Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0013281

Physical Location & Seq

Genomic Coordinates Reverse (-)

20793740 .. 20796234

Gene Structure 2495 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG236400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGTCTCCGATCAGATTTCTCAGGCCGTACTATCCACTTCCAACCTCCTCCACCTCATGCAGCAGTCCTCGCCTTCCCAGGCCCAACTGATAAAGCTTCCAAAGAACCTTTTGCTCAAATCATCTACAATCAAGAATACTGGACATTTATTGGAGCAGATGCCTCGAGTCATTTCATCTCTGGATGCACATATGGAAACTGGGTTGCAAAGTCTGCCTCATCTGCAAACTGTAATCCAACTACTTGCAAATATGGAAAGCTGCCAACTCAGTTCTCTCTCACAAGCTCATGTCCTTCAAGAGGAACATGAGGGAGAAAACCAACCTTCAAATGTGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0016032 GO:0019058 GO:0019079 GO:0044403 GO:0044419 GO:0046786 GO:0051704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BORCS7

Protein Analysis

113

Amino Acids

12.43

Weight (kDa)

5.58

Isoelectric Point (pI)

56.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013281)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32370 AT1G32370 AT1G32370 AT1G32370
fragaria_vesca	FvH4_5g21430 FvH4_5g21430
malus_domestica	MD06G1029000.v1.1
prunus_persica	Prupe.5G042800_v2.0.a1
pyrus_communis	pycom06g02310
rosa_chinensis	RchiOBHm_Chr7g0208861
rosa_laevigata	RLG00000003191
rosa_multiflora	Rmu_sc0023015.1_g000007
rosa_roxburghii	Rroxscaffold_3G00250190
rosa_rugosa	Rorug07G0106700
rosa_samantha	Rh7AG241800 Rh7BG236400 Rh7CG256400
rosa_wichuraiana	Rw7G020480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	30
AfiI	CCNNNNNNNGG	1 cut(s)	301
AgsI	TTSAA	2 cut(s)	299, 330
AjnI	CCWGG	1 cut(s)	78
AluBI	AGCT	3 cut(s)	97, 261, 287
AluI	AGCT	3 cut(s)	97, 261, 287
Alw26I	GTCTC	1 cut(s)	10
Ama87I	CYCGRG	1 cut(s)	165
AoxI	GGCC	2 cut(s)	24, 81
ApeKI	GCWGC	2 cut(s)	61, 261
AspS9I	GGNCC	1 cut(s)	82
AvaI	CYCGRG	1 cut(s)	165
BbvI	GCAGC	2 cut(s)	73, 248
BceAI	ACGGC	1 cut(s)	11
BcgI	CGANNNNNNTGC	2 cut(s)	146, 180
BciT130I	CCWGG	1 cut(s)	80
BcoDI	GTCTC	1 cut(s)	10
BisI	GCNGC	2 cut(s)	62, 262
BlsI	GCNGC	2 cut(s)	63, 263
Bme1390I	CCNGG	1 cut(s)	80
BmeT110I	CYCGRG	1 cut(s)	165
BmgT120I	GGNCC	1 cut(s)	82
BmrFI	CCNGG	1 cut(s)	80
BmrI	ACTGGG	1 cut(s)	210
BmsI	GCATC	2 cut(s)	150, 175
BmuI	ACTGGG	1 cut(s)	210
BsaI	GGTCTC	1 cut(s)	10
BsaJI	CCNNGG	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse1I	ACTGG	2 cut(s)	145, 205
BseBI	CCWGG	1 cut(s)	80
BseDI	CCNNGG	1 cut(s)	78
BseGI	GGATG	1 cut(s)	190
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseMII	CTCAG	2 cut(s)	35, 283
BseNI	ACTGG	2 cut(s)	145, 205
BseRI	GAGGAG	1 cut(s)	38
BseXI	GCAGC	2 cut(s)	73, 248
BshFI	GGCC	2 cut(s)	26, 83
BsiHKCI	CYCGRG	1 cut(s)	165
BslI	CCNNNNNNNGG	1 cut(s)	301
BsmAI	GTCTC	1 cut(s)	10
BsnI	GGCC	2 cut(s)	26, 83
Bso31I	GGTCTC	1 cut(s)	10
BsoBI	CYCGRG	1 cut(s)	165
Bsp143I	GATC	1 cut(s)	10
BspANI	GGCC	2 cut(s)	26, 83
BspCNI	CTCAG	2 cut(s)	34, 282
BspTNI	GGTCTC	1 cut(s)	10
