Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015975

Physical Location & Seq

Genomic Coordinates Forward (+)

11738118 .. 11739326

Gene Structure 1209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G32460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGAACAACCGAGGAACAACAAGACCTCTCAAGAACAAGCTCGTGAATCGCTCATCGAAATCTCCTACACTTCACCCGAGGAAGACGAGGTTATAACCTACTCAGATGTGAAGCCTGTCACCTATATCTCAAACGGAAGTGCCAAAGGAAACAAAGATGATGCGGAGAAGCTCAGAGATGAGCTGATTTCGATATCCTACGACGAGTCACCGTCGCCTTCACCGGATGTGGATGTAGCTGTTTCGCCGACCCTGCCGAACGGTGTATGTCGTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

92

Amino Acids

10.09

Weight (kDa)

4.29

Isoelectric Point (pI)

69.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF6865	PF21737	6 - 72	3.7e-20	Family of unknown function (DUF6865)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32460
fragaria_vesca	FvH4_7g07910
malus_domestica	MD02G1229100.v1.1 MD07G1083000.v1.1
prunus_persica	Prupe.2G109900_v2.0.a1 Prupe.2G110100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0341401
rosa_laevigata	RLG00000029088
rosa_multiflora	Rmu_sc0000047.1_g000007
rosa_roxburghii	Rroxscaffold_4G00312040
rosa_samantha	Rh1AG171700 Rh1AG171800 Rh1BG139500 Rh1CG159600 Rh1DG171900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	95
AciI	CCGC	1 cut(s)	164
AluBI	AGCT	4 cut(s)	41, 172, 184, 239
AluI	AGCT	4 cut(s)	41, 172, 184, 239
Ama87I	CYCGRG	1 cut(s)	77
AsuHPI	GGTGA	4 cut(s)	66, 112, 201, 213
AvaI	CYCGRG	1 cut(s)	77
BauI	CACGAG	1 cut(s)	42
BbsI	GAAGAC	1 cut(s)	90
BmeT110I	CYCGRG	1 cut(s)	77
BmsI	GCATC	1 cut(s)	151
BpiI	GAAGAC	1 cut(s)	90
BpuEI	CTTGAG	1 cut(s)	15
BsaJI	CCNNGG	2 cut(s)	11, 78
BsaWI	WCCGGW	1 cut(s)	223
BseDI	CCNNGG	2 cut(s)	11, 78
BseGI	GGATG	2 cut(s)	232, 238
BseMII	CTCAG	2 cut(s)	117, 187
BsiHKCI	CYCGRG	1 cut(s)	77
BsiSI	CCGG	1 cut(s)	224
BsoBI	CYCGRG	1 cut(s)	77
BspACI	CCGC	1 cut(s)	164
BspCNI	CTCAG	2 cut(s)	116, 186
BssECI	CCNNGG	2 cut(s)	11, 78
BssSI	CACGAG	1 cut(s)	42
Bst2BI	CACGAG	1 cut(s)	42
Bst4CI	ACNGT	2 cut(s)	213, 263
BstDEI	CTNAG	2 cut(s)	103, 173
BstF5I	GGATG	2 cut(s)	232, 238
BstMWI	GCNNNNNNNGC	1 cut(s)	253
BstV2I	GAAGAC	1 cut(s)	90
BtsCI	GGATG	2 cut(s)	232, 238
CviJI	RGCY	5 cut(s)	41, 115, 172, 184, 239
CviKI_1	RGCY	5 cut(s)	41, 115, 172, 184, 239
DdeI	CTNAG	2 cut(s)	103, 173
Eco32I	GATATC	1 cut(s)	195
Eco88I	CYCGRG	1 cut(s)	77
EcoRV	GATATC	1 cut(s)	195
FaiI	YATR	3 cut(s)	95, 126, 268
FokI	GGATG	2 cut(s)	239, 245
HapII	CCGG	1 cut(s)	224
HinfI	GANTC	2 cut(s)	47, 206
HpaII	CCGG	1 cut(s)	224
HphI	GGTGA	4 cut(s)	66, 112, 201, 213
Hpy188I	TCNGA	2 cut(s)	106, 176
Hpy188III	TCNNGA	2 cut(s)	32, 44
Hpy99I	CGWCG	2 cut(s)	206, 217
HpyAV	CCTTC	1 cut(s)	228
HpyCH4III	ACNGT	2 cut(s)	213, 263
HpyF10VI	GCNNNNNNNGC	1 cut(s)	253
HpyF3I	CTNAG	2 cut(s)	103, 173
LpnPI	CCDG	3 cut(s)	129, 237, 266
LweI	GCATC	1 cut(s)	151
MaeIII	GTNAC	2 cut(s)	118, 207
MboII	GAAGA	1 cut(s)	95
MlyI	GAGTC	1 cut(s)	215
MnlI	CCTC	4 cut(s)	6, 37, 73, 82
MspI	CCGG	1 cut(s)	224
MwoI	GCNNNNNNNGC	1 cut(s)	253
NmuCI	GTSAC	2 cut(s)	118, 207
PfeI	GAWTC	1 cut(s)	47
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
PsiI	TTATAA	1 cut(s)	95
SchI	GAGTC	1 cut(s)	215
SetI	ASST	8 cut(s)	29, 43, 93, 101, 125, 174, 186, 241
SfaNI	GCATC	1 cut(s)	151
SmlI	CTYRAG	1 cut(s)	30
SmoI	CTYRAG	1 cut(s)	30
SsiI	CCGC	1 cut(s)	164
TaaI	ACNGT	2 cut(s)	213, 263
TaqI	TCGA	2 cut(s)	57, 191
TfiI	GAWTC	1 cut(s)	47
TseFI	GTSAC	2 cut(s)	118, 207
Tsp45I	GTSAC	2 cut(s)	118, 207
TspGWI	ACGGA	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.