tobamovirus multiplication
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G32370 AT1G32370 AT1G32370 AT1G32370 |
| fragaria_vesca | FvH4_5g21430 FvH4_5g21430 |
| malus_domestica | MD06G1029000.v1.1 |
| prunus_persica | Prupe.5G042800_v2.0.a1 |
| pyrus_communis | pycom06g02310 |
| rosa_chinensis | RchiOBHm_Chr7g0208861 |
| rosa_laevigata | RLG00000003191 |
| rosa_multiflora | Rmu_sc0023015.1_g000007 |
| rosa_roxburghii | Rroxscaffold_3G00250190 |
| rosa_rugosa | Rorug07G0106700 |
| rosa_samantha | Rh7AG241800 Rh7BG236400 Rh7CG256400 |
| rosa_wichuraiana | Rw7G020480 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 4 cut(s) | 36, 39, 261, 273 |
| AcsI | RAATTY | 2 cut(s) | 19, 91 |
| AgsI | TTSAA | 2 cut(s) | 24, 308 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 155, 187 |
| AleI | CACNNNNGTG | 1 cut(s) | 273 |
| AluBI | AGCT | 5 cut(s) | 59, 157, 182, 220, 328 |
| AluI | AGCT | 5 cut(s) | 59, 157, 182, 220, 328 |
| Alw21I | GWGCWC | 1 cut(s) | 337 |
| AoxI | GGCC | 1 cut(s) | 195 |
| ApeKI | GCWGC | 1 cut(s) | 217 |
| ApoI | RAATTY | 2 cut(s) | 19, 91 |
| AspLEI | GCGC | 1 cut(s) | 217 |
| AsuHPI | GGTGA | 1 cut(s) | 53 |
| BbsI | GAAGAC | 1 cut(s) | 123 |
| Bbv12I | GWGCWC | 1 cut(s) | 337 |
| BbvI | GCAGC | 1 cut(s) | 229 |
| BceAI | ACGGC | 3 cut(s) | 24, 66, 71 |
| BfaI | CTAG | 1 cut(s) | 242 |
| BisI | GCNGC | 2 cut(s) | 37, 218 |
| BlsI | GCNGC | 2 cut(s) | 38, 219 |
| BmrI | ACTGGG | 1 cut(s) | 292 |
| BmsI | GCATC | 3 cut(s) | 20, 108, 235 |
| BmuI | ACTGGG | 1 cut(s) | 292 |
| BpiI | GAAGAC | 1 cut(s) | 123 |
| BpuEI | CTTGAG | 1 cut(s) | 210 |
| Bse1I | ACTGG | 2 cut(s) | 205, 298 |
| BseMII | CTCAG | 2 cut(s) | 152, 158 |
| BseNI | ACTGG | 2 cut(s) | 205, 298 |
| BseXI | GCAGC | 1 cut(s) | 229 |
| BshFI | GGCC | 1 cut(s) | 197 |
| BsiHKAI | GWGCWC | 1 cut(s) | 337 |
| BsnI | GGCC | 1 cut(s) | 197 |
| Bsp1286I | GDGCHC | 1 cut(s) | 337 |
| Bsp143I | GATC | 2 cut(s) | 43, 70 |
| BspACI | CCGC | 4 cut(s) | 36, 39, 261, 273 |
| BspANI | GGCC | 1 cut(s) | 197 |
| BspCNI | CTCAG | 2 cut(s) | 151, 157 |
| BspQI | GCTCTTC | 1 cut(s) | 342 |
| BsrI | ACTGG | 2 cut(s) | 205, 298 |
| BssMI | GATC | 2 cut(s) | 43, 70 |
| Bst4CI | ACNGT | 1 cut(s) | 292 |
| Bst6I | CTCTTC | 1 cut(s) | 342 |
| BstDEI | CTNAG | 3 cut(s) | 138, 144, 192 |
| BstHHI | GCGC | 1 cut(s) | 217 |
| BstKTI | GATC | 2 cut(s) | 46, 73 |
| BstMBI | GATC | 2 cut(s) | 43, 70 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 65, 149 |
| BstV1I | GCAGC | 1 cut(s) | 229 |
| BstV2I | GAAGAC | 1 cut(s) | 123 |
| BsuRI | GGCC | 1 cut(s) | 197 |
| BtsI | GCAGTG | 1 cut(s) | 96 |
| BtsIMutI | CAGTG | 3 cut(s) | 96, 185, 198 |
| CfoI | GCGC | 1 cut(s) | 217 |
| CseI | GACGC | 1 cut(s) | 110 |
| CviAII | CATG | 1 cut(s) | 313 |
| CviJI | RGCY | 8 cut(s) | 59, 86, 143, 157, 182, 197, 220, 328 |
| CviKI_1 | RGCY | 8 cut(s) | 59, 86, 143, 157, 182, 197, 220, 328 |
| DdeI | CTNAG | 3 cut(s) | 138, 144, 192 |
| DpnI | GATC | 2 cut(s) | 45, 72 |
| DpnII | GATC | 2 cut(s) | 43, 70 |
| Eam1104I | CTCTTC | 1 cut(s) | 342 |
