Rmu_sc0000047.1_g000007

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000047.1
OG0015975
Physical Location & Seq
Forward (+)
67690 .. 69454
1765 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000047.1_g000007.1.cds

Sequence Viewer

Length: 417 bp
atggataaaggagtaaccggaaaggaggccctgaaggaagtgacccgtgagtcgcttattgccatttcttactctgaaccagagaagaaactcacttctgataagttgaatggtgaaactctggttaaaccaatagattctgatggagaagacaagttcagttatgtgattcagtacaagagcaacattgagcatctcaccagacaggttcaggaactgcatgataaaagatatggagtggacatggaggtgaaacctgctacagaagcttcgaagattattgatcctggagttaaacattggctggctgagggagacaagctgataggagaaaaggagaagtgtttcaatgaagagactgtagcaacaaaggcagcatgctgtaatgggtcttttccagatgccgttattctttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

138

Amino Acids

15.36

Weight (kDa)

5.15

Isoelectric Point (pI)

22.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015975)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32460
fragaria_vesca FvH4_7g07910
malus_domestica MD02G1229100.v1.1 MD07G1083000.v1.1
prunus_persica Prupe.2G109900_v2.0.a1 Prupe.2G110100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0341401
rosa_laevigata RLG00000029088
rosa_multiflora Rmu_sc0000047.1_g000007
rosa_roxburghii Rroxscaffold_4G00312040
rosa_samantha Rh1AG171700 Rh1AG171800 Rh1BG139500 Rh1CG159600 Rh1DG171900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 49
Acc36I ACCTGC 1 cut(s) 265
AclWI GGATC 1 cut(s) 278
AcuI CTGAAG 1 cut(s) 53
AfaI GTAC 1 cut(s) 176
AgsI TTSAA 2 cut(s) 109, 349
AjnI CCWGG 1 cut(s) 286
AluBI AGCT 2 cut(s) 269, 322
AluI AGCT 2 cut(s) 269, 322
Alw26I GTCTC 2 cut(s) 309, 350
AlwI GGATC 1 cut(s) 278
AlwNI CAGNNNCTG 1 cut(s) 217
AoxI GGCC 1 cut(s) 27
ApeKI GCWGC 1 cut(s) 374
Asp700I GAANNNNTTC 1 cut(s) 344
AspS9I GGNCC 1 cut(s) 28
AsuHPI GGTGA 3 cut(s) 125, 190, 262
AsuII TTCGAA 1 cut(s) 272
BbsI GAAGAC 1 cut(s) 156
BbvCI CCTCAGC 1 cut(s) 309
BbvI GCAGC 1 cut(s) 386
BccI CCATC 1 cut(s) 137
BceAI ACGGC 1 cut(s) 389
BciT130I CCWGG 1 cut(s) 288
BcoDI GTCTC 2 cut(s) 309, 350
BfmI CTRYAG 2 cut(s) 261, 360
BfuAI ACCTGC 1 cut(s) 265
BisI GCNGC 1 cut(s) 375
BlsI GCNGC 1 cut(s) 376
Bme1390I CCNGG 1 cut(s) 288
BmgT120I GGNCC 1 cut(s) 28
BmrFI CCNGG 1 cut(s) 288
BmsI GCATC 2 cut(s) 202, 391
BpiI GAAGAC 1 cut(s) 156
BpmI CTGGAG 1 cut(s) 309
Bpu10I CCTNAGC 1 cut(s) 309
Bpu14I TTCGAA 1 cut(s) 272
BsaWI WCCGGW 1 cut(s) 17
BseBI CCWGG 1 cut(s) 288
BseMII CTCAG 1 cut(s) 300
BseXI GCAGC 1 cut(s) 386
BshFI GGCC 1 cut(s) 29
BsiSI CCGG 1 cut(s) 18
BsmAI GTCTC 2 cut(s) 309, 350
BsnI GGCC 1 cut(s) 29
Bsp119I TTCGAA 1 cut(s) 272
Bsp143I GATC 1 cut(s) 283
BspANI GGCC 1 cut(s) 29
BspCNI CTCAG 1 cut(s) 301
BspMI ACCTGC 1 cut(s) 265
BspPI GGATC 1 cut(s) 278
BspT104I TTCGAA 1 cut(s) 272
BssMI GATC 1 cut(s) 283
Bst2UI CCWGG 1 cut(s) 288
Bst4CI ACNGT 1 cut(s) 361
Bst6I CTCTTC 1 cut(s) 348
BstBI TTCGAA 1 cut(s) 272
BstC8I GCNNGC 2 cut(s) 306, 379
BstDEI CTNAG 1 cut(s) 309
BstKTI GATC 1 cut(s) 286
BstMAI GTCTC 2 cut(s) 309, 350
BstMBI GATC 1 cut(s) 283
BstMWI GCNNNNNNNGC 2 cut(s) 266, 371
BstNI CCWGG 1 cut(s) 288
BstNSI RCATGY 1 cut(s) 381
BstSCI CCNGG 1 cut(s) 286
BstSFI CTRYAG 2 cut(s) 261, 360
