Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0017553

Physical Location & Seq

Genomic Coordinates Reverse (-)

3229370 .. 3230839

Gene Structure 1470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG045500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1470 bp

ATGTATGCGGAATTGGGTCTAGTTGATAATGTGAAGCAGGTGTTTGATGAGATGCCTGAGAGAGATGTTGTTTCTTGGAATGTTACGATTTCAGGGTGTGTTAGGTGTATGAGGTTTAGGGAGGCAGTGAGTGTGTTCCGGCGGATGAGAAAAGAGAGCAATGAGAAGCCGGATGAAGCTACAGTTGTGAGCACGCTTTCGGCTTGCGCAGCACTGCAAGATGTGGAGCTTGGTAGAGAAATTCATGACTATGTTAGAGCTGAGCTTAAGTTCACTAGTATAATCGGAAATGCGGTGTTGGATATGTATGCTAAGTGTGGTTGTTTGAGTGAAGCAAGGAAAGTTTTCGATGAAATTCCGTTGAAAAATGTCATGTGTTGGACTAGTATGGTGTGTGGGTATGTGAATTGTGGTATGCTGGATGAGGCTAGAGAGTTGTTTGATAGGAGTCCTACTAAGGATGTTGTTCTATGGACGGCTATGATGAATGGGTATGTACAGTATAACCAATTTGATGAGGCAGTGGCTCTATTCCAAGAGATGCAATTTAGAAGAGTTCAAGTGGATAAATTCACAGTTGTTGCGCTCCTCACAGGCTGTGCTCAGTTGGGAGCATTAGAGCAAGGGAAATGGATTCACGGATACATAGACGAAAATGGAATCAAAATTGATGCAGTTGTTGGTACTGCTCTTATAGAAATGTATGCAAAATGTGGGTGCATAGACAAGTCTCTGGAGATTTTCAATGCATTGAATGAAAAAGATGCAGCCACTTGGACTTCAATGGTCTGCGCGCTTGCAATGAATGGAAAGACAAGCAAAGCACTCGAGTTGTTCTCCAAAATGAAGCAGGTTAAGATCAACCCTGATGATATCACCTTCATTGGTGTCTTGAGTGCTTGTAGTCATGGAGGATTGGTTGACGAAGGACGAAAGTTGTTCAACTACATGAGAAAGGACTATGGGATCGAGCCAAAGTTAGAACATTACGGGTGTCTGATTGACCTTCTTGGTCGGGCTGGACTCCTAGACGAGGCAGAGGAGCTGATAGAAAGTATTCCCAGTGAAAACAATAAGATTGTAGTTCCACTTTACAGTTCTTTACTCAGTGCTTGCAGAATCCATGGCAATGTTAACATGAGTGAAAGAGTGGCTAAAAGGCTATCGGATATTGAGTCCAGCGGCTCGAGTGCTCACACGCTTCTGGCCAACATCTACGCAGATGCTGAGAGATGGGAAGATGTAACAAAGGTGAGGAGGAGAATGAGAGATCTCGGAGTGAAAAAGATGCCTGGGTGCAGTTCGGTTGAGATTAATGGCATTGTCCATGAGTTCCTTGTTGGTGATTCATCTCACCCAGAAACGGAAAAGATATACTCTATGTTGCATAGATTGATAAAGCCATTAGTGGATTTAGAAGAGAATTACGGAATAGAAACAGAAATCTCAGGTTTAGTAAGTTTCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

489

Amino Acids

54.78

Weight (kDa)

5.2

Isoelectric Point (pI)

