FvH4_5g21430

Tobamovirus multiplication protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0013281
Physical Location & Seq
Reverse (-)
12901793 .. 12906636
4844 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g21430.t2

Sequence Viewer

Length: 405 bp
ATGGCGAGCTCAACATCCGGCGGAAGAAGCAGCAGCAGCAGCAGAGAGAACACGGCAAAAAACATGGTCTCCGATCAGATATCTCAGGCCGTACTATCCACTTCCAATCTCCTCCACCTCATGCAGCAGTCCTCTCCTTCCCAGGCCCAATTGATAAAGCTTCCAAAAAACCTTTTGCTCAAATCATCTGCAATTCAGAATACTGGACATTTATTGGAGCAGATGCCTCGAGTCATTTCATCTCTGGATGCACATATGGAAACTGGGCTGCAAAGTCTACCTCATCTGCAAACTGTAATTCAACTACTTGCAAATATGGAAAGCTGCCAGCTTACTTCTCTCTCAAAACCTCATGTCCTTCAAGAGGAACATGAGGGAGAAAACCAATCTTCAAACGTGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0016032 GO:0019058 GO:0019079 GO:0044403 GO:0044419 GO:0046786 GO:0051704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BORCS7

Protein Analysis

135

Amino Acids

14.52

Weight (kDa)

6.04

Isoelectric Point (pI)