BstV1I GCAGC 1 cut(s) 386
BstV2I GAAGAC 1 cut(s) 156
BsuRI GGCC 1 cut(s) 29
BveI ACCTGC 1 cut(s) 265
Cac8I GCNNGC 2 cut(s) 306, 379
CaiI CAGNNNCTG 1 cut(s) 217
Cfr13I GGNCC 1 cut(s) 28
Csp6I GTAC 1 cut(s) 175
CviAII CATG 3 cut(s) 221, 244, 378
CviJI RGCY 5 cut(s) 29, 269, 304, 308, 322
CviKI_1 RGCY 5 cut(s) 29, 269, 304, 308, 322
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 1 cut(s) 309
DpnI GATC 1 cut(s) 285
DpnII GATC 1 cut(s) 283
DrdI GACNNNNNNGTC 1 cut(s) 49
DseDI GACNNNNNNGTC 1 cut(s) 49
Eam1104I CTCTTC 1 cut(s) 348
EarI CTCTTC 1 cut(s) 348
Eco57I CTGAAG 1 cut(s) 53
EcoO109I RGGNCCY 1 cut(s) 28
EcoRII CCWGG 1 cut(s) 286
FaeI CATG 3 cut(s) 224, 247, 381
FaiI YATR 5 cut(s) 165, 222, 234, 245, 379
FatI CATG 3 cut(s) 220, 243, 377
Fnu4HI GCNGC 1 cut(s) 375
Fsp4HI GCNGC 1 cut(s) 375
GluI GCNGC 1 cut(s) 375
GsuI CTGGAG 1 cut(s) 309
HaeIII GGCC 1 cut(s) 29
HapII CCGG 1 cut(s) 18
Hin1II CATG 3 cut(s) 224, 247, 381
HindIII AAGCTT 1 cut(s) 267
HinfI GANTC 3 cut(s) 50, 137, 169
HpaII CCGG 1 cut(s) 18
HphI GGTGA 3 cut(s) 125, 190, 262
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 3 cut(s) 76, 100, 142
Hpy188III TCNNGA 2 cut(s) 212, 398
Hpy8I GTNNAC 1 cut(s) 241
HpyAV CCTTC 1 cut(s) 28
HpyCH4III ACNGT 1 cut(s) 361
HpyCH4V TGCA 1 cut(s) 220
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 371
HpyF3I CTNAG 1 cut(s) 309
Hsp92II CATG 3 cut(s) 224, 247, 381
Kzo9I GATC 1 cut(s) 283
Lsp1109I GCAGC 1 cut(s) 386
LweI GCATC 2 cut(s) 202, 391
MaeIII GTNAC 2 cut(s) 13, 40
MalI GATC 1 cut(s) 285
MboI GATC 1 cut(s) 283
MboII GAAGA 4 cut(s) 97, 161, 286, 365
MlyI GAGTC 1 cut(s) 59
MnlI CCTC 3 cut(s) 19, 241, 304
MroXI GAANNNNTTC 1 cut(s) 344
MseI TTAA 2 cut(s) 126, 294
MslI CAYNNNNRTG 1 cut(s) 248
MspI CCGG 1 cut(s) 18
MspR9I CCNGG 1 cut(s) 288
MvaI CCWGG 1 cut(s) 288
MwoI GCNNNNNNNGC 2 cut(s) 266, 371
NdeII GATC 1 cut(s) 283
NlaIII CATG 3 cut(s) 224, 247, 381
NmuCI GTSAC 1 cut(s) 40
NspI RCATGY 1 cut(s) 381
NspV TTCGAA 1 cut(s) 272
PaeI GCATGC 1 cut(s) 381
PdmI GAANNNNTTC 1 cut(s) 344
PfeI GAWTC 2 cut(s) 137, 169
PfoI TCCNGGA 1 cut(s) 286
PkrI GCNGC 1 cut(s) 376
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
Psp6I CCWGG 1 cut(s) 286
PspGI CCWGG 1 cut(s) 286
PspPI GGNCC 1 cut(s) 28
PstNI CAGNNNCTG 1 cut(s) 217
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
RseI CAYNNNNRTG 1 cut(s) 248
SaqAI TTAA 2 cut(s) 126, 294
SatI GCNGC 1 cut(s) 375
Sau3AI GATC 1 cut(s) 283
Sau96I GGNCC 1 cut(s) 28
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 1 cut(s) 288
SetI ASST 5 cut(s) 210, 252, 259, 271, 324
SfaNI GCATC 2 cut(s) 202, 391
SfcI CTRYAG 2 cut(s) 261, 360
SfuI TTCGAA 1 cut(s) 272
SmiMI CAYNNNNRTG 1 cut(s) 248
SphI GCATGC 1 cut(s) 381
StyD4I CCNGG 1 cut(s) 286
TaaI ACNGT 1 cut(s) 361
TaqI TCGA 1 cut(s) 272
TatI WGTACW 1 cut(s) 174
TfiI GAWTC 2 cut(s) 137, 169
Tru1I TTAA 2 cut(s) 126, 294
Tru9I TTAA 2 cut(s) 126, 294
TseFI GTSAC 1 cut(s) 40
TseI GCWGC 1 cut(s) 374
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 1 cut(s) 366
XceI RCATGY 1 cut(s) 381
XmnI GAANNNNTTC 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.