Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0013281

Physical Location & Seq

Genomic Coordinates Reverse (-)

3448464 .. 3451393

Gene Structure 2930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1029000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGCGAGCTCGACAGGAGGTAGAAACAGCAGAGGGAATACAGCAAAAGCCTTGGTATCTGATCAGATATCTCAGGCCATACTGTCCACTTCCAACCTCCTCCACCTCATGCAGCAATCATCTCCTTCCCAGGCCCAACTGATAAAGCTTCCAAAGAACCTTTTGGTCAAAACATCTACAATTAAGAATACTGGACAGTTGTTGGGACAGATGCCTCGAGTGATTTCATCCCTCGATGCACATATGGAAAACGGGTTACAAAGTGTTCCTCATCTGCAAACTGTAATCCAGTTACTTGAAAACATGGAAAGCTGCCAACTTAGTTCTCTATCTCAAGCTCATGTCCTTCAAGAGGAGCATGAGGTGGAAAACGCAAAAGTGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0016032 GO:0019058 GO:0019079 GO:0044403 GO:0044419 GO:0046786 GO:0051704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BORCS7

Protein Analysis

129

Amino Acids

13.79

Weight (kDa)

6.96

Isoelectric Point (pI)

49.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32370 AT1G32370 AT1G32370 AT1G32370
fragaria_vesca	FvH4_5g21430 FvH4_5g21430
malus_domestica	MD06G1029000.v1.1
prunus_persica	Prupe.5G042800_v2.0.a1
pyrus_communis	pycom06g02310
rosa_chinensis	RchiOBHm_Chr7g0208861
rosa_laevigata	RLG00000003191
rosa_multiflora	Rmu_sc0023015.1_g000007
rosa_roxburghii	Rroxscaffold_3G00250190
rosa_rugosa	Rorug07G0106700
rosa_samantha	Rh7AG241800 Rh7BG236400 Rh7CG256400
rosa_wichuraiana	Rw7G020480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	352
AgsI	TTSAA	2 cut(s)	299, 350
AjnI	CCWGG	1 cut(s)	129
AluBI	AGCT	4 cut(s)	9, 148, 312, 338
AluI	AGCT	4 cut(s)	9, 148, 312, 338
Alw21I	GWGCWC	1 cut(s)	11
Ama87I	CYCGRG	1 cut(s)	216
AoxI	GGCC	2 cut(s)	75, 132
ApeKI	GCWGC	2 cut(s)	112, 312
AspS9I	GGNCC	1 cut(s)	133
AvaI	CYCGRG	1 cut(s)	216
BanII	GRGCYC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	11
BbvI	GCAGC	2 cut(s)	124, 299
BciT130I	CCWGG	1 cut(s)	131
BclI	TGATCA	1 cut(s)	61
BisI	GCNGC	2 cut(s)	113, 313
BlsI	GCNGC	2 cut(s)	114, 314
Bme1390I	CCNGG	1 cut(s)	131
BmeT110I	CYCGRG	1 cut(s)	216
BmgT120I	GGNCC	1 cut(s)	133
BmrFI	CCNGG	1 cut(s)	131
BmsI	GCATC	2 cut(s)	201, 226
BpuEI	CTTGAG	1 cut(s)	318
BsaJI	CCNNGG	2 cut(s)	51, 129
Bsc4I	CCNNNNNNNGG	1 cut(s)	352
Bse1I	ACTGG	2 cut(s)	196, 289
BseBI	CCWGG	1 cut(s)	131
BseDI	CCNNGG	2 cut(s)	51, 129
BseGI	GGATG	1 cut(s)	227
BseLI	CCNNNNNNNGG	1 cut(s)	352
BseMII	CTCAG	1 cut(s)	86
BseNI	ACTGG	2 cut(s)	196, 289
BseRI	GAGGAG	2 cut(s)	89, 368
BseXI	GCAGC	2 cut(s)	124, 299
BshFI	GGCC	2 cut(s)	77, 134
BsiHKAI	GWGCWC	1 cut(s)	11
BsiHKCI	CYCGRG	1 cut(s)	216
BslFI	GGGAC	1 cut(s)	219
BslI	CCNNNNNNNGG	1 cut(s)	352
BsmFI	GGGAC	1 cut(s)	219
BsnI	GGCC	2 cut(s)	77, 134
BsoBI	CYCGRG	1 cut(s)	216
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	1 cut(s)	61
BspANI	GGCC	2 cut(s)	77, 134
BspCNI	CTCAG	1 cut(s)	85
BsrI	ACTGG	2 cut(s)	196, 289
BssECI	CCNNGG	2 cut(s)	51, 129
BssMI	GATC	1 cut(s)	61
BssT1I	CCWWGG	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	131
Bst4CI	ACNGT	3 cut(s)	84, 198, 283
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	2 cut(s)	72, 320
BstENI	CCTNNNNNAGG	1 cut(s)	350
