MD07G1083000.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0015975
Physical Location & Seq
Forward (+)
8149875 .. 8152309
2435 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1083000.v1.1.491

Sequence Viewer

Length: 243 bp
ATGGATAAAGCAGGACTTGGCAAGGAGGCTCCTGAAGAAGTGACTCGTGAGTCGCTTATTGCCATTTCGTACTCTTTACCAGAGAAGAATCTCACTTCAAAACTCTCTTCTGGAGAGTTGAATGGCGAGGCAATAGATACTGATGGAGAAGAGAAGTTTAGGTCTGAGCTGATCTCCATTTCGTATACAGAGTCACCGGAAGTTGGAGGCTTACCCGTTACCATGGGAGAACTTAACGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

8.52

Weight (kDa)

4.28

Isoelectric Point (pI)

41.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6865 PF21737 6 - 68 9e-28 Family of unknown function (DUF6865)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015975)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32460
fragaria_vesca FvH4_7g07910
malus_domestica MD02G1229100.v1.1 MD07G1083000.v1.1
prunus_persica Prupe.2G109900_v2.0.a1 Prupe.2G110100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0341401
rosa_laevigata RLG00000029088
rosa_multiflora Rmu_sc0000047.1_g000007
rosa_roxburghii Rroxscaffold_4G00312040
rosa_samantha Rh1AG171700 Rh1AG171800 Rh1BG139500 Rh1CG159600 Rh1DG171900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 49
AccI GTMKAC 1 cut(s) 185
AcuI CTGAAG 1 cut(s) 54
AfaI GTAC 1 cut(s) 71
AfiI CCNNNNNNNGG 1 cut(s) 203
AgsI TTSAA 2 cut(s) 99, 121
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
AsuHPI GGTGA 1 cut(s) 186
BauI CACGAG 1 cut(s) 45
BccI CCATC 1 cut(s) 137
BfaI CTAG 1 cut(s) 241
BmiI GGNNCC 1 cut(s) 30
BplI GAGNNNNNCTC 2 cut(s) 158, 190
BpmI CTGGAG 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 222
BsaWI WCCGGW 1 cut(s) 196
Bsc4I CCNNNNNNNGG 1 cut(s) 203
BseDI CCNNGG 1 cut(s) 222
BseLI CCNNNNNNNGG 1 cut(s) 203
BseMII CTCAG 1 cut(s) 156
BsiSI CCGG 1 cut(s) 197
BslI CCNNNNNNNGG 1 cut(s) 203
Bsp143I GATC 1 cut(s) 171
Bsp19I CCATGG 1 cut(s) 222
BspCNI CTCAG 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 30
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 1 cut(s) 171
BssNAI GTATAC 1 cut(s) 186
BssSI CACGAG 1 cut(s) 45
BssT1I CCWWGG 1 cut(s) 222
Bst1107I GTATAC 1 cut(s) 186
Bst2BI CACGAG 1 cut(s) 45
Bst6I CTCTTC 2 cut(s) 112, 144
BstDEI CTNAG 1 cut(s) 165
BstDSI CCRYGG 1 cut(s) 222
BstKTI GATC 1 cut(s) 174
BstMBI GATC 1 cut(s) 171
BstZ17I GTATAC 1 cut(s) 186
BtgI CCRYGG 1 cut(s) 222
Csp6I GTAC 1 cut(s) 70
CviAII CATG 1 cut(s) 223
CviJI RGCY 4 cut(s) 29, 169, 210, 240
CviKI_1 RGCY 4 cut(s) 29, 169, 210, 240
CviQI GTAC 1 cut(s) 70
DdeI CTNAG 1 cut(s) 165
DpnI GATC 1 cut(s) 173
DpnII GATC 1 cut(s) 171
DrdI GACNNNNNNGTC 1 cut(s) 49
DseDI GACNNNNNNGTC 1 cut(s) 49
Eam1104I CTCTTC 2 cut(s) 112, 144
EarI CTCTTC 2 cut(s) 112, 144
Eco130I CCWWGG 1 cut(s) 222
Eco57I CTGAAG 1 cut(s) 54
EcoT14I CCWWGG 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 1 cut(s) 226
FaiI YATR 2 cut(s) 186, 224
FalI AAGNNNNNCTT 1 cut(s) 32
FatI CATG 1 cut(s) 222
FblI GTMKAC 1 cut(s) 185
FspBI CTAG 1 cut(s) 241
GsuI CTGGAG 1 cut(s) 132
HapII CCGG 1 cut(s) 197
Hin1II CATG 1 cut(s) 226
HinfI GANTC 4 cut(s) 43, 50, 88, 191
HpaII CCGG 1 cut(s) 197
HphI GGTGA 1 cut(s) 186
Hpy166II GTNNAC 1 cut(s) 186
Hpy188I TCNGA 1 cut(s) 166
Hpy188III TCNNGA 3 cut(s) 32, 47, 111
Hpy8I GTNNAC 1 cut(s) 186
HpyF3I CTNAG 1 cut(s) 165
Hsp92II CATG 1 cut(s) 226
Kzo9I GATC 1 cut(s) 171
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 4 cut(s) 45, 93, 96, 210
MaeI CTAG 1 cut(s) 241
MaeIII GTNAC 3 cut(s) 40, 192, 217
MalI GATC 1 cut(s) 173
MboI GATC 1 cut(s) 171
MboII GAAGA 4 cut(s) 47, 97, 99, 161
MlyI GAGTC 3 cut(s) 37, 59, 200
MmeI TCCRAC 1 cut(s) 184
MnlI CCTC 3 cut(s) 19, 121, 200
MseI TTAA 1 cut(s) 234
MspI CCGG 1 cut(s) 197
NcoI CCATGG 1 cut(s) 222
NdeII GATC 1 cut(s) 171
NlaIII CATG 1 cut(s) 226
NlaIV GGNNCC 1 cut(s) 30
NmuCI GTSAC 2 cut(s) 40, 192
PfeI GAWTC 1 cut(s) 88
PleI GAGTC 3 cut(s) 37, 58, 199
PpsI GAGTC 3 cut(s) 37, 58, 199
PspN4I GGNNCC 1 cut(s) 30
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
SaqAI TTAA 1 cut(s) 234
Sau3AI GATC 1 cut(s) 171
SchI GAGTC 3 cut(s) 37, 59, 200
SetI ASST 2 cut(s) 164, 171
SspMI CTAG 1 cut(s) 241
StyI CCWWGG 1 cut(s) 222
TfiI GAWTC 1 cut(s) 88
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TseFI GTSAC 2 cut(s) 40, 192
Tsp45I GTSAC 2 cut(s) 40, 192
XmiI GTMKAC 1 cut(s) 185
XspI CTAG 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.