Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0017553

Physical Location & Seq

Genomic Coordinates Reverse (-)

3230965 .. 3231288

Gene Structure 324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG045600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGCTAAACAAAGCATCATGCATCCAACTCCTCCAGAGCTGCAAATCCATGAAGCAGCTCAAACAGATCCAAAACCAGATGCTCCTTCTTGGACTACACCAATGCAGAGCCACCCACAACAAGCTCATGGTCTTCTGCACAGACCCAACTCTTGGAGACTTGCATTACGCCGAGAAAATCTTCGATCACATCCAAACCCCTGGTTTGTTCATCTACAATGTAATGATCAAAGCTTTAGCCAAAAGGAGAAGATTCAAAAGCGTCATTGAGCTCTTTCGGCGGTTGAGGGAAGAGGGTTTGTGGCCCGATAATTTCACGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

107

Amino Acids

12.64

Weight (kDa)

9.65

Isoelectric Point (pI)

71.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	67 - 107	4.7e-08	PPR repeat family
PPR	PF01535	71 - 100	3.6e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31430 AT1G31430
fragaria_vesca	FvH4_1g04051
malus_domestica	MD04G1011600.v1.1
prunus_persica	Prupe.7G236400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0089541
rosa_laevigata	RLG00000016038
rosa_multiflora	Rmu_sc0006193.1_g000007
rosa_rugosa	Rorug02G0001500
rosa_samantha	Rh2BG045500 Rh2BG045600 Rh2DG046800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	152
AciI	CCGC	1 cut(s)	280
AclWI	GGATC	1 cut(s)	61
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	1 cut(s)	152
AgsI	TTSAA	1 cut(s)	256
AjnI	CCWGG	1 cut(s)	199
AluBI	AGCT	5 cut(s)	39, 58, 124, 233, 271
AluI	AGCT	5 cut(s)	39, 58, 124, 233, 271
Alw21I	GWGCWC	1 cut(s)	273
Alw26I	GTCTC	1 cut(s)	150
AlwI	GGATC	1 cut(s)	61
AoxI	GGCC	1 cut(s)	302
ApeKI	GCWGC	2 cut(s)	39, 55
Asp700I	GAANNNNTTC	1 cut(s)	179
AspS9I	GGNCC	1 cut(s)	303
BanII	GRGCYC	1 cut(s)	273
BbsI	GAAGAC	1 cut(s)	124
Bbv12I	GWGCWC	1 cut(s)	273
BbvI	GCAGC	2 cut(s)	26, 67
BciT130I	CCWGG	1 cut(s)	201
BclI	TGATCA	1 cut(s)	225
BcoDI	GTCTC	1 cut(s)	150
BisI	GCNGC	2 cut(s)	40, 56
BlsI	GCNGC	2 cut(s)	41, 57
Bme1390I	CCNGG	1 cut(s)	201
BmgT120I	GGNCC	1 cut(s)	303
BmrFI	CCNGG	1 cut(s)	201
BmsI	GCATC	3 cut(s)	23, 30, 69
BpiI	GAAGAC	1 cut(s)	124
BpmI	CTGGAG	1 cut(s)	17
BsaAI	YACGTR	1 cut(s)	318
BsaJI	CCNNGG	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	1 cut(s)	152
BseBI	CCWGG	1 cut(s)	201
BseDI	CCNNGG	1 cut(s)	199
BseGI	GGATG	2 cut(s)	21, 189
BseLI	CCNNNNNNNGG	1 cut(s)	152
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	2 cut(s)	26, 67
BsgI	GTGCAG	1 cut(s)	121
BshFI	GGCC	1 cut(s)	304
BsiHKAI	GWGCWC	1 cut(s)	273
BslI	CCNNNNNNNGG	1 cut(s)	152
BsmAI	GTCTC	1 cut(s)	150
BsnI	GGCC	1 cut(s)	304
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp143I	GATC	3 cut(s)	66, 184, 225
BspACI	CCGC	1 cut(s)	280
BspANI	GGCC	1 cut(s)	304
BspPI	GGATC	1 cut(s)	61
BssECI	CCNNGG	1 cut(s)	199
BssMI	GATC	3 cut(s)	66, 184, 225
Bst2UI	CCWGG	1 cut(s)	201
Bst6I	CTCTTC	1 cut(s)	285
BstBAI	YACGTR	1 cut(s)	318
BstF5I	GGATG	2 cut(s)	21, 189
BstKTI	GATC	3 cut(s)	69, 187, 228
BstMAI	GTCTC	1 cut(s)	150
BstMBI	GATC	3 cut(s)	66, 184, 225
BstMWI	GCNNNNNNNGC	1 cut(s)	277
BstNI	CCWGG	1 cut(s)	201
BstSCI	CCNGG	1 cut(s)	199
