Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0013281

Physical Location & Seq

Genomic Coordinates Reverse (-)

24875426 .. 24878393

Gene Structure 2968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG256400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGTTATGTTTTCTAATTTGGCCAAAAATCCGACGCTCGACACAGGTAGAGAAGAATGGCGAGCTCAACCTCCGGCGGAAGAAGCAGCAGCAGAGAGAACACGGCGAAAAACATGGTCTCCGATCAGATTTCTCAGGCCGTACTATCCACTTCCAACCTCCTCCACCTCATGCAGCAGTCCTCGCCTTCTCAGACCCAACTGATAAAGCTTCCAAAGAACCTTTTGCTCAAATCATCTACAATCAAGAATACTGGACATTTATTGGAGCAGATGCCTCAAGTCATTTCATCTCTGGATGCACATATGGAAACTGGGTTGCAAAGTCTGCCTCATCTGCAAACTGTAATCCAACTACTTGCAAATATGGAAAGCTGCCGATTCAGTTCTCTCTCACAAGCTCATGTCCTTCAAGAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

15.63

Weight (kDa)

9.48

Isoelectric Point (pI)

39.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32370 AT1G32370 AT1G32370 AT1G32370
fragaria_vesca	FvH4_5g21430 FvH4_5g21430
malus_domestica	MD06G1029000.v1.1
prunus_persica	Prupe.5G042800_v2.0.a1
pyrus_communis	pycom06g02310
rosa_chinensis	RchiOBHm_Chr7g0208861
rosa_laevigata	RLG00000003191
rosa_multiflora	Rmu_sc0023015.1_g000007
rosa_roxburghii	Rroxscaffold_3G00250190
rosa_rugosa	Rorug07G0106700
rosa_samantha	Rh7AG241800 Rh7BG236400 Rh7CG256400
rosa_wichuraiana	Rw7G020480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	76
AcoI	YGGCCR	1 cut(s)	20
AfaI	GTAC	1 cut(s)	142
AfiI	CCNNNNNNNGG	1 cut(s)	413
AgsI	TTSAA	1 cut(s)	411
AluBI	AGCT	4 cut(s)	64, 209, 373, 399
AluI	AGCT	4 cut(s)	64, 209, 373, 399
Alw21I	GWGCWC	1 cut(s)	66
Alw26I	GTCTC	1 cut(s)	122
AoxI	GGCC	2 cut(s)	20, 136
ApeKI	GCWGC	4 cut(s)	85, 88, 173, 373
BalI	TGGCCA	1 cut(s)	22
BanII	GRGCYC	1 cut(s)	66
Bbv12I	GWGCWC	1 cut(s)	66
BbvI	GCAGC	4 cut(s)	97, 100, 185, 360
BceAI	ACGGC	2 cut(s)	118, 123
BcoDI	GTCTC	1 cut(s)	122
BisI	GCNGC	4 cut(s)	86, 89, 174, 374
BlsI	GCNGC	4 cut(s)	87, 90, 175, 375
BmrI	ACTGGG	1 cut(s)	322
BmsI	GCATC	2 cut(s)	262, 287
BmuI	ACTGGG	1 cut(s)	322
BpuEI	CTTGAG	1 cut(s)	262
BsaI	GGTCTC	1 cut(s)	122
BsaXI	ACNNNNNCTCC	2 cut(s)	102, 132
Bsc4I	CCNNNNNNNGG	1 cut(s)	413
Bse1I	ACTGG	2 cut(s)	257, 317
BseGI	GGATG	1 cut(s)	302
BseLI	CCNNNNNNNGG	1 cut(s)	413
BseMII	CTCAG	2 cut(s)	147, 204
BseNI	ACTGG	2 cut(s)	257, 317
BseRI	GAGGAG	1 cut(s)	150
BseXI	GCAGC	4 cut(s)	97, 100, 185, 360
BshFI	GGCC	2 cut(s)	22, 138
BsiHKAI	GWGCWC	1 cut(s)	66
BsiSI	CCGG	1 cut(s)	73
BslI	CCNNNNNNNGG	1 cut(s)	413
BsmAI	GTCTC	1 cut(s)	122
BsnI	GGCC	2 cut(s)	22, 138
Bso31I	GGTCTC	1 cut(s)	122
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp143I	GATC	1 cut(s)	122
BspACI	CCGC	1 cut(s)	76
BspANI	GGCC	2 cut(s)	22, 138
BspCNI	CTCAG	2 cut(s)	146, 203
BspTNI	GGTCTC	1 cut(s)	122
BsrI	ACTGG	2 cut(s)	257, 317
BssMI	GATC	1 cut(s)	122
Bst4CI	ACNGT	1 cut(s)	344
BstAPI	GCANNNNNTGC	1 cut(s)	326
BstC8I	GCNNGC	1 cut(s)	62
BstDEI	CTNAG	2 cut(s)	133, 190
BstENI	CCTNNNNNAGG	1 cut(s)	411
BstF5I	GGATG	1 cut(s)	302
BstKTI	GATC	1 cut(s)	125
