(s)	12, 18, 262, 890
MhlI	GDGCHC	3 cut(s)	338, 516, 832
MluCI	AATT	8 cut(s)	239, 312, 397, 551, 675, 848, 1018, 1027
MseI	TTAA	3 cut(s)	576, 912, 1022
MslI	CAYNNNNRTG	1 cut(s)	474
MspA1I	CMGCKG	1 cut(s)	660
MspI	CCGG	1 cut(s)	180
MspR9I	CCNGG	1 cut(s)	884
Mva1269I	GAATGC	2 cut(s)	281, 709
MvaI	CCWGG	1 cut(s)	884
MvnI	CGCG	1 cut(s)	660
MwoI	GCNNNNNNNGC	2 cut(s)	446, 814
NcoI	CCATGG	1 cut(s)	469
NdeII	GATC	3 cut(s)	76, 525, 893
NlaIII	CATG	4 cut(s)	473, 479, 491, 535
NlaIV	GGNNCC	2 cut(s)	248, 789
NmuCI	GTSAC	1 cut(s)	840
NspI	RCATGY	2 cut(s)	479, 535
NspV	TTCGAA	1 cut(s)	273
PaqCI	CACCTGC	1 cut(s)	982
PciI	ACATGT	1 cut(s)	531
PctI	GAATGC	2 cut(s)	281, 709
PfeI	GAWTC	1 cut(s)	286
PkrI	GCNGC	3 cut(s)	448, 662, 734
Ppu21I	YACGTR	1 cut(s)	1010
PpuMI	RGGWCCY	1 cut(s)	247
PscI	ACATGT	1 cut(s)	531
Psp124BI	GAGCTC	1 cut(s)	338
Psp5II	RGGWCCY	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	882
PspFI	CCCAGC	1 cut(s)	440
PspGI	CCWGG	1 cut(s)	882
PspN4I	GGNNCC	2 cut(s)	248, 789
PspPI	GGNCC	2 cut(s)	247, 466
PspPPI	RGGWCCY	1 cut(s)	247
RsaI	GTAC	5 cut(s)	86, 789, 802, 932, 1008
RsaNI	GTAC	5 cut(s)	85, 788, 801, 931, 1007
RseI	CAYNNNNRTG	1 cut(s)	474
SacI	GAGCTC	1 cut(s)	338
SacII	CCGCGG	1 cut(s)	661
SaqAI	TTAA	3 cut(s)	576, 912, 1022
SatI	GCNGC	3 cut(s)	447, 661, 733
Sau3AI	GATC	3 cut(s)	76, 525, 893
Sau96I	GGNCC	2 cut(s)	247, 466
ScaI	AGTACT	1 cut(s)	802
ScrFI	CCNGG	1 cut(s)	884
SduI	GDGCHC	3 cut(s)	338, 516, 832
SfaNI	GCATC	6 cut(s)	147, 493, 586, 643, 679, 1004
Sfr303I	CCGCGG	1 cut(s)	661
SfuI	TTCGAA	1 cut(s)	273
SgrBI	CCGCGG	1 cut(s)	661
SinI	GGWCC	2 cut(s)	247, 466
SmiMI	CAYNNNNRTG	1 cut(s)	474
SmlI	CTYRAG	1 cut(s)	331
SmoI	CTYRAG	1 cut(s)	331
Sse9I	AATT	8 cut(s)	239, 312, 397, 551, 675, 848, 1018, 1027
SsiI	CCGC	8 cut(s)	39, 69, 599, 658, 660, 692, 732, 980
SspMI	CTAG	1 cut(s)	960
SstI	GAGCTC	1 cut(s)	338
StyD4I	CCNGG	1 cut(s)	882
StyI	CCWWGG	1 cut(s)	469
TaaI	ACNGT	1 cut(s)	814
TaiI	ACGT	2 cut(s)	63, 1012
TaqI	TCGA	4 cut(s)	273, 319, 338, 896
TaqII	GACCGA	1 cut(s)	256
TasI	AATT	8 cut(s)	239, 312, 397, 551, 675, 848, 1018, 1027
TatI	WGTACW	2 cut(s)	800, 930
TauI	GCSGC	2 cut(s)	663, 735
TfiI	GAWTC	1 cut(s)	286
Tru1I	TTAA	3 cut(s)	576, 912, 1022
Tru9I	TTAA	3 cut(s)	576, 912, 1022
TseFI	GTSAC	1 cut(s)	840
TseI	GCWGC	1 cut(s)	446
Tsp45I	GTSAC	1 cut(s)	840
TspDTI	ATGAA	2 cut(s)	6, 687
TspGWI	ACGGA	1 cut(s)	72
VneI	GTGCAC	1 cut(s)	512
VpaK11BI	GGWCC	2 cut(s)	247, 466
XapI	RAATTY	3 cut(s)	397, 675, 1027
XceI	RCATGY	2 cut(s)	479, 535
XspI	CTAG	1 cut(s)	960
ZrmI	AGTACT	1 cut(s)	802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.