BstF5I	GGATG	1 cut(s)	227
BstKTI	GATC	1 cut(s)	64
BstMBI	GATC	1 cut(s)	61
BstNI	CCWGG	1 cut(s)	131
BstSCI	CCNGG	1 cut(s)	129
BstV1I	GCAGC	2 cut(s)	124, 299
BsuRI	GGCC	2 cut(s)	77, 134
BtsCI	GGATG	1 cut(s)	227
Cac8I	GCNNGC	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	133
CviAII	CATG	4 cut(s)	109, 304, 341, 359
CviJI	RGCY	8 cut(s)	9, 50, 77, 134, 148, 312, 338, 384
CviKI_1	RGCY	8 cut(s)	9, 50, 77, 134, 148, 312, 338, 384
DdeI	CTNAG	2 cut(s)	72, 320
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
Ecl136II	GAGCTC	1 cut(s)	9
Eco130I	CCWWGG	1 cut(s)	51
Eco24I	GRGCYC	1 cut(s)	11
Eco32I	GATATC	1 cut(s)	69
Eco53kI	GAGCTC	1 cut(s)	9
Eco88I	CYCGRG	1 cut(s)	216
EcoICRI	GAGCTC	1 cut(s)	9
EcoNI	CCTNNNNNAGG	1 cut(s)	350
EcoRII	CCWGG	1 cut(s)	129
EcoRV	GATATC	1 cut(s)	69
EcoT14I	CCWWGG	1 cut(s)	51
EcoT38I	GRGCYC	1 cut(s)	11
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	4 cut(s)	112, 307, 344, 362
FaiI	YATR	7 cut(s)	80, 110, 243, 245, 305, 342, 360
FaqI	GGGAC	1 cut(s)	219
FatI	CATG	4 cut(s)	108, 303, 340, 358
FauNDI	CATATG	1 cut(s)	243
FbaI	TGATCA	1 cut(s)	61
Fnu4HI	GCNGC	2 cut(s)	113, 313
FokI	GGATG	1 cut(s)	214
FriOI	GRGCYC	1 cut(s)	11
Fsp4HI	GCNGC	2 cut(s)	113, 313
GluI	GCNGC	2 cut(s)	113, 313
HaeIII	GGCC	2 cut(s)	77, 134
Hin1II	CATG	4 cut(s)	112, 307, 344, 362
HindIII	AAGCTT	1 cut(s)	146
Hpy166II	GTNNAC	1 cut(s)	87
Hpy188I	TCNGA	2 cut(s)	61, 66
Hpy188III	TCNNGA	1 cut(s)	350
Hpy8I	GTNNAC	1 cut(s)	87
HpyAV	CCTTC	2 cut(s)	135, 356
HpyCH4III	ACNGT	3 cut(s)	84, 198, 283
HpyCH4V	TGCA	3 cut(s)	112, 239, 277
HpyF3I	CTNAG	2 cut(s)	72, 320
Hsp92II	CATG	4 cut(s)	112, 307, 344, 362
Ksp22I	TGATCA	1 cut(s)	61
Kzo9I	GATC	1 cut(s)	61
LmnI	GCTCC	1 cut(s)	355
LpnPI	CCDG	5 cut(s)	59, 116, 143, 177, 302
Lsp1109I	GCAGC	2 cut(s)	124, 299
LweI	GCATC	2 cut(s)	201, 226
MaeIII	GTNAC	2 cut(s)	255, 291
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	1 cut(s)	180
MmeI	TCCRAC	1 cut(s)	117
MseI	TTAA	1 cut(s)	183
MspR9I	CCNGG	1 cut(s)	131
MvaI	CCWGG	1 cut(s)	131
NdeI	CATATG	1 cut(s)	243
NdeII	GATC	1 cut(s)	61
NlaIII	CATG	4 cut(s)	112, 307, 344, 362
PaeR7I	CTCGAG	1 cut(s)	216
PkrI	GCNGC	2 cut(s)	114, 314
Psp124BI	GAGCTC	1 cut(s)	11
Psp6I	CCWGG	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	129
PspPI	GGNCC	1 cut(s)	133
PspXI	VCTCGAGB	1 cut(s)	216
SacI	GAGCTC	1 cut(s)	11
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	2 cut(s)	113, 313
Sau3AI	GATC	1 cut(s)	61
Sau96I	GGNCC	1 cut(s)	133
ScrFI	CCNGG	1 cut(s)	131
SduI	GDGCHC	1 cut(s)	11
SetI	ASST	9 cut(s)	11, 22, 99, 108, 150, 162, 314, 340, 366
SfaNI	GCATC	2 cut(s)	201, 226
Sfr274I	CTCGAG	1 cut(s)	216
SlaI	CTCGAG	1 cut(s)	216
SmlI	CTYRAG	2 cut(s)	216, 333
SmoI	CTYRAG	2 cut(s)	216, 333
Sse9I	AATT	1 cut(s)	180
SstI	GAGCTC	1 cut(s)	11
StyD4I	CCNGG	1 cut(s)	129
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	3 cut(s)	84, 198, 283
TaqI	TCGA	3 cut(s)	11, 217, 234
TasI	AATT	1 cut(s)	180
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TseI	GCWGC	2 cut(s)	112, 312
TspDTI	ATGAA	1 cut(s)	216
XagI	CCTNNNNNAGG	1 cut(s)	350
XhoI	CTCGAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.