BstV1I	GCAGC	2 cut(s)	26, 67
BstV2I	GAAGAC	1 cut(s)	124
BstX2I	RGATCY	1 cut(s)	66
BstXI	CCANNNNNNTGG	1 cut(s)	200
BstYI	RGATCY	1 cut(s)	66
BsuRI	GGCC	1 cut(s)	304
BtsCI	GGATG	2 cut(s)	21, 189
Cfr13I	GGNCC	1 cut(s)	303
CseI	GACGC	1 cut(s)	250
Csp6I	GTAC	1 cut(s)	319
CviAII	CATG	3 cut(s)	18, 49, 127
CviJI	RGCY	8 cut(s)	39, 58, 110, 124, 233, 239, 271, 304
CviKI_1	RGCY	8 cut(s)	39, 58, 110, 124, 233, 239, 271, 304
CviQI	GTAC	1 cut(s)	319
DpnI	GATC	3 cut(s)	68, 186, 227
DpnII	GATC	3 cut(s)	66, 184, 225
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
Ecl136II	GAGCTC	1 cut(s)	271
Eco24I	GRGCYC	1 cut(s)	273
Eco53kI	GAGCTC	1 cut(s)	271
EcoICRI	GAGCTC	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	199
EcoT22I	ATGCAT	1 cut(s)	23
EcoT38I	GRGCYC	1 cut(s)	273
FaeI	CATG	3 cut(s)	21, 52, 130
FaiI	YATR	3 cut(s)	19, 50, 128
FatI	CATG	3 cut(s)	17, 48, 126
FbaI	TGATCA	1 cut(s)	225
Fnu4HI	GCNGC	2 cut(s)	40, 56
FokI	GGATG	2 cut(s)	8, 176
FriOI	GRGCYC	1 cut(s)	273
Fsp4HI	GCNGC	2 cut(s)	40, 56
GluI	GCNGC	2 cut(s)	40, 56
GsuI	CTGGAG	1 cut(s)	17
HaeIII	GGCC	1 cut(s)	304
HgaI	GACGC	1 cut(s)	250
Hin1II	CATG	3 cut(s)	21, 52, 130
HindIII	AAGCTT	1 cut(s)	231
HinfI	GANTC	1 cut(s)	252
Hpy188III	TCNNGA	1 cut(s)	34
HpyAV	CCTTC	1 cut(s)	95
HpyCH4IV	ACGT	1 cut(s)	317
HpyCH4V	TGCA	5 cut(s)	21, 42, 105, 138, 163
HpyF10VI	GCNNNNNNNGC	1 cut(s)	277
HpySE526I	ACGT	1 cut(s)	317
Hsp92II	CATG	3 cut(s)	21, 52, 130
Ksp22I	TGATCA	1 cut(s)	225
Kzo9I	GATC	3 cut(s)	66, 184, 225
LmnI	GCTCC	1 cut(s)	87
LpnPI	CCDG	4 cut(s)	47, 89, 186, 213
Lsp1109I	GCAGC	2 cut(s)	26, 67
LweI	GCATC	3 cut(s)	23, 30, 69
MaeII	ACGT	1 cut(s)	317
MalI	GATC	3 cut(s)	68, 186, 227
MboI	GATC	3 cut(s)	66, 184, 225
MboII	GAAGA	4 cut(s)	124, 172, 261, 302
MflI	RGATCY	1 cut(s)	66
MhlI	GDGCHC	1 cut(s)	273
MluCI	AATT	1 cut(s)	310
MmeI	TCCRAC	1 cut(s)	49
MnlI	CCTC	3 cut(s)	41, 279, 286
Mph1103I	ATGCAT	1 cut(s)	23
MroXI	GAANNNNTTC	1 cut(s)	179
MspR9I	CCNGG	1 cut(s)	201
MvaI	CCWGG	1 cut(s)	201
MwoI	GCNNNNNNNGC	1 cut(s)	277
NdeII	GATC	3 cut(s)	66, 184, 225
NlaIII	CATG	3 cut(s)	21, 52, 130
NmeAIII	GCCGAG	1 cut(s)	196
NsiI	ATGCAT	1 cut(s)	23
PdmI	GAANNNNTTC	1 cut(s)	179
PfeI	GAWTC	1 cut(s)	252
PflMI	CCANNNNNTGG	1 cut(s)	152
PkrI	GCNGC	2 cut(s)	41, 57
Ppu21I	YACGTR	1 cut(s)	318
Psp124BI	GAGCTC	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	199
PspPI	GGNCC	1 cut(s)	303
PsuI	RGATCY	1 cut(s)	66
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
SacI	GAGCTC	1 cut(s)	273
SatI	GCNGC	2 cut(s)	40, 56
Sau3AI	GATC	3 cut(s)	66, 184, 225
Sau96I	GGNCC	1 cut(s)	303
ScrFI	CCNGG	1 cut(s)	201
SduI	GDGCHC	1 cut(s)	273
SetI	ASST	6 cut(s)	41, 60, 126, 235, 273, 320
SfaNI	GCATC	3 cut(s)	23, 30, 69
Sse9I	AATT	1 cut(s)	310
SsiI	CCGC	1 cut(s)	280
SstI	GAGCTC	1 cut(s)	273
StyD4I	CCNGG	1 cut(s)	199
TaiI	ACGT	1 cut(s)	320
TaqI	TCGA	1 cut(s)	183
TasI	AATT	1 cut(s)	310
TfiI	GAWTC	1 cut(s)	252
TseI	GCWGC	2 cut(s)	39, 55
TspDTI	ATGAA	2 cut(s)	65, 199
Van91I	CCANNNNNTGG	1 cut(s)	152
XmnI	GAANNNNTTC	1 cut(s)	179
Zsp2I	ATGCAT	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.