Prupe.5G042800_v2.0.a1

Tobamovirus multiplication protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0013281
Physical Location & Seq
Forward (+)
4716443 .. 4719263
2821 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G042800.1

Sequence Viewer

Length: 504 bp
ATGCGATGTTGGCTAATTTGGAAGAAAAGTTGTGAAGTTGGGCTATTTTTAGCTAAATTCTCAAAAAATAAAATAAAAACACGCTTCCGAGAGCTAGGAACACTGAGAAAAATGGCGAGCTCAACCGCAGGTGGAAGCAGCAGAGGGAATACGGCAAAAGCCCTGGTGTCTGATCAGATCTCTCAGGCCATACTGTCCACTTCCAACCTCCTCCACCTCATGCAACAATCTTCTCCTTCCCAGGCCCAACTGATAAGGCTTCCAAAGAACCTTTTGGTCAAAACATCTACAATCAAGCATACCGGACAATTGTTGGAGCAGATGCCTCGAGTAGTTTCATCTCTGGATGCACATATGGAAAGTGGGTTACAAAGTGTTCCTCATCTGCAAACTGTAATCCAATTACTCGAAAACATGGAAAGCTGCCAACTTAGTTCTCTCTCTCAAGCTAAAGTCCTTCCTGAGGAACATGAGGTGGAAAATCAACCTCCAAAGGGGGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0016032 GO:0019058 GO:0019079 GO:0044403 GO:0044419 GO:0046786 GO:0051704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BORCS7

Protein Analysis

168

Amino Acids

18.43

Weight (kDa)

9.72

Isoelectric Point (pI)