40.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	21 - 70	1.1e-07	PPR repeat family
PPR	PF01535	24 - 52	8.1e-06	PPR repeat
PPR_2	PF13041	153 - 201	2.4e-12	PPR repeat family
PPR	PF01535	156 - 184	1.4e-06	PPR repeat
PPR_2	PF13041	255 - 302	2e-09	PPR repeat family
PPR	PF01535	258 - 284	2e-06	PPR repeat
E_motif	PF20431	375 - 437	2.2e-18	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31430 AT1G31430
fragaria_vesca	FvH4_1g04051
malus_domestica	MD04G1011600.v1.1
prunus_persica	Prupe.7G236400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0089541
rosa_laevigata	RLG00000016038
rosa_multiflora	Rmu_sc0006193.1_g000007
rosa_rugosa	Rorug02G0001500
rosa_samantha	Rh2BG045500 Rh2BG045600 Rh2DG046800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	28
Acc16I	TGCGCA	1 cut(s)	208
Acc36I	ACCTGC	2 cut(s)	28, 841
AccII	CGCG	1 cut(s)	794
AciI	CCGC	4 cut(s)	8, 142, 293, 1182
AclWI	GGATC	1 cut(s)	974
AcoI	YGGCCR	1 cut(s)	1206
AcsI	RAATTY	3 cut(s)	240, 354, 569
AfaI	GTAC	2 cut(s)	498, 685
AfiI	CCNNNNNNNGG	2 cut(s)	1033, 1363
AflII	CTTAAG	1 cut(s)	266
AgsI	TTSAA	6 cut(s)	364, 560, 745, 754, 783, 943
AhlI	ACTAGT	2 cut(s)	275, 383
AjnI	CCWGG	1 cut(s)	1291
AluBI	AGCT	5 cut(s)	179, 229, 260, 265, 1045
AluI	AGCT	5 cut(s)	179, 229, 260, 265, 1045
Alw21I	GWGCWC	3 cut(s)	194, 604, 1195
Alw26I	GTCTC	1 cut(s)	735
AlwI	GGATC	1 cut(s)	974
AlwNI	CAGNNNCTG	1 cut(s)	1226
Ama87I	CYCGRG	2 cut(s)	827, 1186
AoxI	GGCC	1 cut(s)	1206
ApeKI	GCWGC	2 cut(s)	209, 767
ApoI	RAATTY	3 cut(s)	240, 354, 569
AseI	ATTAAT	1 cut(s)	1314
Asp700I	GAANNNNTTC	2 cut(s)	344, 1056
AspLEI	GCGC	4 cut(s)	209, 586, 794, 796
AsuHPI	GGTGA	4 cut(s)	868, 1264, 1346, 1355
AvaI	CYCGRG	2 cut(s)	827, 1186
BalI	TGGCCA	1 cut(s)	1208
Bbv12I	GWGCWC	3 cut(s)	194, 604, 1195
BbvI	GCAGC	2 cut(s)	221, 779
BccI	CCATC	1 cut(s)	1227
BceAI	ACGGC	1 cut(s)	492
BcgI	CGANNNNNNTGC	2 cut(s)	808, 842
BciT130I	CCWGG	1 cut(s)	1293
BciVI	GTATCC	1 cut(s)	635
BcoDI	GTCTC	1 cut(s)	735
BcuI	ACTAGT	2 cut(s)	275, 383
BfaI	CTAG	5 cut(s)	20, 276, 384, 429, 1028
BfmI	CTRYAG	1 cut(s)	180
BfrI	CTTAAG	1 cut(s)	266
BfuAI	ACCTGC	2 cut(s)	28, 841