| EarI | CTCTTC | 1 cut(s) | 342 |
| FaeI | CATG | 1 cut(s) | 316 |
| FaiI | YATR | 3 cut(s) | 252, 254, 314 |
| FatI | CATG | 1 cut(s) | 312 |
| Fnu4HI | GCNGC | 2 cut(s) | 37, 218 |
| Fsp4HI | GCNGC | 2 cut(s) | 37, 218 |
| FspBI | CTAG | 1 cut(s) | 242 |
| GlaI | GCGC | 1 cut(s) | 216 |
| GluI | GCNGC | 2 cut(s) | 37, 218 |
| HaeIII | GGCC | 1 cut(s) | 197 |
| HgaI | GACGC | 1 cut(s) | 110 |
| HhaI | GCGC | 1 cut(s) | 217 |
| Hin1II | CATG | 1 cut(s) | 316 |
| Hin6I | GCGC | 1 cut(s) | 215 |
| HinP1I | GCGC | 1 cut(s) | 215 |
| HindIII | AAGCTT | 1 cut(s) | 180 |
| HinfI | GANTC | 2 cut(s) | 30, 166 |
| HphI | GGTGA | 1 cut(s) | 53 |
| Hpy188I | TCNGA | 3 cut(s) | 16, 75, 117 |
| Hpy188III | TCNNGA | 3 cut(s) | 24, 160, 242 |
| Hpy99I | CGWCG | 2 cut(s) | 10, 68 |
| HpyAV | CCTTC | 1 cut(s) | 116 |
| HpyCH4III | ACNGT | 1 cut(s) | 292 |
| HpyCH4V | TGCA | 1 cut(s) | 268 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 65, 149 |
| HpyF3I | CTNAG | 3 cut(s) | 138, 144, 192 |
| Hsp92II | CATG | 1 cut(s) | 316 |
| HspAI | GCGC | 1 cut(s) | 215 |
| Kzo9I | GATC | 2 cut(s) | 43, 70 |
| LguI | GCTCTTC | 1 cut(s) | 342 |
| LmnI | GCTCC | 1 cut(s) | 162 |
| LpnPI | CCDG | 4 cut(s) | 125, 186, 191, 311 |
| Lsp1109I | GCAGC | 1 cut(s) | 229 |
| LweI | GCATC | 3 cut(s) | 20, 108, 235 |
| MaeI | CTAG | 1 cut(s) | 242 |
| MaeIII | GTNAC | 2 cut(s) | 292, 300 |
| MalI | GATC | 2 cut(s) | 45, 72 |
| MboI | GATC | 2 cut(s) | 43, 70 |
| MboII | GAAGA | 5 cut(s) | 101, 123, 126, 175, 329 |
| MhlI | GDGCHC | 1 cut(s) | 337 |
| MluCI | AATT | 2 cut(s) | 19, 91 |
| MnlI | CCTC | 2 cut(s) | 20, 234 |
| MslI | CAYNNNNRTG | 1 cut(s) | 273 |
| MspA1I | CMGCKG | 2 cut(s) | 36, 273 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 65, 149 |
| NdeII | GATC | 2 cut(s) | 43, 70 |
| NlaIII | CATG | 1 cut(s) | 316 |
| OliI | CACNNNNGTG | 1 cut(s) | 273 |
| PciSI | GCTCTTC | 1 cut(s) | 342 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 337 |
| PfeI | GAWTC | 2 cut(s) | 30, 166 |
| PkrI | GCNGC | 2 cut(s) | 38, 219 |
| RseI | CAYNNNNRTG | 1 cut(s) | 273 |
| SapI | GCTCTTC | 1 cut(s) | 342 |
| SatI | GCNGC | 2 cut(s) | 37, 218 |
| Sau3AI | GATC | 2 cut(s) | 43, 70 |
| SduI | GDGCHC | 1 cut(s) | 337 |
| SetI | ASST | 6 cut(s) | 61, 108, 159, 184, 222, 330 |
| SfaNI | GCATC | 3 cut(s) | 20, 108, 235 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 273 |
| SmlI | CTYRAG | 1 cut(s) | 225 |
| SmoI | CTYRAG | 1 cut(s) | 225 |
| Sse9I | AATT | 2 cut(s) | 19, 91 |
| SsiI | CCGC | 4 cut(s) | 36, 39, 261, 273 |
| SspI | AATATT | 1 cut(s) | 352 |
| SspMI | CTAG | 1 cut(s) | 242 |
| TaaI | ACNGT | 1 cut(s) | 292 |
| TaqI | TCGA | 2 cut(s) | 46, 340 |
| TasI | AATT | 2 cut(s) | 19, 91 |
| TauI | GCSGC | 1 cut(s) | 39 |
| TfiI | GAWTC | 2 cut(s) | 30, 166 |
| TscAI | CASTG | 3 cut(s) | 103, 192, 205 |
| TseI | GCWGC | 1 cut(s) | 217 |
| TspDTI | ATGAA | 3 cut(s) | 101, 225, 269 |
| TspRI | CASTG | 3 cut(s) | 103, 192, 205 |
| XapI | RAATTY | 2 cut(s) | 19, 91 |
| XbaI | TCTAGA | 1 cut(s) | 241 |
| XspI | CTAG | 1 cut(s) | 242 |