61.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013281)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32370 AT1G32370 AT1G32370 AT1G32370
fragaria_vesca FvH4_5g21430 FvH4_5g21430
malus_domestica MD06G1029000.v1.1
prunus_persica Prupe.5G042800_v2.0.a1
pyrus_communis pycom06g02310
rosa_chinensis RchiOBHm_Chr7g0208861
rosa_laevigata RLG00000003191
rosa_multiflora Rmu_sc0023015.1_g000007
rosa_roxburghii Rroxscaffold_3G00250190
rosa_rugosa Rorug07G0106700
rosa_samantha Rh7AG241800 Rh7BG236400 Rh7CG256400
rosa_wichuraiana Rw7G020480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 277
AciI CCGC 1 cut(s) 21
AfaI GTAC 1 cut(s) 93
AfiI CCNNNNNNNGG 1 cut(s) 364
AgsI TTSAA 3 cut(s) 302, 362, 393
AjnI CCWGG 1 cut(s) 141
AluBI AGCT 4 cut(s) 9, 160, 324, 331
AluI AGCT 4 cut(s) 9, 160, 324, 331
Alw21I GWGCWC 1 cut(s) 11
Alw26I GTCTC 1 cut(s) 73
Ama87I CYCGRG 1 cut(s) 228
AoxI GGCC 2 cut(s) 87, 144
ApeKI GCWGC 7 cut(s) 30, 33, 36, 39, 124, 268, 324
AspS9I GGNCC 1 cut(s) 145
AvaI CYCGRG 1 cut(s) 228
BanII GRGCYC 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 11
BbvI GCAGC 7 cut(s) 42, 45, 48, 51, 136, 255, 311
BceAI ACGGC 2 cut(s) 69, 74
BcgI CGANNNNNNTGC 2 cut(s) 209, 243
BciT130I CCWGG 1 cut(s) 143
BcoDI GTCTC 1 cut(s) 73
BisI GCNGC 7 cut(s) 31, 34, 37, 40, 125, 269, 325
BlsI GCNGC 7 cut(s) 32, 35, 38, 41, 126, 270, 326
Bme1390I CCNGG 1 cut(s) 143
BmeT110I CYCGRG 1 cut(s) 228
BmgT120I GGNCC 1 cut(s) 145
BmrFI CCNGG 1 cut(s) 143
BmrI ACTGGG 1 cut(s) 273
BmsI GCATC 2 cut(s) 213, 238
BmuI ACTGGG 1 cut(s) 273
BsaI GGTCTC 1 cut(s) 73
BsaJI CCNNGG 1 cut(s) 141
BsaXI ACNNNNNCTCC 2 cut(s) 53, 83
Bsc4I CCNNNNNNNGG 1 cut(s) 364
Bse1I ACTGG 2 cut(s) 208, 268
BseBI CCWGG 1 cut(s) 143
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 2 cut(s) 14, 253
BseLI CCNNNNNNNGG 1 cut(s) 364
BseMII CTCAG 1 cut(s) 98
BseNI ACTGG 2 cut(s) 208, 268
BseRI GAGGAG 1 cut(s) 101
BseXI GCAGC 7 cut(s) 42, 45, 48, 51, 136, 255, 311
BshFI GGCC 2 cut(s) 89, 146
BsiHKAI GWGCWC 1 cut(s) 11
BsiHKCI CYCGRG 1 cut(s) 228
BsiSI CCGG 1 cut(s) 18
BslI CCNNNNNNNGG 1 cut(s) 364
BsmAI GTCTC 1 cut(s) 73
BsnI GGCC 2 cut(s) 89, 146
Bso31I GGTCTC 1 cut(s) 73
BsoBI CYCGRG 1 cut(s) 228
Bsp1286I GDGCHC 1 cut(s) 11
Bsp143I GATC 1 cut(s) 73
BspACI CCGC 1 cut(s) 21
BspANI GGCC 2 cut(s) 89, 146
BspCNI CTCAG 1 cut(s) 97
BspTNI GGTCTC 1 cut(s) 73
BsrI ACTGG 2 cut(s) 208, 268
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 1 cut(s) 73
Bst2UI CCWGG 1 cut(s) 143
Bst4CI ACNGT 1 cut(s) 295
BstC8I GCNNGC 2 cut(s) 7, 329
BstDEI CTNAG 1 cut(s) 84
BstENI CCTNNNNNAGG 1 cut(s) 362
BstF5I GGATG 2 cut(s) 14, 253
BstKTI GATC 1 cut(s) 76
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 1 cut(s) 73
BstMWI GCNNNNNNNGC 3 cut(s) 27, 36, 39
BstNI CCWGG 1 cut(s) 143
BstSCI CCNGG 1 cut(s) 141
BstV1I GCAGC 7 cut(s) 42, 45, 48, 51, 136, 255, 311
BsuRI GGCC 2 cut(s) 89, 146
BtsCI GGATG 2 cut(s) 14, 253
Cac8I GCNNGC 2 cut(s) 7, 329
Cfr13I GGNCC 1 cut(s) 145
Csp6I GTAC 1 cut(s) 92
CviAII CATG 4 cut(s) 64, 121, 353, 371
CviJI RGCY 7 cut(s) 9, 89, 146, 160, 268, 324, 331
CviKI_1 RGCY 7 cut(s) 9, 89, 146, 160, 268, 324, 331
CviQI GTAC 1 cut(s) 92