BfuI	GTATCC	1 cut(s)	635
BglII	AGATCT	1 cut(s)	1270
BisI	GCNGC	3 cut(s)	210, 768, 1183
BlpI	GCTNAGC	1 cut(s)	261
BlsI	GCNGC	3 cut(s)	211, 769, 1184
Bme1390I	CCNGG	1 cut(s)	1293
BmeT110I	CYCGRG	2 cut(s)	827, 1186
BmrFI	CCNGG	1 cut(s)	1293
BmrI	ACTGGG	1 cut(s)	1056
BmsI	GCATC	6 cut(s)	42, 531, 661, 754, 1213, 1278
BmuI	ACTGGG	1 cut(s)	1056
BplI	GAGNNNNNCTC	2 cut(s)	821, 853
BpmI	CTGGAG	1 cut(s)	755
Bpu1102I	GCTNAGC	1 cut(s)	261
BpuEI	CTTGAG	1 cut(s)	913
BsaJI	CCNNGG	2 cut(s)	1123, 1292
BsaXI	ACNNNNNCTCC	2 cut(s)	903, 933
Bsc4I	CCNNNNNNNGG	2 cut(s)	1033, 1363
Bse1I	ACTGG	1 cut(s)	1062
Bse3DI	GCAATG	3 cut(s)	166, 807, 1135
BseBI	CCWGG	1 cut(s)	1293
BseDI	CCNNGG	2 cut(s)	1123, 1292
BseGI	GGATG	4 cut(s)	150, 178, 427, 466
BseLI	CCNNNNNNNGG	2 cut(s)	1033, 1363
BseMI	GCAATG	3 cut(s)	166, 807, 1135
BseMII	CTCAG	6 cut(s)	48, 252, 617, 1120, 1218, 1461
BseNI	ACTGG	1 cut(s)	1062
BsePI	GCGCGC	1 cut(s)	792
BseRI	GAGGAG	4 cut(s)	578, 1055, 1270, 1273
BseXI	GCAGC	2 cut(s)	221, 779
BsgI	GTGCAG	1 cut(s)	1318
Bsh1236I	CGCG	1 cut(s)	794
BshFI	GGCC	1 cut(s)	1208
BsiHKAI	GWGCWC	3 cut(s)	194, 604, 1195
BsiHKCI	CYCGRG	2 cut(s)	827, 1186
BsiSI	CCGG	2 cut(s)	139, 170
BslI	CCNNNNNNNGG	2 cut(s)	1033, 1363
BsmAI	GTCTC	1 cut(s)	735
BsnI	GGCC	1 cut(s)	1208
BsoBI	CYCGRG	2 cut(s)	827, 1186
Bsp1286I	GDGCHC	3 cut(s)	194, 604, 1195
Bsp1407I	TGTACA	1 cut(s)	496
Bsp143I	GATC	3 cut(s)	858, 966, 1270
Bsp1720I	GCTNAGC	1 cut(s)	261
Bsp19I	CCATGG	1 cut(s)	1123
BspACI	CCGC	4 cut(s)	8, 142, 293, 1182
BspANI	GGCC	1 cut(s)	1208
BspCNI	CTCAG	6 cut(s)	49, 253, 616, 1119, 1219, 1460
BspFNI	CGCG	1 cut(s)	794
BspHI	TCATGA	1 cut(s)	244
BspMI	ACCTGC	2 cut(s)	28, 841
BspPI	GGATC	1 cut(s)	974
BspTI	CTTAAG	1 cut(s)	266
BsrDI	GCAATG	3 cut(s)	166, 807, 1135
BsrGI	TGTACA	1 cut(s)	496
BsrI	ACTGG	1 cut(s)	1062
BssECI	CCNNGG	2 cut(s)	1123, 1292
BssHII	GCGCGC	1 cut(s)	792
BssMI	GATC	3 cut(s)	858, 966, 1270
BssT1I	CCWWGG	1 cut(s)	1123
Bst2UI	CCWGG	1 cut(s)	1293
Bst4CI	ACNGT	4 cut(s)	184, 501, 577, 1097
Bst6I	CTCTTC	2 cut(s)	547, 1413
BstAFI	CTTAAG	1 cut(s)	266
BstAUI	TGTACA	1 cut(s)	496