BsrI	ACTGG	2 cut(s)	145, 205
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	1 cut(s)	10
Bst2UI	CCWGG	1 cut(s)	80
Bst4CI	ACNGT	1 cut(s)	232
BstAPI	GCANNNNNTGC	1 cut(s)	214
BstDEI	CTNAG	2 cut(s)	21, 269
BstENI	CCTNNNNNAGG	1 cut(s)	299
BstF5I	GGATG	1 cut(s)	190
BstKTI	GATC	1 cut(s)	13
BstMAI	GTCTC	1 cut(s)	10
BstMBI	GATC	1 cut(s)	10
BstMWI	GCNNNNNNNGC	3 cut(s)	70, 214, 223
BstNI	CCWGG	1 cut(s)	80
BstSCI	CCNGG	1 cut(s)	78
BstV1I	GCAGC	2 cut(s)	73, 248
BsuRI	GGCC	2 cut(s)	26, 83
BtsCI	GGATG	1 cut(s)	190
Cfr13I	GGNCC	1 cut(s)	82
Csp6I	GTAC	1 cut(s)	29
CviAII	CATG	3 cut(s)	58, 290, 308
CviJI	RGCY	5 cut(s)	26, 83, 97, 261, 287
CviKI_1	RGCY	5 cut(s)	26, 83, 97, 261, 287
CviQI	GTAC	1 cut(s)	29
DdeI	CTNAG	2 cut(s)	21, 269
DpnI	GATC	1 cut(s)	12
DpnII	GATC	1 cut(s)	10
Eco31I	GGTCTC	1 cut(s)	10
Eco88I	CYCGRG	1 cut(s)	165
EcoNI	CCTNNNNNAGG	1 cut(s)	299
EcoRII	CCWGG	1 cut(s)	78
FaeI	CATG	3 cut(s)	61, 293, 311
FaiI	YATR	6 cut(s)	59, 192, 194, 254, 291, 309
FatI	CATG	3 cut(s)	57, 289, 307
FauNDI	CATATG	1 cut(s)	192
Fnu4HI	GCNGC	2 cut(s)	62, 262
FokI	GGATG	1 cut(s)	197
Fsp4HI	GCNGC	2 cut(s)	62, 262
GluI	GCNGC	2 cut(s)	62, 262
HaeIII	GGCC	2 cut(s)	26, 83
Hin1II	CATG	3 cut(s)	61, 293, 311
HindIII	AAGCTT	1 cut(s)	95
HinfI	GANTC	1 cut(s)	168
Hpy188I	TCNGA	2 cut(s)	10, 15
Hpy188III	TCNNGA	3 cut(s)	133, 182, 299
HpyAV	CCTTC	3 cut(s)	84, 305, 336
HpyCH4III	ACNGT	1 cut(s)	232
HpyCH4V	TGCA	5 cut(s)	61, 188, 208, 226, 248
HpyF10VI	GCNNNNNNNGC	3 cut(s)	70, 214, 223
HpyF3I	CTNAG	2 cut(s)	21, 269
Hsp92II	CATG	3 cut(s)	61, 293, 311
Kzo9I	GATC	1 cut(s)	10
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	6 cut(s)	8, 65, 92, 126, 167, 186
Lsp1109I	GCAGC	2 cut(s)	73, 248
LweI	GCATC	2 cut(s)	150, 175
MalI	GATC	1 cut(s)	12
MboI	GATC	1 cut(s)	10
MlyI	GAGTC	1 cut(s)	177
MmeI	TCCRAC	2 cut(s)	66, 262
MnlI	CCTC	8 cut(s)	56, 59, 65, 79, 174, 228, 295, 304
MspR9I	CCNGG	1 cut(s)	80
MvaI	CCWGG	1 cut(s)	80
MwoI	GCNNNNNNNGC	3 cut(s)	70, 214, 223
NdeI	CATATG	1 cut(s)	192
NdeII	GATC	1 cut(s)	10
NlaIII	CATG	3 cut(s)	61, 293, 311
PaeR7I	CTCGAG	1 cut(s)	165
PkrI	GCNGC	2 cut(s)	63, 263
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
Psp6I	CCWGG	1 cut(s)	78
PspGI	CCWGG	1 cut(s)	78
PspPI	GGNCC	1 cut(s)	82
PspXI	VCTCGAGB	1 cut(s)	165
RsaI	GTAC	1 cut(s)	30
RsaNI	GTAC	1 cut(s)	29
SatI	GCNGC	2 cut(s)	62, 262
Sau3AI	GATC	1 cut(s)	10
Sau96I	GGNCC	1 cut(s)	82
SchI	GAGTC	1 cut(s)	177
ScrFI	CCNGG	1 cut(s)	80
SetI	ASST	7 cut(s)	48, 57, 99, 111, 263, 289, 328
SfaNI	GCATC	2 cut(s)	150, 175
Sfr274I	CTCGAG	1 cut(s)	165
SlaI	CTCGAG	1 cut(s)	165
SmlI	CTYRAG	1 cut(s)	165
SmoI	CTYRAG	1 cut(s)	165
StyD4I	CCNGG	1 cut(s)	78
TaaI	ACNGT	1 cut(s)	232
TaqI	TCGA	1 cut(s)	166
TseI	GCWGC	2 cut(s)	61, 261
TspDTI	ATGAA	1 cut(s)	165
XagI	CCTNNNNNAGG	1 cut(s)	299
XhoI	CTCGAG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.