53.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013281)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32370 AT1G32370 AT1G32370 AT1G32370
fragaria_vesca FvH4_5g21430 FvH4_5g21430
malus_domestica MD06G1029000.v1.1
prunus_persica Prupe.5G042800_v2.0.a1
pyrus_communis pycom06g02310
rosa_chinensis RchiOBHm_Chr7g0208861
rosa_laevigata RLG00000003191
rosa_multiflora Rmu_sc0023015.1_g000007
rosa_roxburghii Rroxscaffold_3G00250190
rosa_rugosa Rorug07G0106700
rosa_samantha Rh7AG241800 Rh7BG236400 Rh7CG256400
rosa_wichuraiana Rw7G020480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 119
Acc36I ACCTGC 1 cut(s) 119
AciI CCGC 1 cut(s) 126
AcsI RAATTY 1 cut(s) 56
AfiI CCNNNNNNNGG 3 cut(s) 463, 494, 497
AjnI CCWGG 2 cut(s) 162, 240
AluBI AGCT 5 cut(s) 53, 94, 120, 423, 449
AluI AGCT 5 cut(s) 53, 94, 120, 423, 449
Alw21I GWGCWC 1 cut(s) 122
Ama87I CYCGRG 1 cut(s) 327
AoxI GGCC 2 cut(s) 186, 243
ApeKI GCWGC 2 cut(s) 138, 423
ApoI RAATTY 1 cut(s) 56
AspS9I GGNCC 1 cut(s) 244
AvaI CYCGRG 1 cut(s) 327
AxyI CCTNAGG 1 cut(s) 462
BanII GRGCYC 1 cut(s) 122
Bbv12I GWGCWC 1 cut(s) 122
BbvI GCAGC 2 cut(s) 150, 410
BceAI ACGGC 1 cut(s) 168
BcgI CGANNNNNNTGC 2 cut(s) 308, 342
BciT130I CCWGG 2 cut(s) 164, 242
BclI TGATCA 1 cut(s) 172
BfaI CTAG 1 cut(s) 95
BfuAI ACCTGC 1 cut(s) 119
BglII AGATCT 1 cut(s) 177
BisI GCNGC 2 cut(s) 139, 424
BlsI GCNGC 2 cut(s) 140, 425
Bme1390I CCNGG 2 cut(s) 164, 242
BmeT110I CYCGRG 1 cut(s) 327
BmgT120I GGNCC 1 cut(s) 244
BmrFI CCNGG 2 cut(s) 164, 242
BmsI GCATC 2 cut(s) 312, 337
BpuEI CTTGAG 1 cut(s) 429
BsaJI CCNNGG 2 cut(s) 162, 240
BsaWI WCCGGW 1 cut(s) 302
Bsc4I CCNNNNNNNGG 3 cut(s) 463, 494, 497
Bse21I CCTNAGG 1 cut(s) 462
BseBI CCWGG 2 cut(s) 164, 242
BseDI CCNNGG 2 cut(s) 162, 240
BseGI GGATG 1 cut(s) 352
BseLI CCNNNNNNNGG 3 cut(s) 463, 494, 497
BseMII CTCAG 3 cut(s) 95, 197, 453
BseRI GAGGAG 1 cut(s) 200
BseXI GCAGC 2 cut(s) 150, 410
BshFI GGCC 2 cut(s) 188, 245
BsiHKAI GWGCWC 1 cut(s) 122
BsiHKCI CYCGRG 1 cut(s) 327
BsiSI CCGG 1 cut(s) 303
BslI CCNNNNNNNGG 3 cut(s) 463, 494, 497
BsnI GGCC 2 cut(s) 188, 245
BsoBI CYCGRG 1 cut(s) 327
Bsp1286I GDGCHC 1 cut(s) 122
Bsp143I GATC 2 cut(s) 172, 177
BspACI CCGC 1 cut(s) 126
BspANI GGCC 2 cut(s) 188, 245
BspCNI CTCAG 3 cut(s) 96, 196, 454
BspMI ACCTGC 1 cut(s) 119
BssECI CCNNGG 2 cut(s) 162, 240
BssMI GATC 2 cut(s) 172, 177
Bst2UI CCWGG 2 cut(s) 164, 242
Bst4CI ACNGT 2 cut(s) 195, 394
BstC8I GCNNGC 1 cut(s) 118
BstDEI CTNAG 4 cut(s) 104, 183, 431, 462
BstENI CCTNNNNNAGG 1 cut(s) 461
BstF5I GGATG 1 cut(s) 352
BstKTI GATC 2 cut(s) 175, 180
BstMBI GATC 2 cut(s) 172, 177
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNI CCWGG 2 cut(s) 164, 242
BstSCI CCNGG 2 cut(s) 162, 240
BstV1I GCAGC 2 cut(s) 150, 410
BstX2I RGATCY 1 cut(s) 177
BstYI RGATCY 1 cut(s) 177
Bsu36I CCTNAGG 1 cut(s) 462
BsuRI GGCC 2 cut(s) 188, 245
BtgZI GCGATG 1 cut(s) 19
BtsCI GGATG 1 cut(s) 352
BtsIMutI CAGTG 1 cut(s) 101
BveI ACCTGC 1 cut(s) 119
Cac8I GCNNGC 1 cut(s) 118
Cfr13I GGNCC 1 cut(s) 244