BstC8I	GCNNGC	5 cut(s)	194, 205, 794, 798, 1114
BstDEI	CTNAG	8 cut(s)	57, 261, 312, 456, 603, 1106, 1227, 1447
BstDSI	CCRYGG	1 cut(s)	1123
BstENI	CCTNNNNNAGG	1 cut(s)	1031
BstF5I	GGATG	4 cut(s)	150, 178, 427, 466
BstFNI	CGCG	1 cut(s)	794
BstHHI	GCGC	4 cut(s)	209, 586, 794, 796
BstKTI	GATC	3 cut(s)	861, 969, 1273
BstMAI	GTCTC	1 cut(s)	735
BstMBI	GATC	3 cut(s)	858, 966, 1270
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstNI	CCWGG	1 cut(s)	1293
BstSCI	CCNGG	1 cut(s)	1291
BstSFI	CTRYAG	1 cut(s)	180
BstUI	CGCG	1 cut(s)	794
BstV1I	GCAGC	2 cut(s)	221, 779
BstX2I	RGATCY	1 cut(s)	1270
BstYI	RGATCY	1 cut(s)	1270
BsuI	GTATCC	1 cut(s)	635
BsuRI	GGCC	1 cut(s)	1208
BtgI	CCRYGG	1 cut(s)	1123
BtsCI	GGATG	4 cut(s)	150, 178, 427, 466
BtsI	GCAGTG	3 cut(s)	132, 212, 528
BtsIMutI	CAGTG	5 cut(s)	132, 212, 528, 1069, 1114
BveI	ACCTGC	2 cut(s)	28, 841
Cac8I	GCNNGC	5 cut(s)	194, 205, 794, 798, 1114
CaiI	CAGNNNCTG	1 cut(s)	1226
CciI	TCATGA	1 cut(s)	244
CfoI	GCGC	4 cut(s)	209, 586, 794, 796
Csp6I	GTAC	2 cut(s)	497, 684
CviAII	CATG	7 cut(s)	245, 373, 908, 949, 1124, 1138, 1328
CviQI	GTAC	2 cut(s)	497, 684
DdeI	CTNAG	8 cut(s)	57, 261, 312, 456, 603, 1106, 1227, 1447
DpnI	GATC	3 cut(s)	860, 968, 1272
DpnII	GATC	3 cut(s)	858, 966, 1270
EaeI	YGGCCR	1 cut(s)	1206
Eam1104I	CTCTTC	2 cut(s)	547, 1413
EarI	CTCTTC	2 cut(s)	547, 1413
EciI	GGCGGA	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	1123
Eco32I	GATATC	1 cut(s)	874
Eco88I	CYCGRG	2 cut(s)	827, 1186
EcoNI	CCTNNNNNAGG	1 cut(s)	1031
EcoRII	CCWGG	1 cut(s)	1291
EcoRV	GATATC	1 cut(s)	874
EcoT14I	CCWWGG	1 cut(s)	1123
EcoT22I	ATGCAT	1 cut(s)	751
ErhI	CCWWGG	1 cut(s)	1123
FaeI	CATG	7 cut(s)	248, 376, 911, 952, 1127, 1141, 1331
FatI	CATG	7 cut(s)	244, 372, 907, 948, 1123, 1137, 1327
Fnu4HI	GCNGC	3 cut(s)	210, 768, 1183
FokI	GGATG	4 cut(s)	157, 185, 434, 473
Fsp4HI	GCNGC	3 cut(s)	210, 768, 1183
FspBI	CTAG	5 cut(s)	20, 276, 384, 429, 1028
FspI	TGCGCA	1 cut(s)	208
GlaI	GCGC	4 cut(s)	208, 585, 793, 795
GluI	GCNGC	3 cut(s)	210, 768, 1183
GsuI	CTGGAG	1 cut(s)	755
HaeIII	GGCC	1 cut(s)	1208
HapII	CCGG	2 cut(s)	139, 170