DdeI CTNAG 1 cut(s) 84
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
EciI GGCGGA 1 cut(s) 36
Ecl136II GAGCTC 1 cut(s) 9
Eco24I GRGCYC 1 cut(s) 11
Eco31I GGTCTC 1 cut(s) 73
Eco32I GATATC 1 cut(s) 81
Eco53kI GAGCTC 1 cut(s) 9
Eco88I CYCGRG 1 cut(s) 228
EcoICRI GAGCTC 1 cut(s) 9
EcoNI CCTNNNNNAGG 1 cut(s) 362
EcoRII CCWGG 1 cut(s) 141
EcoRV GATATC 1 cut(s) 81
EcoT38I GRGCYC 1 cut(s) 11
FaeI CATG 4 cut(s) 67, 124, 356, 374
FaiI YATR 7 cut(s) 65, 122, 255, 257, 317, 354, 372
FatI CATG 4 cut(s) 63, 120, 352, 370
FauNDI CATATG 1 cut(s) 255
FblI GTMKAC 1 cut(s) 277
Fnu4HI GCNGC 7 cut(s) 31, 34, 37, 40, 125, 269, 325
FokI GGATG 1 cut(s) 260
FriOI GRGCYC 1 cut(s) 11
Fsp4HI GCNGC 7 cut(s) 31, 34, 37, 40, 125, 269, 325
GluI GCNGC 7 cut(s) 31, 34, 37, 40, 125, 269, 325
HaeIII GGCC 2 cut(s) 89, 146
HapII CCGG 1 cut(s) 18
Hin1II CATG 4 cut(s) 67, 124, 356, 374
HindIII AAGCTT 1 cut(s) 158
HinfI GANTC 1 cut(s) 231
HpaII CCGG 1 cut(s) 18
Hpy166II GTNNAC 1 cut(s) 278
Hpy188I TCNGA 3 cut(s) 73, 78, 198
Hpy188III TCNNGA 2 cut(s) 245, 362
Hpy8I GTNNAC 1 cut(s) 278
HpyAV CCTTC 2 cut(s) 147, 368
HpyCH4III ACNGT 1 cut(s) 295
HpyCH4IV ACGT 1 cut(s) 396
HpyCH4V TGCA 6 cut(s) 124, 191, 251, 271, 289, 311
HpyF10VI GCNNNNNNNGC 3 cut(s) 27, 36, 39
HpyF3I CTNAG 1 cut(s) 84
HpySE526I ACGT 1 cut(s) 396
Hsp92II CATG 4 cut(s) 67, 124, 356, 374
Kzo9I GATC 1 cut(s) 73
LmnI GCTCC 1 cut(s) 217
LpnPI CCDG 8 cut(s) 31, 71, 128, 155, 189, 230, 249, 341
Lsp1109I GCAGC 7 cut(s) 42, 45, 48, 51, 136, 255, 311
LweI GCATC 2 cut(s) 213, 238
MaeII ACGT 1 cut(s) 396
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MboII GAAGA 2 cut(s) 36, 381
MfeI CAATTG 1 cut(s) 149
MhlI GDGCHC 1 cut(s) 11
MluCI AATT 3 cut(s) 149, 192, 297
MlyI GAGTC 1 cut(s) 240
MnlI CCTC 8 cut(s) 122, 128, 142, 237, 291, 358, 360, 367
MspI CCGG 1 cut(s) 18
MspR9I CCNGG 1 cut(s) 143
MunI CAATTG 1 cut(s) 149
MvaI CCWGG 1 cut(s) 143
MwoI GCNNNNNNNGC 3 cut(s) 27, 36, 39
NdeI CATATG 1 cut(s) 255
NdeII GATC 1 cut(s) 73
NlaIII CATG 4 cut(s) 67, 124, 356, 374
PaeR7I CTCGAG 1 cut(s) 228
PkrI GCNGC 7 cut(s) 32, 35, 38, 41, 126, 270, 326
PleI GAGTC 1 cut(s) 239
PpsI GAGTC 1 cut(s) 239
Psp124BI GAGCTC 1 cut(s) 11
Psp6I CCWGG 1 cut(s) 141
PspGI CCWGG 1 cut(s) 141
PspPI GGNCC 1 cut(s) 145
PspXI VCTCGAGB 1 cut(s) 228
RsaI GTAC 1 cut(s) 93
RsaNI GTAC 1 cut(s) 92
SacI GAGCTC 1 cut(s) 11
SatI GCNGC 7 cut(s) 31, 34, 37, 40, 125, 269, 325
Sau3AI GATC 1 cut(s) 73
Sau96I GGNCC 1 cut(s) 145
SchI GAGTC 1 cut(s) 240
ScrFI CCNGG 1 cut(s) 143
SduI GDGCHC 1 cut(s) 11
SetI ASST 9 cut(s) 11, 120, 162, 174, 283, 326, 333, 352, 399
SfaNI GCATC 2 cut(s) 213, 238
Sfr274I CTCGAG 1 cut(s) 228
SlaI CTCGAG 1 cut(s) 228
SmlI CTYRAG 1 cut(s) 228
SmoI CTYRAG 1 cut(s) 228
Sse9I AATT 3 cut(s) 149, 192, 297
SsiI CCGC 1 cut(s) 21
SstI GAGCTC 1 cut(s) 11
StyD4I CCNGG 1 cut(s) 141
TaaI ACNGT 1 cut(s) 295
TaiI ACGT 1 cut(s) 399
TaqI TCGA 1 cut(s) 229
TasI AATT 3 cut(s) 149, 192, 297
TseI GCWGC 7 cut(s) 30, 33, 36, 39, 124, 268, 324
TspDTI ATGAA 1 cut(s) 228
XagI CCTNNNNNAGG 1 cut(s) 362
XhoI CTCGAG 1 cut(s) 228
XmiI GTMKAC 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.