CviAII CATG 3 cut(s) 220, 415, 470
DdeI CTNAG 4 cut(s) 104, 183, 431, 462
DpnI GATC 2 cut(s) 174, 179
DpnII GATC 2 cut(s) 172, 177
Ecl136II GAGCTC 1 cut(s) 120
Eco24I GRGCYC 1 cut(s) 122
Eco53kI GAGCTC 1 cut(s) 120
Eco81I CCTNAGG 1 cut(s) 462
Eco88I CYCGRG 1 cut(s) 327
EcoICRI GAGCTC 1 cut(s) 120
EcoNI CCTNNNNNAGG 1 cut(s) 461
EcoRII CCWGG 2 cut(s) 162, 240
EcoT38I GRGCYC 1 cut(s) 122
FaeI CATG 3 cut(s) 223, 418, 473
FaiI YATR 7 cut(s) 191, 221, 300, 354, 356, 416, 471
FatI CATG 3 cut(s) 219, 414, 469
FauNDI CATATG 1 cut(s) 354
FbaI TGATCA 1 cut(s) 172
Fnu4HI GCNGC 2 cut(s) 139, 424
FokI GGATG 1 cut(s) 359
FriOI GRGCYC 1 cut(s) 122
Fsp4HI GCNGC 2 cut(s) 139, 424
FspBI CTAG 1 cut(s) 95
GluI GCNGC 2 cut(s) 139, 424
HaeIII GGCC 2 cut(s) 188, 245
HapII CCGG 1 cut(s) 303
Hin1II CATG 3 cut(s) 223, 418, 473
HpaII CCGG 1 cut(s) 303
Hpy166II GTNNAC 1 cut(s) 198
Hpy188I TCNGA 3 cut(s) 89, 172, 177
Hpy188III TCNNGA 2 cut(s) 344, 461
Hpy8I GTNNAC 1 cut(s) 198
HpyAV CCTTC 2 cut(s) 246, 467
HpyCH4III ACNGT 2 cut(s) 195, 394
HpyCH4V TGCA 3 cut(s) 223, 350, 388
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 4 cut(s) 104, 183, 431, 462
Hsp92II CATG 3 cut(s) 223, 418, 473
Ksp22I TGATCA 1 cut(s) 172
Kzo9I GATC 2 cut(s) 172, 177
LmnI GCTCC 1 cut(s) 316
LpnPI CCDG 9 cut(s) 114, 149, 170, 176, 227, 254, 316, 329, 474
Lsp1109I GCAGC 2 cut(s) 150, 410
LweI GCATC 2 cut(s) 312, 337
MaeI CTAG 1 cut(s) 95
MaeIII GTNAC 1 cut(s) 366
MalI GATC 2 cut(s) 174, 179
MboI GATC 2 cut(s) 172, 177
MboII GAAGA 2 cut(s) 34, 222
MfeI CAATTG 1 cut(s) 308
MflI RGATCY 1 cut(s) 177
MhlI GDGCHC 1 cut(s) 122
MluCI AATT 4 cut(s) 15, 56, 308, 401
MmeI TCCRAC 2 cut(s) 228, 294
MnlI CCTC 9 cut(s) 137, 218, 221, 227, 336, 390, 457, 466, 498
MspI CCGG 1 cut(s) 303
MspR9I CCNGG 2 cut(s) 164, 242
MunI CAATTG 1 cut(s) 308
MvaI CCWGG 2 cut(s) 164, 242
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeI CATATG 1 cut(s) 354
NdeII GATC 2 cut(s) 172, 177
NlaIII CATG 3 cut(s) 223, 418, 473
PaeR7I CTCGAG 1 cut(s) 327
PaqCI CACCTGC 1 cut(s) 119
PkrI GCNGC 2 cut(s) 140, 425
Psp124BI GAGCTC 1 cut(s) 122
Psp6I CCWGG 2 cut(s) 162, 240
PspGI CCWGG 2 cut(s) 162, 240
PspPI GGNCC 1 cut(s) 244
PspXI VCTCGAGB 1 cut(s) 327
PsuI RGATCY 1 cut(s) 177
SacI GAGCTC 1 cut(s) 122
SatI GCNGC 2 cut(s) 139, 424
Sau3AI GATC 2 cut(s) 172, 177
Sau96I GGNCC 1 cut(s) 244
ScrFI CCNGG 2 cut(s) 164, 242
SduI GDGCHC 1 cut(s) 122
SfaNI GCATC 2 cut(s) 312, 337
Sfr274I CTCGAG 1 cut(s) 327
SlaI CTCGAG 1 cut(s) 327
SmlI CTYRAG 2 cut(s) 327, 444
SmoI CTYRAG 2 cut(s) 327, 444
Sse9I AATT 4 cut(s) 15, 56, 308, 401
SsiI CCGC 1 cut(s) 126
SspMI CTAG 1 cut(s) 95
SstI GAGCTC 1 cut(s) 122
StyD4I CCNGG 2 cut(s) 162, 240
TaaI ACNGT 2 cut(s) 195, 394
TaqI TCGA 2 cut(s) 328, 408
TasI AATT 4 cut(s) 15, 56, 308, 401
TscAI CASTG 1 cut(s) 108
TseI GCWGC 2 cut(s) 138, 423
TspDTI ATGAA 1 cut(s) 327
TspRI CASTG 1 cut(s) 108
XagI CCTNNNNNAGG 1 cut(s) 461
XapI RAATTY 1 cut(s) 56
XhoI CTCGAG 1 cut(s) 327
XspI CTAG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.