HhaI	GCGC	4 cut(s)	209, 586, 794, 796
Hin1II	CATG	7 cut(s)	248, 376, 911, 952, 1127, 1141, 1331
Hin6I	GCGC	4 cut(s)	207, 584, 792, 794
HinP1I	GCGC	4 cut(s)	207, 584, 792, 794
HincII	GTYRAC	2 cut(s)	922, 1135
HindII	GTYRAC	2 cut(s)	922, 1135
HinfI	GANTC	7 cut(s)	448, 634, 660, 1023, 1119, 1175, 1346
HpaI	GTTAAC	1 cut(s)	1135
HpaII	CCGG	2 cut(s)	139, 170
HphI	GGTGA	4 cut(s)	868, 1264, 1346, 1355
Hpy166II	GTNNAC	3 cut(s)	273, 922, 1135
Hpy188I	TCNGA	4 cut(s)	287, 999, 1168, 1277
Hpy188III	TCNNGA	3 cut(s)	245, 734, 892
Hpy8I	GTNNAC	3 cut(s)	273, 922, 1135
HpyAV	CCTTC	3 cut(s)	889, 920, 1016
HpyCH4III	ACNGT	4 cut(s)	184, 501, 577, 1097
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
HpyF3I	CTNAG	8 cut(s)	57, 261, 312, 456, 603, 1106, 1227, 1447
Hsp92II	CATG	7 cut(s)	248, 376, 911, 952, 1127, 1141, 1331
HspAI	GCGC	4 cut(s)	207, 584, 792, 794
KspAI	GTTAAC	1 cut(s)	1135
Kzo9I	GATC	3 cut(s)	858, 966, 1270
LmnI	GCTCC	4 cut(s)	226, 591, 611, 1042
Lsp1109I	GCAGC	2 cut(s)	221, 779
LweI	GCATC	6 cut(s)	42, 531, 661, 754, 1213, 1278
MaeI	CTAG	5 cut(s)	20, 276, 384, 429, 1028
MaeIII	GTNAC	2 cut(s)	82, 1243
MalI	GATC	3 cut(s)	860, 968, 1272
MboI	GATC	3 cut(s)	858, 966, 1270
MboII	GAAGA	3 cut(s)	564, 1250, 1430
MflI	RGATCY	1 cut(s)	1270
MhlI	GDGCHC	3 cut(s)	194, 604, 1195
MlsI	TGGCCA	1 cut(s)	1208
MluCI	AATT	9 cut(s)	11, 240, 354, 406, 509, 545, 569, 666, 1423
MluNI	TGGCCA	1 cut(s)	1208
MlyI	GAGTC	3 cut(s)	457, 1017, 1184
MmeI	TCCRAC	2 cut(s)	279, 359
Mox20I	TGGCCA	1 cut(s)	1208
Mph1103I	ATGCAT	1 cut(s)	751
MroXI	GAANNNNTTC	2 cut(s)	344, 1056
MscI	TGGCCA	1 cut(s)	1208
MseI	TTAA	4 cut(s)	267, 855, 1134, 1314
MslI	CAYNNNNRTG	2 cut(s)	249, 1128
Msp20I	TGGCCA	1 cut(s)	1208
MspA1I	CMGCKG	1 cut(s)	1182
MspCI	CTTAAG	1 cut(s)	266
MspI	CCGG	2 cut(s)	139, 170
MspR9I	CCNGG	1 cut(s)	1293
MvaI	CCWGG	1 cut(s)	1293
MvnI	CGCG	1 cut(s)	794
MwoI	GCNNNNNNNGC	1 cut(s)	209
NcoI	CCATGG	1 cut(s)	1123
NdeII	GATC	3 cut(s)	858, 966, 1270
NlaIII	CATG	7 cut(s)	248, 376, 911, 952, 1127, 1141, 1331
NsbI	TGCGCA	1 cut(s)	208
NsiI	ATGCAT	1 cut(s)	751
PaeR7I	CTCGAG	2 cut(s)	827, 1186
PagI	TCATGA	1 cut(s)	244