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	1 cut(s)	122
BstMWI	GCNNNNNNNGC	4 cut(s)	82, 182, 326, 335
BstV1I	GCAGC	4 cut(s)	97, 100, 185, 360
BsuRI	GGCC	2 cut(s)	22, 138
BtsCI	GGATG	1 cut(s)	302
Cac8I	GCNNGC	1 cut(s)	62
CseI	GACGC	1 cut(s)	42
Csp6I	GTAC	1 cut(s)	141
CviAII	CATG	3 cut(s)	113, 170, 402
CviJI	RGCY	6 cut(s)	22, 64, 138, 209, 373, 399
CviKI_1	RGCY	6 cut(s)	22, 64, 138, 209, 373, 399
CviQI	GTAC	1 cut(s)	141
DdeI	CTNAG	2 cut(s)	133, 190
DpnI	GATC	1 cut(s)	124
DpnII	GATC	1 cut(s)	122
EaeI	YGGCCR	1 cut(s)	20
EciI	GGCGGA	1 cut(s)	91
Ecl136II	GAGCTC	1 cut(s)	64
Eco24I	GRGCYC	1 cut(s)	66
Eco31I	GGTCTC	1 cut(s)	122
Eco53kI	GAGCTC	1 cut(s)	64
EcoICRI	GAGCTC	1 cut(s)	64
EcoNI	CCTNNNNNAGG	1 cut(s)	411
EcoT38I	GRGCYC	1 cut(s)	66
FaeI	CATG	3 cut(s)	116, 173, 405
FaiI	YATR	7 cut(s)	7, 114, 171, 304, 306, 366, 403
FatI	CATG	3 cut(s)	112, 169, 401
FauNDI	CATATG	1 cut(s)	304
Fnu4HI	GCNGC	4 cut(s)	86, 89, 174, 374
FokI	GGATG	1 cut(s)	309
FriOI	GRGCYC	1 cut(s)	66
Fsp4HI	GCNGC	4 cut(s)	86, 89, 174, 374
GluI	GCNGC	4 cut(s)	86, 89, 174, 374
HaeIII	GGCC	2 cut(s)	22, 138
HapII	CCGG	1 cut(s)	73
HgaI	GACGC	1 cut(s)	42
Hin1II	CATG	3 cut(s)	116, 173, 405
HindIII	AAGCTT	1 cut(s)	207
HinfI	GANTC	1 cut(s)	379
HpaII	CCGG	1 cut(s)	73
Hpy188I	TCNGA	4 cut(s)	32, 122, 127, 193
Hpy188III	TCNNGA	3 cut(s)	245, 294, 411
Hpy99I	CGWCG	1 cut(s)	36
HpyAV	CCTTC	2 cut(s)	196, 417
HpyCH4III	ACNGT	1 cut(s)	344
HpyCH4V	TGCA	5 cut(s)	173, 300, 320, 338, 360
HpyF10VI	GCNNNNNNNGC	4 cut(s)	82, 182, 326, 335
HpyF3I	CTNAG	2 cut(s)	133, 190
Hsp92II	CATG	3 cut(s)	116, 173, 405
Kzo9I	GATC	1 cut(s)	122
LmnI	GCTCC	1 cut(s)	266
LpnPI	CCDG	6 cut(s)	29, 86, 120, 238, 279, 298
Lsp1109I	GCAGC	4 cut(s)	97, 100, 185, 360
LweI	GCATC	2 cut(s)	262, 287
MalI	GATC	1 cut(s)	124
MboI	GATC	1 cut(s)	122
MboII	GAAGA	2 cut(s)	64, 91
MhlI	GDGCHC	1 cut(s)	66
MlsI	TGGCCA	1 cut(s)	22
MluCI	AATT	1 cut(s)	15
MluNI	TGGCCA	1 cut(s)	22
MmeI	TCCRAC	3 cut(s)	55, 178, 374
MnlI	CCTC	8 cut(s)	80, 168, 171, 177, 191, 286, 340, 407
Mox20I	TGGCCA	1 cut(s)	22
MscI	TGGCCA	1 cut(s)	22
MseI	TTAA	1 cut(s)	418
Msp20I	TGGCCA	1 cut(s)	22
MspI	CCGG	1 cut(s)	73
MwoI	GCNNNNNNNGC	4 cut(s)	82, 182, 326, 335
NdeI	CATATG	1 cut(s)	304
NdeII	GATC	1 cut(s)	122
NlaIII	CATG	3 cut(s)	116, 173, 405
PfeI	GAWTC	1 cut(s)	379
PkrI	GCNGC	4 cut(s)	87, 90, 175, 375
Psp124BI	GAGCTC	1 cut(s)	66
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
SacI	GAGCTC	1 cut(s)	66
SaqAI	TTAA	1 cut(s)	418
SatI	GCNGC	4 cut(s)	86, 89, 174, 374
Sau3AI	GATC	1 cut(s)	122
SduI	GDGCHC	1 cut(s)	66
SfaNI	GCATC	2 cut(s)	262, 287
SmlI	CTYRAG	1 cut(s)	277
SmoI	CTYRAG	1 cut(s)	277
Sse9I	AATT	1 cut(s)	15
SsiI	CCGC	1 cut(s)	76
SstI	GAGCTC	1 cut(s)	66
TaaI	ACNGT	1 cut(s)	344
TaqI	TCGA	1 cut(s)	38
TasI	AATT	1 cut(s)	15
TfiI	GAWTC	1 cut(s)	379
Tru1I	TTAA	1 cut(s)	418
Tru9I	TTAA	1 cut(s)	418
TseI	GCWGC	4 cut(s)	85, 88, 173, 373
TspDTI	ATGAA	1 cut(s)	277
XagI	CCTNNNNNAGG	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.