PaqCI	CACCTGC	1 cut(s)	28
PauI	GCGCGC	1 cut(s)	792
PdmI	GAANNNNTTC	2 cut(s)	344, 1056
PfeI	GAWTC	4 cut(s)	634, 660, 1119, 1346
PkrI	GCNGC	3 cut(s)	211, 769, 1184
PleI	GAGTC	3 cut(s)	456, 1017, 1183
PpsI	GAGTC	3 cut(s)	456, 1017, 1183
PshBI	ATTAAT	1 cut(s)	1314
Psp6I	CCWGG	1 cut(s)	1291
PspGI	CCWGG	1 cut(s)	1291
PspXI	VCTCGAGB	2 cut(s)	827, 1186
PstNI	CAGNNNCTG	1 cut(s)	1226
PsuI	RGATCY	1 cut(s)	1270
PteI	GCGCGC	1 cut(s)	792
RsaI	GTAC	2 cut(s)	498, 685
RsaNI	GTAC	2 cut(s)	497, 684
RseI	CAYNNNNRTG	2 cut(s)	249, 1128
SaqAI	TTAA	4 cut(s)	267, 855, 1134, 1314
SatI	GCNGC	3 cut(s)	210, 768, 1183
Sau3AI	GATC	3 cut(s)	858, 966, 1270
SchI	GAGTC	3 cut(s)	457, 1017, 1184
ScrFI	CCNGG	1 cut(s)	1293
SduI	GDGCHC	3 cut(s)	194, 604, 1195
SfaNI	GCATC	6 cut(s)	42, 531, 661, 754, 1213, 1278
SfcI	CTRYAG	1 cut(s)	180
Sfr274I	CTCGAG	2 cut(s)	827, 1186
SlaI	CTCGAG	2 cut(s)	827, 1186
SmiMI	CAYNNNNRTG	2 cut(s)	249, 1128
SmlI	CTYRAG	4 cut(s)	266, 827, 892, 1186
SmoI	CTYRAG	4 cut(s)	266, 827, 892, 1186
SpeI	ACTAGT	2 cut(s)	275, 383
Sse9I	AATT	9 cut(s)	11, 240, 354, 406, 509, 545, 569, 666, 1423
SsiI	CCGC	4 cut(s)	8, 142, 293, 1182
SspMI	CTAG	5 cut(s)	20, 276, 384, 429, 1028
StyD4I	CCNGG	1 cut(s)	1291
StyI	CCWWGG	1 cut(s)	1123
TaaI	ACNGT	4 cut(s)	184, 501, 577, 1097
TaqI	TCGA	4 cut(s)	348, 828, 969, 1187
TasI	AATT	9 cut(s)	11, 240, 354, 406, 509, 545, 569, 666, 1423
TatI	WGTACW	1 cut(s)	496
TauI	GCSGC	1 cut(s)	1185
TfiI	GAWTC	4 cut(s)	634, 660, 1119, 1346
Tru1I	TTAA	4 cut(s)	267, 855, 1134, 1314
Tru9I	TTAA	4 cut(s)	267, 855, 1134, 1314
TscAI	CASTG	5 cut(s)	132, 219, 528, 1069, 1114
TseI	GCWGC	2 cut(s)	209, 767
TspDTI	ATGAA	9 cut(s)	189, 233, 366, 500, 771, 818, 860, 871, 1338
TspGWI	ACGGA	4 cut(s)	348, 654, 1379, 1443
TspRI	CASTG	5 cut(s)	132, 219, 528, 1069, 1114
Vha464I	CTTAAG	1 cut(s)	266
VspI	ATTAAT	1 cut(s)	1314
XagI	CCTNNNNNAGG	1 cut(s)	1031
XapI	RAATTY	3 cut(s)	240, 354, 569
XhoI	CTCGAG	2 cut(s)	827, 1186
XmnI	GAANNNNTTC	2 cut(s)	344, 1056
XspI	CTAG	5 cut(s)	20, 276, 384, 429, 1028
Zsp2I	ATGCAT	1 cut(s)	751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.